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The map label for this gene is ddpA [H]

Identifier: 146343420

GI number: 146343420

Start: 6902984

End: 6904603

Strand: Direct

Name: ddpA [H]

Synonym: BRADO6649

Alternate gene names: 146343420

Gene position: 6902984-6904603 (Clockwise)

Preceding gene: 146343419

Following gene: 146343423

Centisome position: 92.58

GC content: 64.07

Gene sequence:

>1620_bases
ATGAGCAGCTCGTATGTCGATGTCACACGCCGCAGCGTCGTTCTCGGCGGATTGGGGGCTGCCGGCGTGAGCGCGCTCGG
GCCGCGCATCGCGCAAGCGCAAGGCCGCGCCGAAACGCTGCTGGTGGTGCAGGAACTCGGGCCGAACTCGCTGGACATGC
AGGGCGTGGGCTCGAACCAAACGGTCAACGGTCTCGCCTGGAACTGCTATGACCGGCTGCTGAGCTACGCGGCGAAGACG
CTGCCGGACGGCACCATCTCGTACGATCGCGCCACCTTGGCGCCGGAGCTCGCCGAGAGCTGGGAGGTCGCCGCCGACGG
CATGTCCTGCACCTTCAAGCTGCGCAACGACGCAACCTTTCACGACGGCACGCCGGTGACGGCCAAGGATGTGAAATGGT
CGTTCGATCGCGCCGTCTCGGTTGGTGGCTTTCCGACCTTCCAGATGTCGGCGGGCTCGCTGGAGAAGCCGGAGCAGTTC
GTCTTGGTCGACGATCACACCTTCCGCATCGACTACATCCGCAAGGACAAGATGCTGCTGTTCAATGTCGCGGTGGTCGT
GCCCTTCGTGATCAATTCGGAGCTCGCGAAGAAGAACGCGACGCCCGAGGACCCGTGGGCGCTGGCCTGGCTGAAGAACA
ACGAGGCCGGCGGCGGCGCCTACAAGGTGGAGAGCTGGAAGGCCGGCACCGAGACGATCCTGAGCCGGTTCGACGGCTGG
AGGTGCGGCCCGCTGCCGAAGATCAAGCGCGTCATCGCGCGCGACATTCCCTCCGCCGGCACGCGGCGGGCGATGCTCGA
GCGCGGCGATGCCGACCTCTCCAGCGGCTTTGCGCCGCGCGACTTCGACCAGTTGATCAAGGAGGGCAAGGTCAAGGTCA
CGGGCGTTCCGATCCCGAACGCGCTGTGGTACGTCGCACTGAACACGGCCAGGCCGCCATTCGACAATGTCAAGCTGCGC
CAGGCGATCGCCTGGGCAATGCCCTATGAACAGATCCAATCCAGCGCGTTCTTCGGCCGCGCGGTGCCGATGTATGGCGG
CAAGGCTGAGGTGGAGAAGCCGGTATGGCCGCAGCCGTTCCCTTATGTCACCGACCTCGACAAGGCCAAGGCGCTGATGA
AGGAGGCCGGATTCGAAGGCCTGGAGACGACCTTGTCGCTCGACGCCGGCACCGCGACAGTCGGCGAGCCCACCGCGATC
CTGATCCAGGAGAACCTCGCCAAGATCGGCATCAAGGCGGGCATCGAGAAGATTCCCGGTGCCAACTGGCGCACGACCTT
GAACAAGAAGGAGCTTCCGATGGCGCTCAACCGGTTCTCGGGCTGGCTCGATTATCCCGAATACTACTTCTATTGGAATT
TCCACGGCCGCAATTCGATCTTCAACATCTCGTCCTACCAGAGCAAGGAGATGGACGCGCTGATCGACAAGGCGCGCTTC
ACGACGGATGCGGCGGAGTACGAGGCGACGGTGAAGGAGTTCATCGCACTGTGCATGCGCGAGGTTCCGGTGGTGCCGCT
CAACCAGCCGATCCACGACGTCGCCATGCAGAAAGCGGTGAGCGGCTACGAGTTCTGGTTCCACCGCGAGCCGGACTATC
GGCAGTTCGCGAAGGGGTAG

Upstream 100 bases:

>100_bases
TGGTCGGCGCACCAGGGTCGATCCGCCGCGGCGTGAGCGCGCGGCATGGCATGCGCCTTGCCTCCACAGCTGCAACCGAT
CGTGCCGCAGGGAGGTCTCA

Downstream 100 bases:

