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The map label for this gene is rpoZ [H]

Identifier: 146341382

GI number: 146341382

Start: 4669515

End: 4669907

Strand: Reverse

Name: rpoZ [H]

Synonym: BRADO4469

Alternate gene names: 146341382

Gene position: 4669907-4669515 (Counterclockwise)

Preceding gene: 146341385

Following gene: 146341381

Centisome position: 62.63

GC content: 59.29

Gene sequence:

>393_bases
ATGGCGCGCGTCACTGTGGAAGATTGTATCGATAAAGTCGACAACCGGTTTGACCTGGTCCTCCTGGCCGCGCATCGCGC
GCGTATGATCTCGTCAGGTTCGCAACTTACAATTGACAGAGATAATGACAAGAATCCCGTTGTGGCACTCCGGGAGATTG
CGGATTCGACCATTTCTCCCGAGGATCTGAAGGAAGAACTGGTGCATTCGCTGCAGAAGTTCGTCGAGGTCGACGAGCCC
GAGCCCGACACGGTGCCGCTGATCGGCTCGGCTGGTGCCAGCGTCGATGCTGACGACACCGAGGTCGCCGTCGAGCGGAT
GACCGAGGAAGAGCTGCTCAAGGGTCTCGAAGGTCTCGCTCCGCCGGAGGAGCAGCCGGAAGAGGACGAGTGA

Upstream 100 bases:

>100_bases
AAAGAGACCGGTGGCCAGTTTGGCCTTGCGAAAACCGGTCAGTCTCTATAACTAGCCCAACATAATCAGCATATTAAGCA
CACAAAGGACCGGAGCGACA

Downstream 100 bases:

>100_bases
CGTCCTTCATCACCGCCGGCGCAAGCCTGGATTAACTTGTGAGATTGTGAAGGCCCGGACATCGTCCGGGCCTTTGCATT
TGAACGTCATTTCGTGATTA

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega [H]

Number of amino acids: Translated: 130; Mature: 129

Protein sequence:

>130_residues
MARVTVEDCIDKVDNRFDLVLLAAHRARMISSGSQLTIDRDNDKNPVVALREIADSTISPEDLKEELVHSLQKFVEVDEP
EPDTVPLIGSAGASVDADDTEVAVERMTEEELLKGLEGLAPPEEQPEEDE

Sequences:

>Translated_130_residues
MARVTVEDCIDKVDNRFDLVLLAAHRARMISSGSQLTIDRDNDKNPVVALREIADSTISPEDLKEELVHSLQKFVEVDEP
EPDTVPLIGSAGASVDADDTEVAVERMTEEELLKGLEGLAPPEEQPEEDE
>Mature_129_residues
ARVTVEDCIDKVDNRFDLVLLAAHRARMISSGSQLTIDRDNDKNPVVALREIADSTISPEDLKEELVHSLQKFVEVDEPE
PDTVPLIGSAGASVDADDTEVAVERMTEEELLKGLEGLAPPEEQPEEDE

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits [H]

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family [H]

Homologues:

Organism=Escherichia coli, GI1790081, Length=64, Percent_Identity=50, Blast_Score=62, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293 [H]

Pfam domain/function: PF01192 RNA_pol_Rpb6 [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 14310; Mature: 14179

Theoretical pI: Translated: 3.87; Mature: 3.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVTVEDCIDKVDNRFDLVLLAAHRARMISSGSQLTIDRDNDKNPVVALREIADSTISP
CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCCH
EDLKEELVHSLQKFVEVDEPEPDTVPLIGSAGASVDADDTEVAVERMTEEELLKGLEGLA
HHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
PPEEQPEEDE
CCCCCCCCCC
>Mature Secondary Structure 
ARVTVEDCIDKVDNRFDLVLLAAHRARMISSGSQLTIDRDNDKNPVVALREIADSTISP
CCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCCH
EDLKEELVHSLQKFVEVDEPEPDTVPLIGSAGASVDADDTEVAVERMTEEELLKGLEGLA
HHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
PPEEQPEEDE
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12597275 [H]