Click here to switch to the map view.

The map label for this gene is yadH [H]

Identifier: 147674111

GI number: 147674111

Start: 108634

End: 109404

Strand: Direct

Name: yadH [H]

Synonym: VC0395_A0121

Alternate gene names: 147674111

Gene position: 108634-109404 (Clockwise)

Preceding gene: 147675033

Following gene: 147675683

Centisome position: 3.59

GC content: 46.69

Gene sequence:

>771_bases
ATGTATCAAATTTATTGGACGGCATTTTGTAGTCTGCTCGGCAAAGAAATTAACCGGTTTACCCGTATTTGGGTGCAAAC
TTTGGTTCCACCCGCCATCACTATGACGCTGTACTTCATCATCTTCGGTAATTTGATTGGCTCTCGAATCGGCCAGATGA
ACGGTTTCAGCTACATGGAGTACATCGTACCCGGTCTCATTATGATGTCGGTGATCACCAACTCTTATTCCAATGTGGCA
TCCTCTTTCTTTAGCTCTAAGTTTCAAAAGAACATTGAAGAGCTGTTAGTCGCTCCTGTGCCAAACTATGTGATTATCGC
AGGTTACGTGATGGGCGGCGTCGCGCGTGGATTGTTGGTGGGGGCTATGGTGACAGCGGTTTCACTATTGTTTGTCGATT
TGCAGGTCGATCATTGGGGCATCATTATTGCGACGGTATTTTTAACCTCGGTGGTGTTTTCACTCGGTGGATTGATTAAC
GCGGTGTTTGCCAAAACGTTTGATGATATCTCAATTGTTCCGACCTTCGTGCTGACGCCGCTGACTTACCTTGGTGGGGT
ATTTTATTCGATTAGCTTGCTGCCGGAGTTTTGGCAAAGTGTCTCGAAGATCAATCCGATTGTCTACATGGTCAATGCGT
TCCGCTACGGTTTCCTTGGCGTGTCGGATGTGGATATCATGACTTCGTTTGCAGTGTTAATGGCATTTGTGGTGGCGCTG
TACTGTGTGGCGCATTATTTAGTGACCAAAGGCAAAGGGCTGCGCAGCTAA

Upstream 100 bases:

>100_bases
CCGAACAAGGGGTGAAAGTGCTGTCGATGCGCAACAAAGTGAACCGTTTGGAAGAGCTGTTTGTCAGCATAGTCAACAGT
GGTAAGCGAGGTTAATCAGC

Downstream 100 bases:

>100_bases
TCAGACAATCGATATAGAAAAGGTCAACCGAGGTTGACCTTTTTTGATCCAGAGACAAGAGGATTATTCTTCTTCGCTAC
TGGCTTTGGTGTCGGTTTGC

Product: putative permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MYQIYWTAFCSLLGKEINRFTRIWVQTLVPPAITMTLYFIIFGNLIGSRIGQMNGFSYMEYIVPGLIMMSVITNSYSNVA
SSFFSSKFQKNIEELLVAPVPNYVIIAGYVMGGVARGLLVGAMVTAVSLLFVDLQVDHWGIIIATVFLTSVVFSLGGLIN
AVFAKTFDDISIVPTFVLTPLTYLGGVFYSISLLPEFWQSVSKINPIVYMVNAFRYGFLGVSDVDIMTSFAVLMAFVVAL
YCVAHYLVTKGKGLRS

Sequences:

>Translated_256_residues
MYQIYWTAFCSLLGKEINRFTRIWVQTLVPPAITMTLYFIIFGNLIGSRIGQMNGFSYMEYIVPGLIMMSVITNSYSNVA
SSFFSSKFQKNIEELLVAPVPNYVIIAGYVMGGVARGLLVGAMVTAVSLLFVDLQVDHWGIIIATVFLTSVVFSLGGLIN
AVFAKTFDDISIVPTFVLTPLTYLGGVFYSISLLPEFWQSVSKINPIVYMVNAFRYGFLGVSDVDIMTSFAVLMAFVVAL
YCVAHYLVTKGKGLRS
>Mature_256_residues
MYQIYWTAFCSLLGKEINRFTRIWVQTLVPPAITMTLYFIIFGNLIGSRIGQMNGFSYMEYIVPGLIMMSVITNSYSNVA
SSFFSSKFQKNIEELLVAPVPNYVIIAGYVMGGVARGLLVGAMVTAVSLLFVDLQVDHWGIIIATVFLTSVVFSLGGLIN
AVFAKTFDDISIVPTFVLTPLTYLGGVFYSISLLPEFWQSVSKINPIVYMVNAFRYGFLGVSDVDIMTSFAVLMAFVVAL
YCVAHYLVTKGKGLRS

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1786320, Length=256, Percent_Identity=70.3125, Blast_Score=374, Evalue=1e-105,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 28323; Mature: 28323

Theoretical pI: Translated: 8.57; Mature: 8.57

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHCCCCCCC
>Mature Secondary Structure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HHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]