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The map label for this gene is pocR [H]

Identifier: 146343423

GI number: 146343423

Start: 6907845

End: 6908759

Strand: Direct

Name: pocR [H]

Synonym: BRADO6652

Alternate gene names: 146343423

Gene position: 6907845-6908759 (Clockwise)

Preceding gene: 146343420

Following gene: 146343424

Centisome position: 92.64

GC content: 65.57

Gene sequence:

>915_bases
ATGCGCACAGTCAGGCAGGAGGCGGCTCTCGTCGACGGTTTGTGGTCGTCACATCTCGTCGCAACGACATCGTTCGAGAG
CGCGTCGGGCGCGATGCTGCGTCATTGCCGCTCTGACGATCTCGAAGAGATCAACGGTCCCTGCATCGACGCCACGATGT
TCTGCCTGCAGCTGCGACCGACCTCGGTCACGATCTGGCAGAACGAGCGTCAGGTCCATGACGGTCCGGTACCGATCGGT
CTGTGGCAGGCGCATGCGCCGGGCGACAGCTTCCGCGCCGCGCGAGGAACCGGCTTCGAGTGCATTCGCCTGATGCTATC
GAACGGCGCGCTGGCGCAAGGTCTCGCGCAATTCGGCTGCCACGCCGCCGCCTCGCAGATCGAGTTCGCGAGTGTCGGTC
ACGACCCCAATGGCGTCCTGCTGTCGCTGTCCCGCGAGCTGCGGCGCGCGCTTCTCGGCAGCAGCGGCTCCGCGGTCGAA
CAATCCTACCTGGAAAGCCTGGCGACCACACTGTTCGGGCATCTGTTGATCCACCACTCGAATCGCGCAGACGCAGCGTT
CGCCAAGCCGCTGCGTGGCAACCCCCGCATCGAGGATCGGCGGCTCAGGCAGCTCGTCGACTATTTCGACAGCCGGCTCG
GCGAGAGTCTCTCGGTGGCGGACCTCGCCGCATTTCTCGATCTGTCGGTACCGCATCTGACAGAGCTGTTCCGGCGCGGG
CTCGGCAGCTCGCCCTATCGCTGGATGATGCAGCGTCGGATCGAGCGCGCCCGCGCGCTGCTCGCCGAGCGCGATCACTC
CATCACCGATATCGCTCTCGCGCTCGGGTTCGCGTCGTCGCAGCATTTCGCCACGGCGTTTCGCAAGGCCTGCGGCCTGA
CACCATCGGAATACCGCAAGCAGCTGTCGTCCTGA

Upstream 100 bases:

>100_bases
ACCGTGACATGCGCCGGCGGGCCGGCCGCGCTTGCGCCTTGGCAGCAAGTGTGGTGATTTTCCGCTGCCGGTCGTTGTTT
CCAGGACGTTCGGAAGGCAT

Downstream 100 bases:

>100_bases
CGAAGCCTGGCGTTCGGCGCGAAGCCGGCCAGCGGATTTTGTACATGGTCCGCGATCCGTGAACGCGCGTCGCATGGCTC
GCTCGCATAGTCGCAGCGCT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MRTVRQEAALVDGLWSSHLVATTSFESASGAMLRHCRSDDLEEINGPCIDATMFCLQLRPTSVTIWQNERQVHDGPVPIG
LWQAHAPGDSFRAARGTGFECIRLMLSNGALAQGLAQFGCHAAASQIEFASVGHDPNGVLLSLSRELRRALLGSSGSAVE
QSYLESLATTLFGHLLIHHSNRADAAFAKPLRGNPRIEDRRLRQLVDYFDSRLGESLSVADLAAFLDLSVPHLTELFRRG
LGSSPYRWMMQRRIERARALLAERDHSITDIALALGFASSQHFATAFRKACGLTPSEYRKQLSS

Sequences:

>Translated_304_residues
MRTVRQEAALVDGLWSSHLVATTSFESASGAMLRHCRSDDLEEINGPCIDATMFCLQLRPTSVTIWQNERQVHDGPVPIG
LWQAHAPGDSFRAARGTGFECIRLMLSNGALAQGLAQFGCHAAASQIEFASVGHDPNGVLLSLSRELRRALLGSSGSAVE
QSYLESLATTLFGHLLIHHSNRADAAFAKPLRGNPRIEDRRLRQLVDYFDSRLGESLSVADLAAFLDLSVPHLTELFRRG
LGSSPYRWMMQRRIERARALLAERDHSITDIALALGFASSQHFATAFRKACGLTPSEYRKQLSS
>Mature_304_residues
MRTVRQEAALVDGLWSSHLVATTSFESASGAMLRHCRSDDLEEINGPCIDATMFCLQLRPTSVTIWQNERQVHDGPVPIG
LWQAHAPGDSFRAARGTGFECIRLMLSNGALAQGLAQFGCHAAASQIEFASVGHDPNGVLLSLSRELRRALLGSSGSAVE
QSYLESLATTLFGHLLIHHSNRADAAFAKPLRGNPRIEDRRLRQLVDYFDSRLGESLSVADLAAFLDLSVPHLTELFRRG
LGSSPYRWMMQRRIERARALLAERDHSITDIALALGFASSQHFATAFRKACGLTPSEYRKQLSS

Specific function: Positive regulatory protein of pdu and cob operons [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790559, Length=97, Percent_Identity=32.9896907216495, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786251, Length=141, Percent_Identity=30.4964539007092, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR018771 [H]

Pfam domain/function: PF10114 Hist_Kin_Sens; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33441; Mature: 33441

Theoretical pI: Translated: 7.92; Mature: 7.92

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTVRQEAALVDGLWSSHLVATTSFESASGAMLRHCRSDDLEEINGPCIDATMFCLQLRP
CCCHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHCCCCHHHHCCCHHHHHHHHHEECC
TSVTIWQNERQVHDGPVPIGLWQAHAPGDSFRAARGTGFECIRLMLSNGALAQGLAQFGC
CEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHH
HAAASQIEFASVGHDPNGVLLSLSRELRRALLGSSGSAVEQSYLESLATTLFGHLLIHHS
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC
NRADAAFAKPLRGNPRIEDRRLRQLVDYFDSRLGESLSVADLAAFLDLSVPHLTELFRRG
CCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHC
LGSSPYRWMMQRRIERARALLAERDHSITDIALALGFASSQHFATAFRKACGLTPSEYRK
CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHH
QLSS
HHCC
>Mature Secondary Structure
MRTVRQEAALVDGLWSSHLVATTSFESASGAMLRHCRSDDLEEINGPCIDATMFCLQLRP
CCCHHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHCCCCHHHHCCCHHHHHHHHHEECC
TSVTIWQNERQVHDGPVPIGLWQAHAPGDSFRAARGTGFECIRLMLSNGALAQGLAQFGC
CEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHH
HAAASQIEFASVGHDPNGVLLSLSRELRRALLGSSGSAVEQSYLESLATTLFGHLLIHHS
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC
NRADAAFAKPLRGNPRIEDRRLRQLVDYFDSRLGESLSVADLAAFLDLSVPHLTELFRRG
CCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHC
LGSSPYRWMMQRRIERARALLAERDHSITDIALALGFASSQHFATAFRKACGLTPSEYRK
CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHH
QLSS
HHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8071226; 9352910; 11677609; 8501034 [H]