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The map label for this gene is yciR [C]

Identifier: 146343289

GI number: 146343289

Start: 6759159

End: 6761117

Strand: Direct

Name: yciR [C]

Synonym: BRADO6510

Alternate gene names: 146343289

Gene position: 6759159-6761117 (Clockwise)

Preceding gene: 146343288

Following gene: 146343290

Centisome position: 90.65

GC content: 69.01

Gene sequence:

>1959_bases
ATGCAGACCGCTCCCACCGACCCCCAGGCGGCGGCGCTCGCCAAAGCCCAGGCGGCGAGCTCGCTGCAGAACATCGCCCT
GACCCTGTTCGCGAACGTCGCCATCGCGACCTCGCTGGCGCTGCTCATCTATCTGCGCGAGGGCAGCACGCCGATCCTGT
GGTGGCTGGCCGGCGCCGCGAGCTTCGCCACGCTGCGGGCCGCATGGGTCTCGCACCTCAAATCCTCCGGCAAGATCGAG
CGGGATCCGCAGCGCGTGCTGCGTGCCCTGACGATCATGGCGCTGGCCAGCGGACTGCTGTGGTCGGTCGTTCCGCTGGG
CCTGCCGGTCTTCACGCACGCCCACAACGTCAACGACATCGTCTTCATCATGGCCGGCGCCACCACCGGCGCCATCATCC
AGAGCCTCGCTTATTCGCCGATGGCGATCGCCTTCGGCGCGCCGCTGATGGGCGCCACGATCCTGCGGATGCTGCTCTCC
GGCGGCGACGTCGGTTGTATCGTTGCCGCCGACATCGCGTTCCTCACCGTGATGCTGTTCCGCGCGGCACGGCTCGGCGA
GCGCAACTTCATCGCCGGCCAGAGCACGACCATGGCGGCCACCGAGCTTGCAGACTCCCTGGCCGAAGCCAACCAGACGC
TCGAGCGGCTGGTGCGAACGGATTCGCTGACCGGACTCGCCAACCGGAGCCACTTTCGCGCGATTGCCGGCGCAGCCTGC
GCCGCCGGACAGGGCGTCGCGTTCCTGCTGTTCGACGTCGATCATTTCAAGACCATCAACGACACCCGCGGCCACGACGC
CGGCGACCGCGTGCTGCAGACAGTGGCGGCGCTGCTGCGCGGAGCCTGCGGCGACGACGAGCTTCCGGTCCGGCTCGGCG
GCGACGAGTTCATCGTGGTGCTGCAAGGCGCCGACGTCGCCGGCCGCGCTGTTGCGCTGGGCGAGCGGCTGATGAGCGCG
CTGCTGCGGCCGGTGCTGATCGCGGGCCAGCCGCTGATCGTCAGCTGTTCGATCGGCGTCGCGGCGCAGCAGGACGGCGC
CATCGACCTCGAGGAACTGTCCGCCCGGGCCGATGCCGCACTGTATCGCGCCAAGGACGACGGCCGCGCCTGCCTGCGGG
TGTTCGACGCCAGGATGCAGTGCGCGCTCACCCTGCAGCGCCGCCTCGATGCCGAGCTGCCGGCGGCCCTGGCCCGCCGC
GAGCTCCACGTCGAGTTTCAGCCGCAGGTCGCGATGGCGACCCAGGACGTCATCGGCTTCGAGGCGCTGCTGCGCTGGAA
GCATCCGAGCGCCGGCATGATCCCGCCGCCGGATATCGTCTCCGCCGCGATCCGGCTGCGCCTCGCAGGCCAGCTCACCG
AGTTCGTCGGAGAGCGCGCATGCGCCTTCCTGCGCGCGCTCGACCGCAAGAAGGCCAGCGGTGTTCGCGTCTCGATCAAC
GTCTCGCCGCGCGAATTTCCGATCCACTCGCCGGCGCAGACGCTGAAGCTCGTCACCGAGCGCTACGGCGTCGATCCCAA
GCGGATCGAGATCGAGGTCACCGAGGAGGCGATGTTCGATCCCAAGCGGTGTGCCGACGAGCTCAAGCTGATCGACGAGC
ACGGCTTCGCGCTGGCGATCGACGATTTCGGCGTCGGTCATTCCTCGATCGCCAACCTGATGGCGGTCGAGATCGACACC
GTCAAGATCGACCGCTCCTTCATCGACGGCATTGCCGGCAACCGCAGGGATCAACAGCTCGTCGCCGCCATCACCGCCGT
GGCGCTGCCGCTCGGCCATCGCATCATCGCAGAGGGCGTCGAGCGCGAGGTCGACGCCGAGTGCCTGCGCATGCTCGGCT
GCTCCTACGCCCAGGGCTGGCTGTACGGCAAGCCGATGAAGGAAGACGACGCGATCGCCTGGCTGGTCCAGCATCGCAAC
GTGACGGCGACCACCACGCCGCTGTCGCTCAGCGCCTAG

