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The map label for this gene is nlpD [H]

Identifier: 147673872

GI number: 147673872

Start: 54508

End: 55443

Strand: Direct

Name: nlpD [H]

Synonym: VC0395_A0061

Alternate gene names: 147673872

Gene position: 54508-55443 (Clockwise)

Preceding gene: 147675360

Following gene: 147674644

Centisome position: 1.8

GC content: 44.12

Gene sequence:

>936_bases
ATGACGCTTTACTCTTTCCGACTGGGCTTATTATTGTTTTGCAGCTTATTATTCGGCTGTACTGCACCTACGCCAGCACC
AGTCTCTGGATTGGGTAAAGATTACAACAAAGTTGAGCGTGGTAGTTACCGCGGAAGTTACTATGAAGTTAAAAAAGGCG
ACACGCTCTATTTTATTGCCTACCTCACAGATAAAGATGTAAATGATCTGATCAGTTACAACGATCTCGCTCCACCTTAC
ACCATTCATCCTGGGCAAAAAATTAAGCTCTGGTTACCTAATTATACTCCTCCTGCTTATGGTGGAACGGGCGGTGCAGC
TACCGTGGCTGTGGCTTCAAGCACAAGTGCAAGTGTTGCCAAAGCGGCGACGACGGCAACAGTTGCTCAAACCGTGAGCA
AAAGCTCTAATACCAAAAATGTACAAAATGGGTCAACGAATAGTCAAAATTTGACTAAAAAAGATCCAGTTAAGACGGTT
GATCAAACAAAAACAAAGGAGTATGTTGAACCTGTCGGTAAACAAAATGTTAATGTTAATGTAGCAAAAGCTAAACCTTC
GGATGAGAAGATAGCGAAGTGGCTATGGCCGACAAAAGGTAGAGTCATAAAGAACTTTTCTGCGGGCGATCAAGGCAACA
AAGGGATAGACATTGCTGGCCAACGTGGTCAGGCTGTCGTTGCTACTGCAGATGGAACCGTAGTGTATTCGGGCAACGCA
TTACGTGGTTATGGCAACCTAATCATCATAAAACATAATGAGCACTATTTAAGTGCCTATGCCCACAATGATCAGCTGCT
AGCAAAGGAAGGACAAACTGTGCAAGCAGGCCAGAAGATCGCCACCATGGGAAGTTCTGGTACCAACAGCGTACGCTTGC
ACTTTGAGATCCGTTATCAAGGGAAGTCAGTGAATCCTAAACGCTACTTACCTTAA

Upstream 100 bases:

>100_bases
AGCAATATCTGTACAAAATTGTGCGTCAAGGTGGGCAGTTTATCTCTGAGCGGGTTGAAGCTGTGCGTTTTGTGCCACTG
GTCGCGGGAGATCTTGCCTG

Downstream 100 bases:

>100_bases
CTCATATTGCTAAGGTCATACTGCAAAGGTTGTAAATCGCAATGACTCGCAAAGTTGCCAGGGGGAGGCCGCTATGAGTG
TCAGCAATACCGTAACCAAA

Product: lipoprotein NlpD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 310

Protein sequence:

>311_residues
MTLYSFRLGLLLFCSLLFGCTAPTPAPVSGLGKDYNKVERGSYRGSYYEVKKGDTLYFIAYLTDKDVNDLISYNDLAPPY
TIHPGQKIKLWLPNYTPPAYGGTGGAATVAVASSTSASVAKAATTATVAQTVSKSSNTKNVQNGSTNSQNLTKKDPVKTV
DQTKTKEYVEPVGKQNVNVNVAKAKPSDEKIAKWLWPTKGRVIKNFSAGDQGNKGIDIAGQRGQAVVATADGTVVYSGNA
LRGYGNLIIIKHNEHYLSAYAHNDQLLAKEGQTVQAGQKIATMGSSGTNSVRLHFEIRYQGKSVNPKRYLP

Sequences:

