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The map label for this gene is ydhC [H]

Identifier: 146341825

GI number: 146341825

Start: 5145479

End: 5146210

Strand: Direct

Name: ydhC [H]

Synonym: BRADO4954

Alternate gene names: 146341825

Gene position: 5145479-5146210 (Clockwise)

Preceding gene: 146341821

Following gene: 146341826

Centisome position: 69.01

GC content: 62.7

Gene sequence:

>732_bases
GTGTCGACAGAGAAAACGAACAAGGCATTGCCCATCATGGCCGAGGCTGACATCGCGATCGCTCGCATCGCCCCGGAGAC
GAGCTTCAAGAATAAGGCCTATGAGGCCTTGAAAGAAGCCATTCTGAAGATGGACATCTACGCCTCGCCCGAGCCTGTCA
TGCTCGACGAGCGCGCTCTTTCCGAACGCCTCGGTGTCAGCCGCACGCCGATCCGCGAAGCCATCGCGATGCTCGAGCAG
GACGGCTTCGTGAAGACCGTGCCGCGCCGTGGCATCGTCGTGGTGCGGCGGACCAAGAGCGAGATCGTCGACATGATCCG
CGCCTGGGCGGCGCTGGAGAGCATGGCCGCGCGCCTCATCACCACGATCGCGCGCAAGAAGGACATCACGGCGCTGCGCG
ACTACTTCAAGGATTTCGGCAAGGACCGCCCGCCGCAGGAGCACATCGAGGAATATTCCAAGGCGAACATCGCGTTTCAT
CAGGCGCTGATCTCGCTGTCGGAGTCGCCGGTGCTGGTCGACATGACCAACGACATTCTGCTCCATGTGCGCGGCTATCG
CCAGCTCACGATCGGCCGCACCGACCGTATCGCGGCGTCCCTGCCCGAGCACCTCGCGATCATCGAGGCGCTGGAGGAAC
GCAACACTGAGCTCGCCGAAAAGCGCGCCCGTGATCATACGCTGGGCCTCGCGACCTATGTCGAGACGCACGGCCAGGAA
CTATTCAGCTAG

Upstream 100 bases:

>100_bases
CGGAAAAATCGCTCACCTTGACAGTCTGGCATCTGGCATGCCAAAAATATTGGACGCAAAATGCTGTACACAGTGATCTC
CCAAGGAGAGGAGATCGGTC

Downstream 100 bases:

>100_bases
CTATTCAGCTAACTTCAAACAGAAGACGCGGAATGCGCCTTCATAGACGACCAGGGAGAGGCGCATGCCGCAGACAGCCA
TGAAGACCGAGGTGGAAACC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 242

Protein sequence:

>243_residues
MSTEKTNKALPIMAEADIAIARIAPETSFKNKAYEALKEAILKMDIYASPEPVMLDERALSERLGVSRTPIREAIAMLEQ
DGFVKTVPRRGIVVVRRTKSEIVDMIRAWAALESMAARLITTIARKKDITALRDYFKDFGKDRPPQEHIEEYSKANIAFH
QALISLSESPVLVDMTNDILLHVRGYRQLTIGRTDRIAASLPEHLAIIEALEERNTELAEKRARDHTLGLATYVETHGQE
LFS

Sequences:

>Translated_243_residues
MSTEKTNKALPIMAEADIAIARIAPETSFKNKAYEALKEAILKMDIYASPEPVMLDERALSERLGVSRTPIREAIAMLEQ
DGFVKTVPRRGIVVVRRTKSEIVDMIRAWAALESMAARLITTIARKKDITALRDYFKDFGKDRPPQEHIEEYSKANIAFH
QALISLSESPVLVDMTNDILLHVRGYRQLTIGRTDRIAASLPEHLAIIEALEERNTELAEKRARDHTLGLATYVETHGQE
LFS
>Mature_242_residues
STEKTNKALPIMAEADIAIARIAPETSFKNKAYEALKEAILKMDIYASPEPVMLDERALSERLGVSRTPIREAIAMLEQD
GFVKTVPRRGIVVVRRTKSEIVDMIRAWAALESMAARLITTIARKKDITALRDYFKDFGKDRPPQEHIEEYSKANIAFHQ
ALISLSESPVLVDMTNDILLHVRGYRQLTIGRTDRIAASLPEHLAIIEALEERNTELAEKRARDHTLGLATYVETHGQEL
FS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27411; Mature: 27280

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTEKTNKALPIMAEADIAIARIAPETSFKNKAYEALKEAILKMDIYASPEPVMLDERAL
CCCCCCCCCCCEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHH
SERLGVSRTPIREAIAMLEQDGFVKTVPRRGIVVVRRTKSEIVDMIRAWAALESMAARLI
HHHHCCCCCCHHHHHHHHHCCCCEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHH
TTIARKKDITALRDYFKDFGKDRPPQEHIEEYSKANIAFHQALISLSESPVLVDMTNDIL
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEE
LHVRGYRQLTIGRTDRIAASLPEHLAIIEALEERNTELAEKRARDHTLGLATYVETHGQE
EEECCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
LFS
HCC
>Mature Secondary Structure 
STEKTNKALPIMAEADIAIARIAPETSFKNKAYEALKEAILKMDIYASPEPVMLDERAL
CCCCCCCCCCEEECCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHH
SERLGVSRTPIREAIAMLEQDGFVKTVPRRGIVVVRRTKSEIVDMIRAWAALESMAARLI
HHHHCCCCCCHHHHHHHHHCCCCEEECCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHH
TTIARKKDITALRDYFKDFGKDRPPQEHIEEYSKANIAFHQALISLSESPVLVDMTNDIL
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCEE
LHVRGYRQLTIGRTDRIAASLPEHLAIIEALEERNTELAEKRARDHTLGLATYVETHGQE
EEECCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
LFS
HCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]