Click here to switch to the map view.

The map label for this gene is ycjO [C]

Identifier: 146341694

GI number: 146341694

Start: 4996450

End: 4997382

Strand: Reverse

Name: ycjO [C]

Synonym: BRADO4799

Alternate gene names: 146341694

Gene position: 4997382-4996450 (Counterclockwise)

Preceding gene: 146341695

Following gene: 146341693

Centisome position: 67.02

GC content: 62.49

Gene sequence:

>933_bases
ATGAGCATGGCCCAACTTGTCGAGACCGAGGCGGCGCCACGCCGCGCCAAGCGCTGGCGCAGACGGCTGCTGCCGTATCT
ATTGAGCCTGCCGGCGCTGCTGGTGTGCATCGCCATCCTGGTGCCGTTCGTGACCGCCGCGGTCTATTCGCTGCAGCGTT
ACCGGCTCAACCTGCCATATCTGCGCGGCTTCATCGGTGTCGACAACTATATCGATTTTCTGTCCGATCCCGCGTTCTGG
AACACGCTGCGCATTTCGCTGGTCTACACTGCCGTGACGGTCATCGCCGAGCTGCTGCTCGGCCTCGGCATTGCGCTCTT
GCTGCGCCGGCCGACGCGCTTCCACAATGCGGTCTCGATCATGCTGCTGCTGCCGCTAATGACGGCTCCAGCGATCGCCG
CGCTGATGTGGAAGCTGATGACCAATCCAAGCTTCGGCATCCTGTCCTACCTCGTCGGCCTGCTCGGCGTGCACGACTTC
AAATGGGCGTCCGATCCGTCGACCGCGCTGTTCACGGTCGTGCTGGTCGATGTCTGGGTCTATACGCCTTTCATCATGAT
TCTGCTGCTGGCCGGCCTGCGGTCGCTGCCGCGGCAGCCGTTCGAGGCAGCGGCGCTCGACGGCGTGCCGGCGAGCTTCG
TGTTCTTCAGGATCACGCTGCCGATGCTCGCACCCTATATCATCACGGCGTCGCTGTTCCGCCTGCTCGATTCCATCCAG
CAGTTCGATATCGTCTATGCGATGACCCAAGGCGGCCCTGGCGACCGGCTGATGGTGTTCCAGGTCCAGGCCTATCTGGA
GTTCTTCCAGTACACCAATGTCGGTCGCTCGGCGGCGCTGCTGATGATCCTGTGGCTGATCACCAACATCCTGTCGAACA
TCTTCATCAAGAACTGGCTGCGGCTGCGCGCACGTGCCCACGGTCACGCCTGA

Upstream 100 bases:

>100_bases
AGGCTGCGCGGCATCTTCCTGACCGCCCGTCGGTCCGGACGCTCCCCACAAGCGTCCGGACCGGCCCCATCTTCCGTGCG
ATGATGTGATCACGCCTATC

Downstream 100 bases:

>100_bases
GGGAGGCCGCTGATGGATCACTCCAGTCCCGCCGGGCGCATCTTCCGTGGCATCGCGCTTGCGCTCGTGCTCGTGTTCTT
CATGTTCCCGATCGTCTGGA

Product: putative sugar ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 309

Protein sequence:

>310_residues
MSMAQLVETEAAPRRAKRWRRRLLPYLLSLPALLVCIAILVPFVTAAVYSLQRYRLNLPYLRGFIGVDNYIDFLSDPAFW
NTLRISLVYTAVTVIAELLLGLGIALLLRRPTRFHNAVSIMLLLPLMTAPAIAALMWKLMTNPSFGILSYLVGLLGVHDF
KWASDPSTALFTVVLVDVWVYTPFIMILLLAGLRSLPRQPFEAAALDGVPASFVFFRITLPMLAPYIITASLFRLLDSIQ
QFDIVYAMTQGGPGDRLMVFQVQAYLEFFQYTNVGRSAALLMILWLITNILSNIFIKNWLRLRARAHGHA

Sequences:

>Translated_310_residues
MSMAQLVETEAAPRRAKRWRRRLLPYLLSLPALLVCIAILVPFVTAAVYSLQRYRLNLPYLRGFIGVDNYIDFLSDPAFW
NTLRISLVYTAVTVIAELLLGLGIALLLRRPTRFHNAVSIMLLLPLMTAPAIAALMWKLMTNPSFGILSYLVGLLGVHDF
KWASDPSTALFTVVLVDVWVYTPFIMILLLAGLRSLPRQPFEAAALDGVPASFVFFRITLPMLAPYIITASLFRLLDSIQ
QFDIVYAMTQGGPGDRLMVFQVQAYLEFFQYTNVGRSAALLMILWLITNILSNIFIKNWLRLRARAHGHA
>Mature_309_residues
SMAQLVETEAAPRRAKRWRRRLLPYLLSLPALLVCIAILVPFVTAAVYSLQRYRLNLPYLRGFIGVDNYIDFLSDPAFWN
TLRISLVYTAVTVIAELLLGLGIALLLRRPTRFHNAVSIMLLLPLMTAPAIAALMWKLMTNPSFGILSYLVGLLGVHDFK
WASDPSTALFTVVLVDVWVYTPFIMILLLAGLRSLPRQPFEAAALDGVPASFVFFRITLPMLAPYIITASLFRLLDSIQQ
FDIVYAMTQGGPGDRLMVFQVQAYLEFFQYTNVGRSAALLMILWLITNILSNIFIKNWLRLRARAHGHA

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=249, Percent_Identity=31.3253012048193, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI1789861, Length=300, Percent_Identity=31.3333333333333, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1790465, Length=188, Percent_Identity=31.3829787234043, Blast_Score=81, Evalue=7e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34993; Mature: 34862

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMAQLVETEAAPRRAKRWRRRLLPYLLSLPALLVCIAILVPFVTAAVYSLQRYRLNLPY
CCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
LRGFIGVDNYIDFLSDPAFWNTLRISLVYTAVTVIAELLLGLGIALLLRRPTRFHNAVSI
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
MLLLPLMTAPAIAALMWKLMTNPSFGILSYLVGLLGVHDFKWASDPSTALFTVVLVDVWV
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
YTPFIMILLLAGLRSLPRQPFEAAALDGVPASFVFFRITLPMLAPYIITASLFRLLDSIQ
HHHHHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QFDIVYAMTQGGPGDRLMVFQVQAYLEFFQYTNVGRSAALLMILWLITNILSNIFIKNWL
HHHHHEEEECCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RLRARAHGHA
HHHHHHCCCC
>Mature Secondary Structure 
SMAQLVETEAAPRRAKRWRRRLLPYLLSLPALLVCIAILVPFVTAAVYSLQRYRLNLPY
CHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
LRGFIGVDNYIDFLSDPAFWNTLRISLVYTAVTVIAELLLGLGIALLLRRPTRFHNAVSI
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
MLLLPLMTAPAIAALMWKLMTNPSFGILSYLVGLLGVHDFKWASDPSTALFTVVLVDVWV
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
YTPFIMILLLAGLRSLPRQPFEAAALDGVPASFVFFRITLPMLAPYIITASLFRLLDSIQ
HHHHHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QFDIVYAMTQGGPGDRLMVFQVQAYLEFFQYTNVGRSAALLMILWLITNILSNIFIKNWL
HHHHHEEEECCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RLRARAHGHA
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]