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The map label for this gene is rpe [H]

Identifier: 147674230

GI number: 147674230

Start: 2349988

End: 2350698

Strand: Reverse

Name: rpe [H]

Synonym: VC0395_A2202

Alternate gene names: 147674230

Gene position: 2350698-2349988 (Counterclockwise)

Preceding gene: 147675035

Following gene: 147673858

Centisome position: 77.73

GC content: 51.05

Gene sequence:

>711_bases
GTGTTCAGCTTGCATTCAATTCCTAACGAGGTCGGTATGAAAGATTTTCTCATTGCACCATCCATTCTCTCCGCTGATTT
TGCCCGTCTGGGCGAAGATGTTGCCAAAGTGCTCGCCGCAGGAGCGGATGTGGTGCATTTCGATGTGATGGACAATCACT
ACGTACCGAACCTGACGTTTGGCGCACCGATTTGTAAAGCCCTGCGCGATTACGGCATTACGGCACCGATTGATGTGCAT
TTGATGGTGAAACCGGTGGATCGCATCATTCCGGACTTTGCCAAAGCAGGCGCCTCCATGATCACTTTCCACGTTGAAGC
CTCAGAGCACGTTGACCGCACTTTGCAGCTCATCAAAGAGTGCGGCTGTCAGGCGGGCGTGGTACTGAACCCAGCGACAC
CTCTGCACCATCTCGATTACATCATGGATAAAGTCGATTTGATTTTGCTGATGTCGGTGAACCCAGGCTTTGGCGGACAA
TCTTTTATTCCGCATACCTTAGATAAACTGCGCGCGGTGCGTGAACGTATCAAGCAAAGCGGGCGTCAAATTCGTTTGGA
AATTGATGGTGGCGTGAAAGTGGAGAATATCCGGGAAATCGCGGAAGCGGGTGCCGATATGTTTGTGGCAGGCTCGGCGA
TTTTTGGTCAGCCTGATTACCAAGCGGTGATTGAGCAGATGCGTGCTGAACTGGCGAAAGCCAAAATTTAA

Upstream 100 bases:

>100_bases
GCAAGCGTGATCTTGTGGGCTGAATGGTGGATTTCCTCTCCCTGCCTCAAGTCACGCGCTAGGATCTCGTCACCAGCTTA
GGTAGAATGGCGGCCACATT

Downstream 100 bases:

>100_bases
TCTGATTTAGGATCGTGTTTTGAAATCCATAAAATTAATTGCTTTTGATTTGGATGGTACGCTGCTCGACAGTGTGCCGG
ATTTAGCGGTAGCGGCGGAT

Product: ribulose-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MFSLHSIPNEVGMKDFLIAPSILSADFARLGEDVAKVLAAGADVVHFDVMDNHYVPNLTFGAPICKALRDYGITAPIDVH
LMVKPVDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKECGCQAGVVLNPATPLHHLDYIMDKVDLILLMSVNPGFGGQ
SFIPHTLDKLRAVRERIKQSGRQIRLEIDGGVKVENIREIAEAGADMFVAGSAIFGQPDYQAVIEQMRAELAKAKI

Sequences:

>Translated_236_residues
MFSLHSIPNEVGMKDFLIAPSILSADFARLGEDVAKVLAAGADVVHFDVMDNHYVPNLTFGAPICKALRDYGITAPIDVH
LMVKPVDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKECGCQAGVVLNPATPLHHLDYIMDKVDLILLMSVNPGFGGQ
SFIPHTLDKLRAVRERIKQSGRQIRLEIDGGVKVENIREIAEAGADMFVAGSAIFGQPDYQAVIEQMRAELAKAKI
>Mature_236_residues
MFSLHSIPNEVGMKDFLIAPSILSADFARLGEDVAKVLAAGADVVHFDVMDNHYVPNLTFGAPICKALRDYGITAPIDVH
LMVKPVDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKECGCQAGVVLNPATPLHHLDYIMDKVDLILLMSVNPGFGGQ
SFIPHTLDKLRAVRERIKQSGRQIRLEIDGGVKVENIREIAEAGADMFVAGSAIFGQPDYQAVIEQMRAELAKAKI

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=218, Percent_Identity=38.5321100917431, Blast_Score=164, Evalue=5e-41,
Organism=Homo sapiens, GI219879828, Length=218, Percent_Identity=37.6146788990826, Blast_Score=154, Evalue=4e-38,
Organism=Homo sapiens, GI24307923, Length=174, Percent_Identity=32.183908045977, Blast_Score=97, Evalue=2e-20,
Organism=Escherichia coli, GI1789788, Length=221, Percent_Identity=81.447963800905, Blast_Score=372, Evalue=1e-104,
Organism=Escherichia coli, GI1790523, Length=197, Percent_Identity=35.0253807106599, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1790754, Length=211, Percent_Identity=28.9099526066351, Blast_Score=97, Evalue=7e-22,
Organism=Caenorhabditis elegans, GI17552948, Length=216, Percent_Identity=39.8148148148148, Blast_Score=163, Evalue=9e-41,
Organism=Saccharomyces cerevisiae, GI6322341, Length=229, Percent_Identity=38.8646288209607, Blast_Score=164, Evalue=1e-41,
Organism=Drosophila melanogaster, GI24586301, Length=211, Percent_Identity=40.7582938388626, Blast_Score=169, Evalue=1e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 25783; Mature: 25783

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1 ; PS01086 RIBUL_P_3_EPIMER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSLHSIPNEVGMKDFLIAPSILSADFARLGEDVAKVLAAGADVVHFDVMDNHYVPNLTF
CCCCCCCCHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCC
GAPICKALRDYGITAPIDVHLMVKPVDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKE
CHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHH
CGCQAGVVLNPATPLHHLDYIMDKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRERIKQS
CCCCCCEEECCCCHHHHHHHHHHHHHEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHC
GRQIRLEIDGGVKVENIREIAEAGADMFVAGSAIFGQPDYQAVIEQMRAELAKAKI
CCEEEEEECCCEEHHHHHHHHHCCCCEEEECCHHCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFSLHSIPNEVGMKDFLIAPSILSADFARLGEDVAKVLAAGADVVHFDVMDNHYVPNLTF
CCCCCCCCHHHCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCC
GAPICKALRDYGITAPIDVHLMVKPVDRIIPDFAKAGASMITFHVEASEHVDRTLQLIKE
CHHHHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHH
CGCQAGVVLNPATPLHHLDYIMDKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRERIKQS
CCCCCCEEECCCCHHHHHHHHHHHHHEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHC
GRQIRLEIDGGVKVENIREIAEAGADMFVAGSAIFGQPDYQAVIEQMRAELAKAKI
CCEEEEEECCCEEHHHHHHHHHCCCCEEEECCHHCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]