>100_bases
CGTGTTGGTCGGGAAAGACCGAGGTAACGCGCTCGGCCACATGATCACCTCTCGCCACGCTGGCGACATACTCTATCCCT
TCCAGTCCACAACGGTGGTG

Product: putative ABC transporter periplasmic binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 539; Mature: 538

Protein sequence:

>539_residues
MSSSYVDVTRRSVVLGGLGAAGVSALGPRIAQAQGRAETLLVVQELGPNSLDMQGVGSNQTVNGLAWNCYDRLLSYAAKT
LPDGTISYDRATLAPELAESWEVAADGMSCTFKLRNDATFHDGTPVTAKDVKWSFDRAVSVGGFPTFQMSAGSLEKPEQF
VLVDDHTFRIDYIRKDKMLLFNVAVVVPFVINSELAKKNATPEDPWALAWLKNNEAGGGAYKVESWKAGTETILSRFDGW
RCGPLPKIKRVIARDIPSAGTRRAMLERGDADLSSGFAPRDFDQLIKEGKVKVTGVPIPNALWYVALNTARPPFDNVKLR
QAIAWAMPYEQIQSSAFFGRAVPMYGGKAEVEKPVWPQPFPYVTDLDKAKALMKEAGFEGLETTLSLDAGTATVGEPTAI
LIQENLAKIGIKAGIEKIPGANWRTTLNKKELPMALNRFSGWLDYPEYYFYWNFHGRNSIFNISSYQSKEMDALIDKARF
TTDAAEYEATVKEFIALCMREVPVVPLNQPIHDVAMQKAVSGYEFWFHREPDYRQFAKG

Sequences:

>Translated_539_residues
MSSSYVDVTRRSVVLGGLGAAGVSALGPRIAQAQGRAETLLVVQELGPNSLDMQGVGSNQTVNGLAWNCYDRLLSYAAKT
LPDGTISYDRATLAPELAESWEVAADGMSCTFKLRNDATFHDGTPVTAKDVKWSFDRAVSVGGFPTFQMSAGSLEKPEQF
VLVDDHTFRIDYIRKDKMLLFNVAVVVPFVINSELAKKNATPEDPWALAWLKNNEAGGGAYKVESWKAGTETILSRFDGW
RCGPLPKIKRVIARDIPSAGTRRAMLERGDADLSSGFAPRDFDQLIKEGKVKVTGVPIPNALWYVALNTARPPFDNVKLR
QAIAWAMPYEQIQSSAFFGRAVPMYGGKAEVEKPVWPQPFPYVTDLDKAKALMKEAGFEGLETTLSLDAGTATVGEPTAI
LIQENLAKIGIKAGIEKIPGANWRTTLNKKELPMALNRFSGWLDYPEYYFYWNFHGRNSIFNISSYQSKEMDALIDKARF
TTDAAEYEATVKEFIALCMREVPVVPLNQPIHDVAMQKAVSGYEFWFHREPDYRQFAKG
>Mature_538_residues
SSSYVDVTRRSVVLGGLGAAGVSALGPRIAQAQGRAETLLVVQELGPNSLDMQGVGSNQTVNGLAWNCYDRLLSYAAKTL
PDGTISYDRATLAPELAESWEVAADGMSCTFKLRNDATFHDGTPVTAKDVKWSFDRAVSVGGFPTFQMSAGSLEKPEQFV
LVDDHTFRIDYIRKDKMLLFNVAVVVPFVINSELAKKNATPEDPWALAWLKNNEAGGGAYKVESWKAGTETILSRFDGWR
CGPLPKIKRVIARDIPSAGTRRAMLERGDADLSSGFAPRDFDQLIKEGKVKVTGVPIPNALWYVALNTARPPFDNVKLRQ
AIAWAMPYEQIQSSAFFGRAVPMYGGKAEVEKPVWPQPFPYVTDLDKAKALMKEAGFEGLETTLSLDAGTATVGEPTAIL
IQENLAKIGIKAGIEKIPGANWRTTLNKKELPMALNRFSGWLDYPEYYFYWNFHGRNSIFNISSYQSKEMDALIDKARFT
TDAAEYEATVKEFIALCMREVPVVPLNQPIHDVAMQKAVSGYEFWFHREPDYRQFAKG

