| Definition | Vibrio cholerae O395 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_009457 |
| Length | 3,024,069 |
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The map label for this gene is 147675683
Identifier: 147675683
GI number: 147675683
Start: 115637
End: 116989
Strand: Direct
Name: 147675683
Synonym: VC0395_A0129
Alternate gene names: NA
Gene position: 115637-116989 (Clockwise)
Preceding gene: 147674111
Following gene: 147673788
Centisome position: 3.82
GC content: 51.0
Gene sequence:
>1353_bases TTGCGTAAGTTTTTGAAAAATATAGCCCTATTTAAGGTTGTATTGCTGGCTGTTCTCGCGTTGTCAATTTGGTCTACCCG TATTCCCGATATGCCCTATCATCAAGTCACGCCTGAGTTGAGTCGGTCTGATTTCCATGTCATTGAATTTAATGATGAGG GTGAAATGCACCTGCCTAGGCAATACGAGATTTTGAAGGCGAGGTTAGCCAAAAACCCTGGAGCGGAACTGCTGATTTTT ATTCACGGTTGGCACCATAATGCGGCTCCCACTGACGATAATTTTGTCGCTTTTCAACGTTTTCATCGCCAGATGGCGAA GACCAATCCAGGCCTCATCGGGCTGTATATCGGTTGGCGGGGGGATCAATATGATCCCTTGTGGTTGGATGGTTCAGACG ATCCTGAAAGTCGAGTTGAAGCATTGGATTTTCCGACCATATTAACCAGCAAGCAGGTGGCGCGAAGAGTTGGCGAGCAT GGGGTGAGAAAGCTGCTGAGTTCGCTGGATAAATTGCATCGTCAAGGAACGCTAGGGCGCTATATTTTAGTTGGGCACAG CTTGGGTGGTGTGGTTGCGCTGCACGCCCGCAAACAGGCGATTTTGGATAATCTGGCGGCAGGTCGCGGTGAAACCCATT TAACGGTGCTTTTAAACCCCGCTGCCTCTGCCAAAGAGTATCAGCCATTGGATAAGTGGTTGAGTCCAGAAGGTTTTGGT CCATCCATGCTGGTGTTGCAGTCCAAAACCGATTTTGCGGTACGTGAGGCCTTTAACTGGATCAAAGATGGCGAGCGCGC CGTGGGTAACTCTTGGGCAATCACTCATGATGTGGACCCGTGCTCGGGGCGTGATTGTAATAAAGTGGTCAAAATCCCTC AGTGGCTGCTTGAGCACGATGCGAAACCGGGTTGCATGCAGGTATTGCAAGGGGCTGGCTGGAAAATTCGCGCCAGATTG CACGCCCGCAAAACCGTACAAAGTTGCGAAGATGCCAACCGTCAGGCTGTGTGGGTACTTGCTGTGGCCGATGGTGTGAT TGCTGGCCATAACGGCATTTTAACGGATGATCAGGCATTAGCTTTGAATGCTTGGATGAAGTCTAAGCTCACGGCAGCAA CCGAAGTTGTTCCTACTGAAGCCGTGGCGGAGCCCAGTGTTATCTCTCCCCATCTTAGCGATGAGCCTGTGCTGCCGAGC ATGGAAAACATACCCACAGAGGTTGCAACTGAGCCGCTTTCAAGTGCGGTAGAGCTTGAGCCACAAGAGAGCGAGAGTGC TGTGCCAGCGATTTCTGAACCCACGCTTGAGGCACCTTTGGTTGCCCAACCGGAAGAGAGAGCACCACAGTAA
Upstream 100 bases:
>100_bases AGGTGAGAAAGTCCCTCATTCCGCCTCTGGTGAAGCATTGAAGTTGAACATATAATGGCCGCCCGCCCGAGTCTGGGTAT CTGTTTTTTGGTAAGCTTCC
Downstream 100 bases:
>100_bases GTTTTTTGTCTGCAGTACCTCTTGATAGGAATGCACTTTGGGCACGGACTCCGTTTTATGTACAATGGCGCGGCCATTTA ACCTTGTAGGAAGCGCCCTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 450; Mature: 450
Protein sequence:
>450_residues MRKFLKNIALFKVVLLAVLALSIWSTRIPDMPYHQVTPELSRSDFHVIEFNDEGEMHLPRQYEILKARLAKNPGAELLIF IHGWHHNAAPTDDNFVAFQRFHRQMAKTNPGLIGLYIGWRGDQYDPLWLDGSDDPESRVEALDFPTILTSKQVARRVGEH GVRKLLSSLDKLHRQGTLGRYILVGHSLGGVVALHARKQAILDNLAAGRGETHLTVLLNPAASAKEYQPLDKWLSPEGFG PSMLVLQSKTDFAVREAFNWIKDGERAVGNSWAITHDVDPCSGRDCNKVVKIPQWLLEHDAKPGCMQVLQGAGWKIRARL HARKTVQSCEDANRQAVWVLAVADGVIAGHNGILTDDQALALNAWMKSKLTAATEVVPTEAVAEPSVISPHLSDEPVLPS MENIPTEVATEPLSSAVELEPQESESAVPAISEPTLEAPLVAQPEERAPQ
Sequences:
