| Definition | Vibrio cholerae O395 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_009457 |
| Length | 3,024,069 |
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The map label for this gene is 147673361
Identifier: 147673361
GI number: 147673361
Start: 38753
End: 40513
Strand: Reverse
Name: 147673361
Synonym: VC0395_A0042
Alternate gene names: NA
Gene position: 40513-38753 (Counterclockwise)
Preceding gene: 147674012
Following gene: 147675186
Centisome position: 1.34
GC content: 48.32
Gene sequence:
>1761_bases ATGCTTTCTACTTCTCCATTTGTTCTGCCACGAAAAACCCCATTTGGTTTAGGTGAACACTTAGCGGAATGGGCAACAGG ACTGAAACGTCTCAATCAATTCTATGCTCAACGTCCAGCAAGCGGTGATACTCAAGCGTTTTTGCGCTTTACCTTGGATG TTCTTGGTATCGATTATCAAGTAGTACGCGGCAAGCTCACACATGTTCCAGCTCAAGGGGCAACTATCGTGGTCGCTAAC CATCCTTTAGGCTGCGTTGAAGGGGTGATTTTGGCTGAGCTGCTGCTTTGCGTTCGCTCAGATGTAAAAATTCTCGCTAA TCAGTATTTAAAGCTGGTGCCCGAGCTTACCTCACTATTTATCGGCGTCGATGTGTTTGAAGGTGCCGATGCCGCAAAAG CGAATCTGCATGCCCTTCGTCAAGCGCATAAACACCTTGAGCAAGGTGGGTTGCTACTGATGTTTCCTGCTGGGGAAGTC TCCCAATTGGTTGACAGCAAGCAAGGTCGTTTGGAGGACAAAGAGTGGAGCCAATCGGTCAGCCGCCTCGTTAAAAAACA TCAAGCGCATACGGTCCCAGTTTATATTGATGGCCATAACTCAACCCCTTTTTACCTTGCAGGAAAAATTCACCCTATGC TGCGCACCTTGATGTTGGGGCGCGAGCTGCTCAATAAGCAGCATACTCAAATTGGTATCGCGATTGGTGAGGGGATTTCA CACAGCGAAGTACAGCATCTTTGTGATCAACAGTTGGTCAATTATCTGCGCCTCAATACCTATCTTTTGCAATCTTCTCC CGTGCGCAACAAGACCGCCAGTGATCGATCCTTGCCTCCCGTTGCAGAGCGCCTTCCATTAGCCGATCTGCTCGAAGATA TCGCGCAGTTGCCTTACGCCGACCATATGCTGCGCCATAACCAATTTGATGTGTATTGCACCACAGCGGATAACATTCCT TCGTTGATGCATGAAATTGGCCGCATTCGCGAGTTGAATTTCCGTGAGGTGGGCGAAGGAACGGGCTGTGCGCTGGATAT TGATCGATTTGATCGCGATTACCTTCACCTATTCATTTGGGATAGAGAGAAAAATCAGCTGGTGGGCGCATACCGTTTAG GGCTCGTTGATAAGCTTATTGAGCACAAGGGGATCAGCGGCCTCTACTCCAGTACCCTATTTCATTATGATCAACGCTTC CTCAATAACATGGGCAATGCGATTGAAATGGGGCGTTCGGTGATTGACAGCCAATATCAAAAAAGCATGGCGGCCCTGCT TTTGCTTTGGAAAGGCATTGGTACTTATGTCGAACGCCACCCACAATATACCCACCTTTTTGGCCCTGTGAGTATCAGCA ACGATTACAGTGAACAAGCCAGACGTTTACTCGCCGATACCATGACTCTGCATTATTACGATAGTGAACAAGCCGAGTTA GTGATGGCCACCAACCCTCTACCTACAGGGCAAGCACAATGGAATGCCAGCCTTTTGACGTCACTTGCCGACTTGCAACT CCTGTCACGAGTGATTGCTCGGATCGATGAAGGAAAGGGAATTCCGGTGCTACTACGCCAGTATCTAGGATTAAACGGAA AGCTGGTGAGCTTTAATGTGGATCCTGCGTTCAATAACGCACTAGATGGCTTGATCGTAGTTGATCTTCGCAATGTGCCC ACGAAAACCTTAGCGCGTTACATGGGGCAATCTGAAGCTCTGCGCTATCTTGCCACCCACCAATATTTCAGCGATATCTA A
Upstream 100 bases:
>100_bases GTTCAAGGATATTCCGCGCAACAAAAAGCTCATCAGACTGTCGCGATTTTGCAATATGTAGCCTCTAGCCTCTTGGTAAA CCATCACATAAGAGGTTGCT
Downstream 100 bases:
>100_bases CCCATCACGCCAAGGTGCTTCATCTTGGCGTGACCCATCAAACATTTCTGGAATCAAAATAAAATGCTATCGAGTCAAAA TTTCCTCTCAATATCGCCAG
Product: hypothetical protein
Products: NA
Alternate protein names: Hemolysin; Acyltransferase Domain Protein; Acyltransferase Family Protein; Acyltransferase Domain-Containing Protein; Hemolysin A; Acyltransferase; Phosphate Acyltransferase Family Protein; Acyltransferase Protein; DNA Polymerase III Subunit Alpha; Acetyltransferase; Phospholipid/Glycerol Acyltransferase Hemolysin; Sulfolipid Biosynthesis Protein SqdA
Number of amino acids: Translated: 586; Mature: 586
Protein sequence:
>586_residues MLSTSPFVLPRKTPFGLGEHLAEWATGLKRLNQFYAQRPASGDTQAFLRFTLDVLGIDYQVVRGKLTHVPAQGATIVVAN HPLGCVEGVILAELLLCVRSDVKILANQYLKLVPELTSLFIGVDVFEGADAAKANLHALRQAHKHLEQGGLLLMFPAGEV SQLVDSKQGRLEDKEWSQSVSRLVKKHQAHTVPVYIDGHNSTPFYLAGKIHPMLRTLMLGRELLNKQHTQIGIAIGEGIS HSEVQHLCDQQLVNYLRLNTYLLQSSPVRNKTASDRSLPPVAERLPLADLLEDIAQLPYADHMLRHNQFDVYCTTADNIP SLMHEIGRIRELNFREVGEGTGCALDIDRFDRDYLHLFIWDREKNQLVGAYRLGLVDKLIEHKGISGLYSSTLFHYDQRF LNNMGNAIEMGRSVIDSQYQKSMAALLLLWKGIGTYVERHPQYTHLFGPVSISNDYSEQARRLLADTMTLHYYDSEQAEL VMATNPLPTGQAQWNASLLTSLADLQLLSRVIARIDEGKGIPVLLRQYLGLNGKLVSFNVDPAFNNALDGLIVVDLRNVP TKTLARYMGQSEALRYLATHQYFSDI
Sequences:
>Translated_586_residues MLSTSPFVLPRKTPFGLGEHLAEWATGLKRLNQFYAQRPASGDTQAFLRFTLDVLGIDYQVVRGKLTHVPAQGATIVVAN HPLGCVEGVILAELLLCVRSDVKILANQYLKLVPELTSLFIGVDVFEGADAAKANLHALRQAHKHLEQGGLLLMFPAGEV SQLVDSKQGRLEDKEWSQSVSRLVKKHQAHTVPVYIDGHNSTPFYLAGKIHPMLRTLMLGRELLNKQHTQIGIAIGEGIS HSEVQHLCDQQLVNYLRLNTYLLQSSPVRNKTASDRSLPPVAERLPLADLLEDIAQLPYADHMLRHNQFDVYCTTADNIP SLMHEIGRIRELNFREVGEGTGCALDIDRFDRDYLHLFIWDREKNQLVGAYRLGLVDKLIEHKGISGLYSSTLFHYDQRF LNNMGNAIEMGRSVIDSQYQKSMAALLLLWKGIGTYVERHPQYTHLFGPVSISNDYSEQARRLLADTMTLHYYDSEQAEL VMATNPLPTGQAQWNASLLTSLADLQLLSRVIARIDEGKGIPVLLRQYLGLNGKLVSFNVDPAFNNALDGLIVVDLRNVP TKTLARYMGQSEALRYLATHQYFSDI >Mature_586_residues MLSTSPFVLPRKTPFGLGEHLAEWATGLKRLNQFYAQRPASGDTQAFLRFTLDVLGIDYQVVRGKLTHVPAQGATIVVAN HPLGCVEGVILAELLLCVRSDVKILANQYLKLVPELTSLFIGVDVFEGADAAKANLHALRQAHKHLEQGGLLLMFPAGEV SQLVDSKQGRLEDKEWSQSVSRLVKKHQAHTVPVYIDGHNSTPFYLAGKIHPMLRTLMLGRELLNKQHTQIGIAIGEGIS HSEVQHLCDQQLVNYLRLNTYLLQSSPVRNKTASDRSLPPVAERLPLADLLEDIAQLPYADHMLRHNQFDVYCTTADNIP SLMHEIGRIRELNFREVGEGTGCALDIDRFDRDYLHLFIWDREKNQLVGAYRLGLVDKLIEHKGISGLYSSTLFHYDQRF LNNMGNAIEMGRSVIDSQYQKSMAALLLLWKGIGTYVERHPQYTHLFGPVSISNDYSEQARRLLADTMTLHYYDSEQAEL VMATNPLPTGQAQWNASLLTSLADLQLLSRVIARIDEGKGIPVLLRQYLGLNGKLVSFNVDPAFNNALDGLIVVDLRNVP TKTLARYMGQSEALRYLATHQYFSDI
Specific function: Unknown
COG id: COG3176
COG function: function code R; Putative hemolysin
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 65722; Mature: 65722
Theoretical pI: Translated: 7.04; Mature: 7.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSTSPFVLPRKTPFGLGEHLAEWATGLKRLNQFYAQRPASGDTQAFLRFTLDVLGIDYQ CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHH VVRGKLTHVPAQGATIVVANHPLGCVEGVILAELLLCVRSDVKILANQYLKLVPELTSLF HHHCHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IGVDVFEGADAAKANLHALRQAHKHLEQGGLLLMFPAGEVSQLVDSKQGRLEDKEWSQSV HHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCCCCCCCCHHHHHHH SRLVKKHQAHTVPVYIDGHNSTPFYLAGKIHPMLRTLMLGRELLNKQHTQIGIAIGEGIS HHHHHHHCCCEEEEEEECCCCCCEEEECCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCC HSEVQHLCDQQLVNYLRLNTYLLQSSPVRNKTASDRSLPPVAERLPLADLLEDIAQLPYA HHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHCCCH DHMLRHNQFDVYCTTADNIPSLMHEIGRIRELNFREVGEGTGCALDIDRFDRDYLHLFIW HHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCHHHCCCCCCCEEEHHHCCCCEEEEEEE DREKNQLVGAYRLGLVDKLIEHKGISGLYSSTLFHYDQRFLNNMGNAIEMGRSVIDSQYQ ECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH KSMAALLLLWKGIGTYVERHPQYTHLFGPVSISNDYSEQARRLLADTMTLHYYDSEQAEL HHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHEEEEECCCCCEE VMATNPLPTGQAQWNASLLTSLADLQLLSRVIARIDEGKGIPVLLRQYLGLNGKLVSFNV EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCEEEEEEC DPAFNNALDGLIVVDLRNVPTKTLARYMGQSEALRYLATHQYFSDI CCCHHCCCCCEEEEEECCCCHHHHHHHHCHHHHHHHHHHHHHHHCC >Mature Secondary Structure MLSTSPFVLPRKTPFGLGEHLAEWATGLKRLNQFYAQRPASGDTQAFLRFTLDVLGIDYQ CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHH VVRGKLTHVPAQGATIVVANHPLGCVEGVILAELLLCVRSDVKILANQYLKLVPELTSLF HHHCHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IGVDVFEGADAAKANLHALRQAHKHLEQGGLLLMFPAGEVSQLVDSKQGRLEDKEWSQSV HHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHCCCCCCCCCHHHHHHH SRLVKKHQAHTVPVYIDGHNSTPFYLAGKIHPMLRTLMLGRELLNKQHTQIGIAIGEGIS HHHHHHHCCCEEEEEEECCCCCCEEEECCHHHHHHHHHHHHHHHCCHHHEEEEEECCCCC HSEVQHLCDQQLVNYLRLNTYLLQSSPVRNKTASDRSLPPVAERLPLADLLEDIAQLPYA HHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHCCCH DHMLRHNQFDVYCTTADNIPSLMHEIGRIRELNFREVGEGTGCALDIDRFDRDYLHLFIW HHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCHHHCCCCCCCEEEHHHCCCCEEEEEEE DREKNQLVGAYRLGLVDKLIEHKGISGLYSSTLFHYDQRFLNNMGNAIEMGRSVIDSQYQ ECCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH KSMAALLLLWKGIGTYVERHPQYTHLFGPVSISNDYSEQARRLLADTMTLHYYDSEQAEL HHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHEEEEECCCCCEE VMATNPLPTGQAQWNASLLTSLADLQLLSRVIARIDEGKGIPVLLRQYLGLNGKLVSFNV EEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCEEEEEEC DPAFNNALDGLIVVDLRNVPTKTLARYMGQSEALRYLATHQYFSDI CCCHHCCCCCEEEEEECCCCHHHHHHHHCHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA