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The map label for this gene is xynD [H]

Identifier: 146341472

GI number: 146341472

Start: 4761769

End: 4762584

Strand: Direct

Name: xynD [H]

Synonym: BRADO4564

Alternate gene names: 146341472

Gene position: 4761769-4762584 (Clockwise)

Preceding gene: 146341462

Following gene: 146341473

Centisome position: 63.86

GC content: 69.61

Gene sequence:

>816_bases
TTGGGCGGCGCGATTGCCGCGCTGCTCGTCGCGCACGGCGCAGCCGCGGCGCCGGCCGACTGTCCGCGCGAGGGCACGCT
GGGGACCTCGCGCGTGCTGAGCGTCAACCCGAAGAACTATCCTCGCGTCGGCCTGAAGAGCTTTCCCGATACGCTGCCGC
TGCAGGACGGCGAGGTCGTGCTCACCTTCGACGACGGCCCGTCGCCGCCGATGACCAACAAGGTGCTCGCGGCGCTCGCC
AGGGAATGCGTGCGCGCGACCTTCTTCCTGGTCGGCCAGCCGGCGTCGGGCCGCGCCGAGATAGTGCGGAAGATCGCGGC
CGAAGGCCACACGGTCGGCCATCACACCTACACGCACGCGCATCTGGCGCACATCTCGCCCGAGGCCGCGATCGAGGAGA
TCGATCGCGGCATTGCCGCTGACGAGAAGGCGCTCAACGGCGTCGAGACGACGACGCCGTCCACGCCGTTCTTCCGGTTC
CCCTACTTCGAATCCACGCCGGCGACGCTCGACCTGCTGCAGTCGCGCGGCATCGCCGTGTTCGGCGCCGATCTCTGGGC
CAGCGATTGGAAGGCCATGTCTCCGCAGGGGACGCTGCAGCTCCTGATCCGCAGGCTCACCCAGGCGCGCAAGGGCATGA
TCCTGCTGCACGATCCGCAGCCGCGCACCGTCGCGATGCTGCCTGCGTTCCTGCGCTACCTTAGGGATCACGGCTACCGC
GTCGTTCACGTGGTTCCGGCCAGGCCCGACTCGCCGCCCGAGCAGCACAGCGAGCACCCGGCCGAAGCGACCGCGCCAGC
GCGTGAAGGTGGTTAA

Upstream 100 bases:

>100_bases
TTGGTCTGATGTGTGGTTTCACGCATTACATAATGGTCAACAGCGAGCGCAACGGGAAAAGATGTCTCAGGCGCGACTGA
CATCGCGATGGGTAAACGCA

Downstream 100 bases:

>100_bases
TCCGCCGTTCAGGCCGTCGCTCTACGCTGTTTTCGTCCACTGGCGGTGATTTGCGGCTTGCAATCCGGCAACAGCCGTCC
GCAAACGGGAACATGAACCG

Product: putative polysaccharide deacetylase chitin deacetylase

Products: NA

Alternate protein names: Endo-1,4-beta-xylanase D; XYLD; Xylanase D; Acetylated xylan deacetylase [H]

Number of amino acids: Translated: 271; Mature: 270

Protein sequence:

>271_residues
MGGAIAALLVAHGAAAAPADCPREGTLGTSRVLSVNPKNYPRVGLKSFPDTLPLQDGEVVLTFDDGPSPPMTNKVLAALA
RECVRATFFLVGQPASGRAEIVRKIAAEGHTVGHHTYTHAHLAHISPEAAIEEIDRGIAADEKALNGVETTTPSTPFFRF
PYFESTPATLDLLQSRGIAVFGADLWASDWKAMSPQGTLQLLIRRLTQARKGMILLHDPQPRTVAMLPAFLRYLRDHGYR
VVHVVPARPDSPPEQHSEHPAEATAPAREGG

Sequences:

>Translated_271_residues
MGGAIAALLVAHGAAAAPADCPREGTLGTSRVLSVNPKNYPRVGLKSFPDTLPLQDGEVVLTFDDGPSPPMTNKVLAALA
RECVRATFFLVGQPASGRAEIVRKIAAEGHTVGHHTYTHAHLAHISPEAAIEEIDRGIAADEKALNGVETTTPSTPFFRF
PYFESTPATLDLLQSRGIAVFGADLWASDWKAMSPQGTLQLLIRRLTQARKGMILLHDPQPRTVAMLPAFLRYLRDHGYR
VVHVVPARPDSPPEQHSEHPAEATAPAREGG
>Mature_270_residues
GGAIAALLVAHGAAAAPADCPREGTLGTSRVLSVNPKNYPRVGLKSFPDTLPLQDGEVVLTFDDGPSPPMTNKVLAALAR
ECVRATFFLVGQPASGRAEIVRKIAAEGHTVGHHTYTHAHLAHISPEAAIEEIDRGIAADEKALNGVETTTPSTPFFRFP
YFESTPATLDLLQSRGIAVFGADLWASDWKAMSPQGTLQLLIRRLTQARKGMILLHDPQPRTVAMLPAFLRYLRDHGYRV
VHVVPARPDSPPEQHSEHPAEATAPAREGG

Specific function: Endo-acting xylanase which displays no detectable activity against polysaccharides other than xylan. Hydrolyzes glucosidic bonds with retention of anomeric configuration [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 polysaccharide deacetylase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6323338, Length=170, Percent_Identity=31.1764705882353, Blast_Score=71, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6323339, Length=190, Percent_Identity=29.4736842105263, Blast_Score=70, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008965
- InterPro:   IPR012291
- InterPro:   IPR001919
- InterPro:   IPR008985
- InterPro:   IPR011330
- InterPro:   IPR001137
- InterPro:   IPR013319
- InterPro:   IPR018208
- InterPro:   IPR002509
- InterPro:   IPR006311 [H]

Pfam domain/function: PF00553 CBM_2; PF00457 Glyco_hydro_11; PF01522 Polysacc_deac_1 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 29132; Mature: 29001

Theoretical pI: Translated: 7.17; Mature: 7.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGGAIAALLVAHGAAAAPADCPREGTLGTSRVLSVNPKNYPRVGLKSFPDTLPLQDGEVV
CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHCCCCCCCCCCCEE
LTFDDGPSPPMTNKVLAALARECVRATFFLVGQPASGRAEIVRKIAAEGHTVGHHTYTHA
EEECCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHCCCCCCCCCCCHH
HLAHISPEAAIEEIDRGIAADEKALNGVETTTPSTPFFRFPYFESTPATLDLLQSRGIAV
HHHHCCHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCEEECCCCCCCCHHHHHHHHCCCEE
FGADLWASDWKAMSPQGTLQLLIRRLTQARKGMILLHDPQPRTVAMLPAFLRYLRDHGYR
EECCHHHCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHCCCE
VVHVVPARPDSPPEQHSEHPAEATAPAREGG
EEEEEECCCCCCHHHHCCCCCHHCCCCCCCC
>Mature Secondary Structure 
GGAIAALLVAHGAAAAPADCPREGTLGTSRVLSVNPKNYPRVGLKSFPDTLPLQDGEVV
CHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHCCCCCCCCCCCEE
LTFDDGPSPPMTNKVLAALARECVRATFFLVGQPASGRAEIVRKIAAEGHTVGHHTYTHA
EEECCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHCCCCCCCCCCCHH
HLAHISPEAAIEEIDRGIAADEKALNGVETTTPSTPFFRFPYFESTPATLDLLQSRGIAV
HHHHCCHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCEEECCCCCCCCHHHHHHHHCCCEE
FGADLWASDWKAMSPQGTLQLLIRRLTQARKGMILLHDPQPRTVAMLPAFLRYLRDHGYR
EECCHHHCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHCCCE
VVHVVPARPDSPPEQHSEHPAEATAPAREGG
EEEEEECCCCCCHHHHCCCCCHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8170399 [H]