>Translated_450_residues MRKFLKNIALFKVVLLAVLALSIWSTRIPDMPYHQVTPELSRSDFHVIEFNDEGEMHLPRQYEILKARLAKNPGAELLIF IHGWHHNAAPTDDNFVAFQRFHRQMAKTNPGLIGLYIGWRGDQYDPLWLDGSDDPESRVEALDFPTILTSKQVARRVGEH GVRKLLSSLDKLHRQGTLGRYILVGHSLGGVVALHARKQAILDNLAAGRGETHLTVLLNPAASAKEYQPLDKWLSPEGFG PSMLVLQSKTDFAVREAFNWIKDGERAVGNSWAITHDVDPCSGRDCNKVVKIPQWLLEHDAKPGCMQVLQGAGWKIRARL HARKTVQSCEDANRQAVWVLAVADGVIAGHNGILTDDQALALNAWMKSKLTAATEVVPTEAVAEPSVISPHLSDEPVLPS MENIPTEVATEPLSSAVELEPQESESAVPAISEPTLEAPLVAQPEERAPQ >Mature_450_residues MRKFLKNIALFKVVLLAVLALSIWSTRIPDMPYHQVTPELSRSDFHVIEFNDEGEMHLPRQYEILKARLAKNPGAELLIF IHGWHHNAAPTDDNFVAFQRFHRQMAKTNPGLIGLYIGWRGDQYDPLWLDGSDDPESRVEALDFPTILTSKQVARRVGEH GVRKLLSSLDKLHRQGTLGRYILVGHSLGGVVALHARKQAILDNLAAGRGETHLTVLLNPAASAKEYQPLDKWLSPEGFG PSMLVLQSKTDFAVREAFNWIKDGERAVGNSWAITHDVDPCSGRDCNKVVKIPQWLLEHDAKPGCMQVLQGAGWKIRARL HARKTVQSCEDANRQAVWVLAVADGVIAGHNGILTDDQALALNAWMKSKLTAATEVVPTEAVAEPSVISPHLSDEPVLPS MENIPTEVATEPLSSAVELEPQESESAVPAISEPTLEAPLVAQPEERAPQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 49699; Mature: 49699
Theoretical pI: Translated: 6.27; Mature: 6.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKFLKNIALFKVVLLAVLALSIWSTRIPDMPYHQVTPELSRSDFHVIEFNDEGEMHLPR CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCEEEEEECCCCCEECCH QYEILKARLAKNPGAELLIFIHGWHHNAAPTDDNFVAFQRFHRQMAKTNPGLIGLYIGWR HHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECC GDQYDPLWLDGSDDPESRVEALDFPTILTSKQVARRVGEHGVRKLLSSLDKLHRQGTLGR CCCCCCEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE YILVGHSLGGVVALHARKQAILDNLAAGRGETHLTVLLNPAASAKEYQPLDKWLSPEGFG EEEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHCCHHHHHCCCCCCC PSMLVLQSKTDFAVREAFNWIKDGERAVGNSWAITHDVDPCSGRDCNKVVKIPQWLLEHD CCEEEEECCCCHHHHHHHHHHHCCCHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCC AKPGCMQVLQGAGWKIRARLHARKTVQSCEDANRQAVWVLAVADGVIAGHNGILTDDQAL CCCHHHHHHHCCCEEEEEHHHHHHHHHHHHCCCCCEEEEEEEECCEEECCCCCCCCCCHH ALNAWMKSKLTAATEVVPTEAVAEPSVISPHLSDEPVLPSMENIPTEVATEPLSSAVELE HHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHEECC PQESESAVPAISEPTLEAPLVAQPEERAPQ CCCCCCCCCCCCCCCCCCCCCCCCHHCCCC >Mature Secondary Structure MRKFLKNIALFKVVLLAVLALSIWSTRIPDMPYHQVTPELSRSDFHVIEFNDEGEMHLPR CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCEEEEEECCCCCEECCH QYEILKARLAKNPGAELLIFIHGWHHNAAPTDDNFVAFQRFHRQMAKTNPGLIGLYIGWR HHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECC GDQYDPLWLDGSDDPESRVEALDFPTILTSKQVARRVGEHGVRKLLSSLDKLHRQGTLGR CCCCCCEEECCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE YILVGHSLGGVVALHARKQAILDNLAAGRGETHLTVLLNPAASAKEYQPLDKWLSPEGFG EEEEECCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHCCHHHHHCCCCCCC PSMLVLQSKTDFAVREAFNWIKDGERAVGNSWAITHDVDPCSGRDCNKVVKIPQWLLEHD CCEEEEECCCCHHHHHHHHHHHCCCHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCC AKPGCMQVLQGAGWKIRARLHARKTVQSCEDANRQAVWVLAVADGVIAGHNGILTDDQAL CCCHHHHHHHCCCEEEEEHHHHHHHHHHHHCCCCCEEEEEEEECCEEECCCCCCCCCCHH ALNAWMKSKLTAATEVVPTEAVAEPSVISPHLSDEPVLPSMENIPTEVATEPLSSAVELE HHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHEECC PQESESAVPAISEPTLEAPLVAQPEERAPQ CCCCCCCCCCCCCCCCCCCCCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA