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The map label for this gene is xynD [H]

Identifier: 146341473

GI number: 146341473

Start: 4762946

End: 4764019

Strand: Direct

Name: xynD [H]

Synonym: BRADO4566

Alternate gene names: 146341473

Gene position: 4762946-4764019 (Clockwise)

Preceding gene: 146341472

Following gene: 146341478

Centisome position: 63.88

GC content: 70.95

Gene sequence:

>1074_bases
TTGGCCGCCGATTGTCCCGGCCATCCCGACGCGCTCGGCACGTCGCGCACGCTGGTGGTCGACCCGCGCGAGCATCCACG
GCTCGGCGCGATGCAGTACAAGGAGACGCTGCCGCTCAAGGACCACGAGGTGGTGATCACCTTCGACGACGGTCCCGTGC
CGAAATACAGCAACCAGGTGCTGCAGATTCTCGCCGACCAGTGCGTCAAGGCGACATTCTTCACGATCGGCCGCCAGGCC
AAGGCGTCTCCCGAAGGCGTGCGCAAGCTCGCCGCTGCCGGCCACACCATCGGCACCCACAGCCAGAACCATCCGCTGAG
CATGAACCGGATGACGCTGGAGCAGGTGCAGCCGGAGGTCGACCAGGGCATCGCCTGGACCAAGGCGGCGCTGACCGACC
CCGCCGCCCTGTCGCCCTTCTTCCGCGTGCCCGGCCTGCTGCGGGGCGACGCGGTGGAGAGCTACGCGGCCTCGCTCGGC
CTGCAGGTGTGGAGCGCGGATTTCCTCGCCGACGACTGGCGCAGCATATCCAGCGCCAAGGTTCACGAGCTCGCGATCAA
GCGGCTGGAAGCGCGCGGCAAGGGCATCCTGTTGCTGCACGACATCCAGGCGCGCACCGTGGCCGCGCTGCCGAAGATCC
TCGCCGATCTCAAGGCCAAGAACTACCGCATCGTGCACGTCGTGGCGGCAACGCCTGATCGTCCGGCAACGCCGACCGAG
CCCGAGGACTGGCTGGTGCATCGGCCGTCCGACGAGACGCCGGTTGCGCATTGGCCGGCGATCACGCCGACCGATCTGGC
CGGCGCCGAGACCCGCGCCCGCGCCACACTGGATGATTTCGGCAAGCTCGATGTGCCCGCGGCTTCGCTGCCGAAGCCGG
CGTGGCCGCGTCCCGCCGTGACGGCGCGGATCGCAACCGCACCGGCCCTGCCCGCGCCCGCGGCCGAGCTGTTCGCCTGG
CCGCCGGTCGCCCCCTTGTCGGCCCACCGGCATCAGGTCGTCCGCGTCGAGGGCCAGGCCGCCGCCAAGCCGCCGGCCCG
CCCGGTGCGCCTCGCCAGCCTGCGCAAGCGCTGA

Upstream 100 bases:

>100_bases
GATGCATGATCGTACGAAGACTTGCGTTGGACGGCGATCATGGACCGCGGTGCTGCTGGGCATGCTCGCCGGCGGAACGG
CTCTCGGATCATCGGTCGCT

Downstream 100 bases:

>100_bases
GGCCGGACACCTCCGCTCGTGACACGAAAAAGGGGCGCCGCTGCGCCCCTTTTTCGACAGATCCTTCGATGCGGCTCCTT
CGATGCGGCCGCGCGCAGCG

Product: putative polysaccharide deacetylase

Products: NA

Alternate protein names: Endo-1,4-beta-xylanase D; XYLD; Xylanase D; Acetylated xylan deacetylase [H]

Number of amino acids: Translated: 357; Mature: 356

Protein sequence:

>357_residues
MAADCPGHPDALGTSRTLVVDPREHPRLGAMQYKETLPLKDHEVVITFDDGPVPKYSNQVLQILADQCVKATFFTIGRQA
KASPEGVRKLAAAGHTIGTHSQNHPLSMNRMTLEQVQPEVDQGIAWTKAALTDPAALSPFFRVPGLLRGDAVESYAASLG
LQVWSADFLADDWRSISSAKVHELAIKRLEARGKGILLLHDIQARTVAALPKILADLKAKNYRIVHVVAATPDRPATPTE
PEDWLVHRPSDETPVAHWPAITPTDLAGAETRARATLDDFGKLDVPAASLPKPAWPRPAVTARIATAPALPAPAAELFAW
PPVAPLSAHRHQVVRVEGQAAAKPPARPVRLASLRKR

