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The map label for this gene is flbD [H]

Identifier: 146342558

GI number: 146342558

Start: 5921580

End: 5921849

Strand: Direct

Name: flbD [H]

Synonym: BRADO5721

Alternate gene names: 146342558

Gene position: 5921580-5921849 (Clockwise)

Preceding gene: 146342556

Following gene: 146342559

Centisome position: 79.41

GC content: 66.3

Gene sequence:

>270_bases
ATGTCGCAAGAGTTGTCAGCCGATGCCGCAAGTCCGTCACTGGTCCCCCTCATTGTGCCACCGCCGCCGTCCGCGGCGGA
GGTTCTGCCGCTGCTGATCGGCACGCCACTGTCCGAAATCGAGCGCGAGCTCATCGTTCAGACACTGGCCCGCTGCAACG
GCAATCGCACCCACGCCGCACGGCTGCTCGGAATGCCCGTGCGCACCTTGCGGAACAAGATCCGCAGCTACACGGCCGAC
GGCATCGCGGTGCCGGCCTATTCGGCCTGA

Upstream 100 bases:

>100_bases
ACCTTGTCGGACCACGGTCGTTTACGGGCTGGATGTTTAGTTGGTCTCGATGTTTTCGCGCCGTCCTTGCTGGCGGTGCG
GGCGTTGATCGGGAGGAGTT

Downstream 100 bases:

>100_bases
TCCAACGGCGACCGCGCGATATCCCATCGTGTGGAACTCATCAGGATGCGGCGCCGATTGATGTTGATCAGTCGGCTCCG
CAGCCCTCGTGCAATTGCTG

Product: putative transcriptional regulator (helix-turn-helix, Fis-type)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 89; Mature: 88

Protein sequence:

>89_residues
MSQELSADAASPSLVPLIVPPPPSAAEVLPLLIGTPLSEIERELIVQTLARCNGNRTHAARLLGMPVRTLRNKIRSYTAD
GIAVPAYSA

Sequences:

>Translated_89_residues
MSQELSADAASPSLVPLIVPPPPSAAEVLPLLIGTPLSEIERELIVQTLARCNGNRTHAARLLGMPVRTLRNKIRSYTAD
GIAVPAYSA
>Mature_88_residues
SQELSADAASPSLVPLIVPPPPSAAEVLPLLIGTPLSEIERELIVQTLARCNGNRTHAARLLGMPVRTLRNKIRSYTADG
IAVPAYSA

Specific function: Activation of sigma-54-dependent flagellar gene promoters and strong negative autoregulatory effects on its own promoter. The synthesis and function of flbD in C.crescentus is controlled by an internal cell-cycle clock [H]

COG id: COG2204

COG function: function code T; Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR011006
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR002197
- InterPro:   IPR002078
- InterPro:   IPR001789 [H]

Pfam domain/function: PF02954 HTH_8; PF00072 Response_reg; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 9429; Mature: 9298

Theoretical pI: Translated: 8.51; Mature: 8.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQELSADAASPSLVPLIVPPPPSAAEVLPLLIGTPLSEIERELIVQTLARCNGNRTHAA
CCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHH
RLLGMPVRTLRNKIRSYTADGIAVPAYSA
HHHCCCHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
SQELSADAASPSLVPLIVPPPPSAAEVLPLLIGTPLSEIERELIVQTLARCNGNRTHAA
CCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHH
RLLGMPVRTLRNKIRSYTADGIAVPAYSA
HHHCCCHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2315326; 11259647 [H]