Upstream 100 bases:

>100_bases
CGCCTTTAGGCCGGTGCGCGGCAAGGTTGCTGACCGAGTGACGGGCAGCCGATGACCGGCGCGTTCGATGACCGATCAAG
CAGGGCTGTTTCATCCGCGC

Downstream 100 bases:

>100_bases
TCCACGCTTGCTGCACGCGATCCGGTCAGGGCATGCGAAGAGGTCTCGCGACATACTCTGTCCGAGCTGTGCTGACCATG
TCCCTCTCGGCATGAGAGGG

Product: diguanylate cyclase domain/phosphodiesterase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 652; Mature: 652

Protein sequence:

>652_residues
MQTAPTDPQAAALAKAQAASSLQNIALTLFANVAIATSLALLIYLREGSTPILWWLAGAASFATLRAAWVSHLKSSGKIE
RDPQRVLRALTIMALASGLLWSVVPLGLPVFTHAHNVNDIVFIMAGATTGAIIQSLAYSPMAIAFGAPLMGATILRMLLS
GGDVGCIVAADIAFLTVMLFRAARLGERNFIAGQSTTMAATELADSLAEANQTLERLVRTDSLTGLANRSHFRAIAGAAC
AAGQGVAFLLFDVDHFKTINDTRGHDAGDRVLQTVAALLRGACGDDELPVRLGGDEFIVVLQGADVAGRAVALGERLMSA
LLRPVLIAGQPLIVSCSIGVAAQQDGAIDLEELSARADAALYRAKDDGRACLRVFDARMQCALTLQRRLDAELPAALARR
ELHVEFQPQVAMATQDVIGFEALLRWKHPSAGMIPPPDIVSAAIRLRLAGQLTEFVGERACAFLRALDRKKASGVRVSIN
VSPREFPIHSPAQTLKLVTERYGVDPKRIEIEVTEEAMFDPKRCADELKLIDEHGFALAIDDFGVGHSSIANLMAVEIDT
VKIDRSFIDGIAGNRRDQQLVAAITAVALPLGHRIIAEGVEREVDAECLRMLGCSYAQGWLYGKPMKEDDAIAWLVQHRN
VTATTTPLSLSA

Sequences:

>Translated_652_residues
MQTAPTDPQAAALAKAQAASSLQNIALTLFANVAIATSLALLIYLREGSTPILWWLAGAASFATLRAAWVSHLKSSGKIE
RDPQRVLRALTIMALASGLLWSVVPLGLPVFTHAHNVNDIVFIMAGATTGAIIQSLAYSPMAIAFGAPLMGATILRMLLS
GGDVGCIVAADIAFLTVMLFRAARLGERNFIAGQSTTMAATELADSLAEANQTLERLVRTDSLTGLANRSHFRAIAGAAC
AAGQGVAFLLFDVDHFKTINDTRGHDAGDRVLQTVAALLRGACGDDELPVRLGGDEFIVVLQGADVAGRAVALGERLMSA
LLRPVLIAGQPLIVSCSIGVAAQQDGAIDLEELSARADAALYRAKDDGRACLRVFDARMQCALTLQRRLDAELPAALARR
ELHVEFQPQVAMATQDVIGFEALLRWKHPSAGMIPPPDIVSAAIRLRLAGQLTEFVGERACAFLRALDRKKASGVRVSIN
VSPREFPIHSPAQTLKLVTERYGVDPKRIEIEVTEEAMFDPKRCADELKLIDEHGFALAIDDFGVGHSSIANLMAVEIDT
VKIDRSFIDGIAGNRRDQQLVAAITAVALPLGHRIIAEGVEREVDAECLRMLGCSYAQGWLYGKPMKEDDAIAWLVQHRN
VTATTTPLSLSA
>Mature_652_residues
MQTAPTDPQAAALAKAQAASSLQNIALTLFANVAIATSLALLIYLREGSTPILWWLAGAASFATLRAAWVSHLKSSGKIE
RDPQRVLRALTIMALASGLLWSVVPLGLPVFTHAHNVNDIVFIMAGATTGAIIQSLAYSPMAIAFGAPLMGATILRMLLS
GGDVGCIVAADIAFLTVMLFRAARLGERNFIAGQSTTMAATELADSLAEANQTLERLVRTDSLTGLANRSHFRAIAGAAC
AAGQGVAFLLFDVDHFKTINDTRGHDAGDRVLQTVAALLRGACGDDELPVRLGGDEFIVVLQGADVAGRAVALGERLMSA
LLRPVLIAGQPLIVSCSIGVAAQQDGAIDLEELSARADAALYRAKDDGRACLRVFDARMQCALTLQRRLDAELPAALARR
ELHVEFQPQVAMATQDVIGFEALLRWKHPSAGMIPPPDIVSAAIRLRLAGQLTEFVGERACAFLRALDRKKASGVRVSIN
VSPREFPIHSPAQTLKLVTERYGVDPKRIEIEVTEEAMFDPKRCADELKLIDEHGFALAIDDFGVGHSSIANLMAVEIDT
VKIDRSFIDGIAGNRRDQQLVAAITAVALPLGHRIIAEGVEREVDAECLRMLGCSYAQGWLYGKPMKEDDAIAWLVQHRN
VTATTTPLSLSA

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=427, Percent_Identity=32.3185011709602, Blast_Score=194, Evalue=1e-50,
Organism=Escherichia coli, GI87081921, Length=449, Percent_Identity=25.8351893095768, Blast_Score=178, Evalue=1e-45,
Organism=Escherichia coli, GI1790496, Length=260, Percent_Identity=31.9230769230769, Blast_Score=141, Evalue=1e-34,
Organism=Escherichia coli, GI226510982, Length=449, Percent_Identity=26.9487750556793, Blast_Score=135, Evalue=1e-32,
Organism=Escherichia coli, GI87081743, Length=263, Percent_Identity=30.7984790874525, Blast_Score=130, Evalue=3e-31,
Organism=Escherichia coli, GI1788502, Length=268, Percent_Identity=29.4776119402985, Blast_Score=125, Evalue=6e-30,
Organism=Escherichia coli, GI1788849, Length=263, Percent_Identity=33.0798479087452, Blast_Score=106, Evalue=6e-24,
Organism=Escherichia coli, GI87081980, Length=247, Percent_Identity=32.3886639676113, Blast_Score=103, Evalue=4e-23,
Organism=Escherichia coli, GI87081845, Length=293, Percent_Identity=27.3037542662116, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1787262, Length=169, Percent_Identity=36.094674556213, Blast_Score=99, Evalue=8e-22,
Organism=Escherichia coli, GI1786507, Length=247, Percent_Identity=27.5303643724696, Blast_Score=97, Evalue=4e-21,
Organism=Escherichia coli, GI87082096, Length=424, Percent_Identity=25, Blast_Score=94, Evalue=4e-20,
Organism=Escherichia coli, GI87081881, Length=162, Percent_Identity=38.2716049382716, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI1787055, Length=235, Percent_Identity=29.3617021276596, Blast_Score=89, Evalue=6e-19,
Organism=Escherichia coli, GI145693134, Length=165, Percent_Identity=36.969696969697, Blast_Score=87, Evalue=4e-18,
Organism=Escherichia coli, GI87082007, Length=162, Percent_Identity=38.2716049382716, Blast_Score=87, Evalue=5e-18,
Organism=Escherichia coli, GI1787802, Length=155, Percent_Identity=32.258064516129, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1786584, Length=264, Percent_Identity=28.7878787878788, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1788381, Length=441, Percent_Identity=24.7165532879819, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1787056, Length=128, Percent_Identity=39.84375, Blast_Score=76, Evalue=6e-15,
Organism=Escherichia coli, GI1788956, Length=163, Percent_Identity=36.8098159509202, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI87081977, Length=171, Percent_Identity=31.5789473684211, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 69749; Mature: 69749