Sequences:

>Translated_357_residues
MAADCPGHPDALGTSRTLVVDPREHPRLGAMQYKETLPLKDHEVVITFDDGPVPKYSNQVLQILADQCVKATFFTIGRQA
KASPEGVRKLAAAGHTIGTHSQNHPLSMNRMTLEQVQPEVDQGIAWTKAALTDPAALSPFFRVPGLLRGDAVESYAASLG
LQVWSADFLADDWRSISSAKVHELAIKRLEARGKGILLLHDIQARTVAALPKILADLKAKNYRIVHVVAATPDRPATPTE
PEDWLVHRPSDETPVAHWPAITPTDLAGAETRARATLDDFGKLDVPAASLPKPAWPRPAVTARIATAPALPAPAAELFAW
PPVAPLSAHRHQVVRVEGQAAAKPPARPVRLASLRKR
>Mature_356_residues
AADCPGHPDALGTSRTLVVDPREHPRLGAMQYKETLPLKDHEVVITFDDGPVPKYSNQVLQILADQCVKATFFTIGRQAK
ASPEGVRKLAAAGHTIGTHSQNHPLSMNRMTLEQVQPEVDQGIAWTKAALTDPAALSPFFRVPGLLRGDAVESYAASLGL
QVWSADFLADDWRSISSAKVHELAIKRLEARGKGILLLHDIQARTVAALPKILADLKAKNYRIVHVVAATPDRPATPTEP
EDWLVHRPSDETPVAHWPAITPTDLAGAETRARATLDDFGKLDVPAASLPKPAWPRPAVTARIATAPALPAPAAELFAWP
PVAPLSAHRHQVVRVEGQAAAKPPARPVRLASLRKR

Specific function: Endo-acting xylanase which displays no detectable activity against polysaccharides other than xylan. Hydrolyzes glucosidic bonds with retention of anomeric configuration [H]

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 polysaccharide deacetylase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008965
- InterPro:   IPR012291
- InterPro:   IPR001919
- InterPro:   IPR008985
- InterPro:   IPR011330
- InterPro:   IPR001137
- InterPro:   IPR013319
- InterPro:   IPR018208
- InterPro:   IPR002509
- InterPro:   IPR006311 [H]

Pfam domain/function: PF00553 CBM_2; PF00457 Glyco_hydro_11; PF01522 Polysacc_deac_1 [H]

EC number: =3.2.1.8 [H]

Molecular weight: Translated: 38584; Mature: 38452

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAADCPGHPDALGTSRTLVVDPREHPRLGAMQYKETLPLKDHEVVITFDDGPVPKYSNQV
CCCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHCCCCCCCEEEEEECCCCCCHHHHHH
LQILADQCVKATFFTIGRQAKASPEGVRKLAAAGHTIGTHSQNHPLSMNRMTLEQVQPEV
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCHH
DQGIAWTKAALTDPAALSPFFRVPGLLRGDAVESYAASLGLQVWSADFLADDWRSISSAK
HCCCEEHHHHCCCCHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHELAIKRLEARGKGILLLHDIQARTVAALPKILADLKAKNYRIVHVVAATPDRPATPTE
HHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCC
PEDWLVHRPSDETPVAHWPAITPTDLAGAETRARATLDDFGKLDVPAASLPKPAWPRPAV
CCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCC
TARIATAPALPAPAAELFAWPPVAPLSAHRHQVVRVEGQAAAKPPARPVRLASLRKR
EEEEECCCCCCCCHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCC
>Mature Secondary Structure 
AADCPGHPDALGTSRTLVVDPREHPRLGAMQYKETLPLKDHEVVITFDDGPVPKYSNQV
CCCCCCCCCCCCCCCEEEECCCCCCCCCCHHHHHCCCCCCCEEEEEECCCCCCHHHHHH
LQILADQCVKATFFTIGRQAKASPEGVRKLAAAGHTIGTHSQNHPLSMNRMTLEQVQPEV
HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCHH
DQGIAWTKAALTDPAALSPFFRVPGLLRGDAVESYAASLGLQVWSADFLADDWRSISSAK
HCCCEEHHHHCCCCHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHELAIKRLEARGKGILLLHDIQARTVAALPKILADLKAKNYRIVHVVAATPDRPATPTE
HHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCC
PEDWLVHRPSDETPVAHWPAITPTDLAGAETRARATLDDFGKLDVPAASLPKPAWPRPAV
CCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCC
TARIATAPALPAPAAELFAWPPVAPLSAHRHQVVRVEGQAAAKPPARPVRLASLRKR
EEEEECCCCCCCCHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8170399 [H]