>Translated_311_residues
MTLYSFRLGLLLFCSLLFGCTAPTPAPVSGLGKDYNKVERGSYRGSYYEVKKGDTLYFIAYLTDKDVNDLISYNDLAPPY
TIHPGQKIKLWLPNYTPPAYGGTGGAATVAVASSTSASVAKAATTATVAQTVSKSSNTKNVQNGSTNSQNLTKKDPVKTV
DQTKTKEYVEPVGKQNVNVNVAKAKPSDEKIAKWLWPTKGRVIKNFSAGDQGNKGIDIAGQRGQAVVATADGTVVYSGNA
LRGYGNLIIIKHNEHYLSAYAHNDQLLAKEGQTVQAGQKIATMGSSGTNSVRLHFEIRYQGKSVNPKRYLP
>Mature_310_residues
TLYSFRLGLLLFCSLLFGCTAPTPAPVSGLGKDYNKVERGSYRGSYYEVKKGDTLYFIAYLTDKDVNDLISYNDLAPPYT
IHPGQKIKLWLPNYTPPAYGGTGGAATVAVASSTSASVAKAATTATVAQTVSKSSNTKNVQNGSTNSQNLTKKDPVKTVD
QTKTKEYVEPVGKQNVNVNVAKAKPSDEKIAKWLWPTKGRVIKNFSAGDQGNKGIDIAGQRGQAVVATADGTVVYSGNAL
RGYGNLIIIKHNEHYLSAYAHNDQLLAKEGQTVQAGQKIATMGSSGTNSVRLHFEIRYQGKSVNPKRYLP

Specific function: May be involved in stationary-phase survival [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=279, Percent_Identity=46.9534050179211, Blast_Score=239, Evalue=2e-64,
Organism=Escherichia coli, GI87082174, Length=307, Percent_Identity=38.7622149837134, Blast_Score=200, Evalue=1e-52,
Organism=Escherichia coli, GI87082297, Length=120, Percent_Identity=38.3333333333333, Blast_Score=78, Evalue=7e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 33507; Mature: 33376

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLYSFRLGLLLFCSLLFGCTAPTPAPVSGLGKDYNKVERGSYRGSYYEVKKGDTLYFIA
CEEEHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCHHHHHCCCCCCCEEEEECCCEEEEEE
YLTDKDVNDLISYNDLAPPYTIHPGQKIKLWLPNYTPPAYGGTGGAATVAVASSTSASVA
EECCCCHHHHHCCCCCCCCEEECCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCHHH
KAATTATVAQTVSKSSNTKNVQNGSTNSQNLTKKDPVKTVDQTKTKEYVEPVGKQNVNVN
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEE
VAKAKPSDEKIAKWLWPTKGRVIKNFSAGDQGNKGIDIAGQRGQAVVATADGTVVYSGNA
EEECCCCHHHHHHHCCCCCCCEEEECCCCCCCCCCEEEECCCCCEEEEECCCEEEEECCE
LRGYGNLIIIKHNEHYLSAYAHNDQLLAKEGQTVQAGQKIATMGSSGTNSVRLHFEIRYQ
EECCCCEEEEEECCEEEEEEECCCEEEECCCCEECCCCEEEECCCCCCCEEEEEEEEEEC
GKSVNPKRYLP
CCCCCCCCCCC
>Mature Secondary Structure 
TLYSFRLGLLLFCSLLFGCTAPTPAPVSGLGKDYNKVERGSYRGSYYEVKKGDTLYFIA
EEEHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCHHHHHCCCCCCCEEEEECCCEEEEEE
YLTDKDVNDLISYNDLAPPYTIHPGQKIKLWLPNYTPPAYGGTGGAATVAVASSTSASVA
EECCCCHHHHHCCCCCCCCEEECCCCEEEEECCCCCCCCCCCCCCCEEEEEECCCCCHHH
KAATTATVAQTVSKSSNTKNVQNGSTNSQNLTKKDPVKTVDQTKTKEYVEPVGKQNVNVN
HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEE
VAKAKPSDEKIAKWLWPTKGRVIKNFSAGDQGNKGIDIAGQRGQAVVATADGTVVYSGNA
EEECCCCHHHHHHHCCCCCCCEEEECCCCCCCCCCEEEECCCCCEEEEECCCEEEEECCE
LRGYGNLIIIKHNEHYLSAYAHNDQLLAKEGQTVQAGQKIATMGSSGTNSVRLHFEIRYQ
EECCCCEEEEEECCEEEEEEECCCEEEECCCCEECCCCEEEECCCCCCCEEEEEEEEEEC
GKSVNPKRYLP
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9973354 [H]