Theoretical pI: Translated: 6.33; Mature: 6.33

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTAPTDPQAAALAKAQAASSLQNIALTLFANVAIATSLALLIYLREGSTPILWWLAGAA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEEHHHH
SFATLRAAWVSHLKSSGKIERDPQRVLRALTIMALASGLLWSVVPLGLPVFTHAHNVNDI
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCE
VFIMAGATTGAIIQSLAYSPMAIAFGAPLMGATILRMLLSGGDVGCIVAADIAFLTVMLF
EEEEECCCHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHH
RAARLGERNFIAGQSTTMAATELADSLAEANQTLERLVRTDSLTGLANRSHFRAIAGAAC
HHHHCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
AAGQGVAFLLFDVDHFKTINDTRGHDAGDRVLQTVAALLRGACGDDELPVRLGGDEFIVV
HCCCCCEEEEEEHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCEEEEE
LQGADVAGRAVALGERLMSALLRPVLIAGQPLIVSCSIGVAAQQDGAIDLEELSARADAA
EECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEECCCCCCCHHHHHHHHHHH
LYRAKDDGRACLRVFDARMQCALTLQRRLDAELPAALARRELHVEFQPQVAMATQDVIGF
HEECCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHEEEEECCCHHHHHHHHHHH
EALLRWKHPSAGMIPPPDIVSAAIRLRLAGQLTEFVGERACAFLRALDRKKASGVRVSIN
HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
VSPREFPIHSPAQTLKLVTERYGVDPKRIEIEVTEEAMFDPKRCADELKLIDEHGFALAI
ECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECHHHHCCHHHHHHHHHHHHCCCCEEEE
DDFGVGHSSIANLMAVEIDTVKIDRSFIDGIAGNRRDQQLVAAITAVALPLGHRIIAEGV
ECCCCCHHHHHHHHEEEEEEEEECHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHH
EREVDAECLRMLGCSYAQGWLYGKPMKEDDAIAWLVQHRNVTATTTPLSLSA
HHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCEEEEEECCCCEEECCCCCCCC
>Mature Secondary Structure
MQTAPTDPQAAALAKAQAASSLQNIALTLFANVAIATSLALLIYLREGSTPILWWLAGAA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCEEEEEHHHH
SFATLRAAWVSHLKSSGKIERDPQRVLRALTIMALASGLLWSVVPLGLPVFTHAHNVNDI
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCE
VFIMAGATTGAIIQSLAYSPMAIAFGAPLMGATILRMLLSGGDVGCIVAADIAFLTVMLF
EEEEECCCHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHH
RAARLGERNFIAGQSTTMAATELADSLAEANQTLERLVRTDSLTGLANRSHFRAIAGAAC
HHHHCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
AAGQGVAFLLFDVDHFKTINDTRGHDAGDRVLQTVAALLRGACGDDELPVRLGGDEFIVV
HCCCCCEEEEEEHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCEEEEE
LQGADVAGRAVALGERLMSALLRPVLIAGQPLIVSCSIGVAAQQDGAIDLEELSARADAA
EECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEECCCCCCCHHHHHHHHHHH
LYRAKDDGRACLRVFDARMQCALTLQRRLDAELPAALARRELHVEFQPQVAMATQDVIGF
HEECCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHEEEEECCCHHHHHHHHHHH
EALLRWKHPSAGMIPPPDIVSAAIRLRLAGQLTEFVGERACAFLRALDRKKASGVRVSIN
HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE
VSPREFPIHSPAQTLKLVTERYGVDPKRIEIEVTEEAMFDPKRCADELKLIDEHGFALAI
ECCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECHHHHCCHHHHHHHHHHHHCCCCEEEE
DDFGVGHSSIANLMAVEIDTVKIDRSFIDGIAGNRRDQQLVAAITAVALPLGHRIIAEGV
ECCCCCHHHHHHHHEEEEEEEEECHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHHHH
EREVDAECLRMLGCSYAQGWLYGKPMKEDDAIAWLVQHRNVTATTTPLSLSA
HHHHHHHHHHHHCCCHHCCCCCCCCCCCCCCEEEEEECCCCEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]