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=525, Percent_Identity=27.2380952380952, Blast_Score=155, Evalue=8e-39,
Organism=Escherichia coli, GI1789966, Length=552, Percent_Identity=26.268115942029, Blast_Score=132, Evalue=5e-32,
Organism=Escherichia coli, GI1787052, Length=489, Percent_Identity=25.9713701431493, Blast_Score=112, Evalue=8e-26,
Organism=Escherichia coli, GI1787551, Length=509, Percent_Identity=27.3084479371316, Blast_Score=104, Evalue=2e-23,
Organism=Escherichia coli, GI1787495, Length=551, Percent_Identity=24.3194192377495, Blast_Score=96, Evalue=5e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 59703; Mature: 59571

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSSYVDVTRRSVVLGGLGAAGVSALGPRIAQAQGRAETLLVVQELGPNSLDMQGVGSNQ
CCCCCHHHHHHEEEEECCCHHHHHHHCCHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCC
TVNGLAWNCYDRLLSYAAKTLPDGTISYDRATLAPELAESWEVAADGMSCTFKLRNDATF
CCCCEEHHHHHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHHCCCCEEEEEECCCCCC
HDGTPVTAKDVKWSFDRAVSVGGFPTFQMSAGSLEKPEQFVLVDDHTFRIDYIRKDKMLL
CCCCCCCHHCCCCCHHHEEECCCCCEEEECCCCCCCCCEEEEECCCEEEEEEEECCCEEE
FNVAVVVPFVINSELAKKNATPEDPWALAWLKNNEAGGGAYKVESWKAGTETILSRFDGW
EHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCEEEECCCCCHHHHHHHHCCCC
RCGPLPKIKRVIARDIPSAGTRRAMLERGDADLSSGFAPRDFDQLIKEGKVKVTGVPIPN
CCCCCHHHHHHHHHCCCCCCHHHHHHHCCCCHHHCCCCCCCHHHHHHCCCEEEEECCCCC
ALWYVALNTARPPFDNVKLRQAIAWAMPYEQIQSSAFFGRAVPMYGGKAEVEKPVWPQPF
CEEEEEEECCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
PYVTDLDKAKALMKEAGFEGLETTLSLDAGTATVGEPTAILIQENLAKIGIKAGIEKIPG
CCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCEEEEEEHHHHHHHHHHHHHHCCC
ANWRTTLNKKELPMALNRFSGWLDYPEYYFYWNFHGRNSIFNISSYQSKEMDALIDKARF
CCCEECCCCCCCHHHHHHHCCCCCCCCEEEEEEEECCCCEEECCCCCCHHHHHHHHHHHC
TTDAAEYEATVKEFIALCMREVPVVPLNQPIHDVAMQKAVSGYEFWFHREPDYRQFAKG
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCHHHHCCC
>Mature Secondary Structure 
SSSYVDVTRRSVVLGGLGAAGVSALGPRIAQAQGRAETLLVVQELGPNSLDMQGVGSNQ
CCCCHHHHHHEEEEECCCHHHHHHHCCHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCC
TVNGLAWNCYDRLLSYAAKTLPDGTISYDRATLAPELAESWEVAADGMSCTFKLRNDATF
CCCCEEHHHHHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHHCCCCEEEEEECCCCCC
HDGTPVTAKDVKWSFDRAVSVGGFPTFQMSAGSLEKPEQFVLVDDHTFRIDYIRKDKMLL
CCCCCCCHHCCCCCHHHEEECCCCCEEEECCCCCCCCCEEEEECCCEEEEEEEECCCEEE
FNVAVVVPFVINSELAKKNATPEDPWALAWLKNNEAGGGAYKVESWKAGTETILSRFDGW
EHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCEEEECCCCCHHHHHHHHCCCC
RCGPLPKIKRVIARDIPSAGTRRAMLERGDADLSSGFAPRDFDQLIKEGKVKVTGVPIPN
CCCCCHHHHHHHHHCCCCCCHHHHHHHCCCCHHHCCCCCCCHHHHHHCCCEEEEECCCCC
ALWYVALNTARPPFDNVKLRQAIAWAMPYEQIQSSAFFGRAVPMYGGKAEVEKPVWPQPF
CEEEEEEECCCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
PYVTDLDKAKALMKEAGFEGLETTLSLDAGTATVGEPTAILIQENLAKIGIKAGIEKIPG
CCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCEEEEEEHHHHHHHHHHHHHHCCC
ANWRTTLNKKELPMALNRFSGWLDYPEYYFYWNFHGRNSIFNISSYQSKEMDALIDKARF
CCCEECCCCCCCHHHHHHHCCCCCCCCEEEEEEEECCCCEEECCCCCCHHHHHHHHHHHC
TTDAAEYEATVKEFIALCMREVPVVPLNQPIHDVAMQKAVSGYEFWFHREPDYRQFAKG
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]