| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is relA [H]
Identifier: 146341381
GI number: 146341381
Start: 4667052
End: 4669343
Strand: Reverse
Name: relA [H]
Synonym: BRADO4468
Alternate gene names: 146341381
Gene position: 4669343-4667052 (Counterclockwise)
Preceding gene: 146341382
Following gene: 146341380
Centisome position: 62.62
GC content: 66.62
Gene sequence:
>2292_bases ATGGTGGTTCCGGGCCACACTCCTCAGCAGATGCAGGCGGCGGCCGAATCAGCCGCGGTGGCGCCGCCGGCTGAGCGGCC GCGGCCGCCGAAGCCGCGCTCGCGCATGATGCGGCAGTACGACCTCGTCGAGCGGGTCCGTTCCTACAATCCGGATACGA ACGAGGATCTGCTCAATCGCGCCTATGTGTACGCGATGAAGGCGCACGGCTCGCAGACGCGGGCCTCGGGCGACCCGTAT TTTACCCATCCCCTCGAGGTCGCGGCCATTTTGACCGACCTCAAGCTGGACGACGCCACGATCGTCGCGGCGCTGCTGCA CGACACGATCGAGGATACCGAGGCGACCCGCGCCGAGATCGACCGCTTCTTCGGGCCGGAGATCGGCGCGCTGGTCGAGG GTTTGACCAAGCTGAAGCGGCTCGAGCTGGTGTCGCGGGAGGCCAAGCAGGCCGAGAACCTGCGCAAGCTGTTGCTGGCG ATCGCCGACGATGTCCGCGTGCTGCTCGTCAAGCTCGCCGACCGCCTGCACAACATGCGCACGCTCGACTTCGTGCCGGA GGCCTCGCGCCGCCGCATCGCCGAGGAGACGCTCGACATCTATGCGCCGCTGGCCGGCCGCATGGGCATGCAGGAGATGC GCGAGGAGCTGGAGGATCTCTCCTTCCGCACGCTCGATCCGCAGGCCTATGGCGTCGTGATGCAGCGGCTGGACGCGCTG GCCGACCGCAACCGCAATCTGATCGGCGAGATCGAGAGCCAGCTGGCGCGCAAGTTCCGCGACCATGGGCTGACCGCCCG GGTGTTCGGCCGGCGCAAGCGGCCATTCTCGATCTGGACCAAGATGGAGCGCAAATCCATCGGCTTCGAGCAGCTGTCCG ACATCTTCGGCTTCCGCGTCATCATGCCGGACCTCGAATCCTGCTACCGCGCGCTCGGCATCGTGCACACGACCTGGCCG GTCGTGCCGGGGCGCTTCAAGGATTACATCTCGACGCCGAAGCAGAACGACTATCGCTCCATCCACACCACCGTGATCGG GCCGGGCAAGCAGCGCGTCGAGCTGCAGATCCGCACCGAGGACATGGACCAGATCGCCGAGCTCGGCATCGCCGCGCACG CCTTCTACAAGGACGACATCGGCTCGCCGACCGAGCTCCTGAAGCGCGAATCGAATGCGTTCGCCTGGCTGCGCCACACC ATCGGCATCCTCTCGGAGAGCGCCAATCCGGAGGAGTTCCTCGAGCACACCAAGCTCGAGCTGTTTCACGATCAGGTGTT CTGCTTTACGCCGAAGGGCAAGCTGATCGCGCTGCCGCGCCACGCCAATGTGATCGACTTCGCCTATGCCGTGCATACCG ATGTCGGCAACAGCGCCGTCGGCTGCAAGATCAACGGCAAGTTCGCCGCGCTCTCGTCGGAGCTGCAGAACGGCGACGAG GTCGAGGTGCTCACCTCGGATGCGCAGTCGGCGCCGCCCTCGGCCTGGGAGACGCTCGCCATCACCGGCAAGGCGCGGGC GGCGATCCGGCGCGCCACGCGCACCGCGGTGCGCGATCAATATGCCGGGCTCGGCCGACGCATCGTCGAACGCCTGTTCG AGCGCACCAAGCTCGAATATGCCGACGACAAGCTCAAGGGCGCGCTGCCGCGGCTGGCGCGGGCGTCGATCGAGGACGTG ATGGCGGCGGTCGGGCGCGGCGAGATCAAGGCGTCCGACGTCGCCCGCGCGATGTATCCCGACTACAAGGAAGAGCGCGT CGTGCGCTATGGCGCCAAGAAGACGGCAACGCCGGCTGCAAAAACCGCGGCACCGGCAACCGAGCCGGCGCGCGGCGCAT TCGCGATTCCGATCAGCGGCCTCAACTCCGGCCTGCCGGTGAAGTTCGCGCCCAATGGCGGCGCCGTGCCGGGCGACCGC ATCGTCGGCATCGTCACGCCGGGCGAGGGCATCACGATCTATCCGATCCAGTCGCCGGCGCTGAAGGATTTCGAGGACGA GCCGGAGCGCTGGCTCGACGTGCGCTGGGACGTCGATGAAACCACGCCCCAGCGCTTTCCGGCGCGCATCAAGGTCGAGA ACGTCAACGAGCCCGGCAGCCTCGCGCAGGTGGCGACCGTCATTGCCGAGCACGACGGCAACATCGACAATATCAGCATG AGCCGCCGCTCGCCGGACTTCACCGAGCTGACGATCGATCTCGAAGTCTACGACCTCAAGCATCTCTCGGCGATCATCAA CCAGCTGCGCGCCAAGACGATCGTGGCGAAGGTCGACCGTGTGAATGGCTAA
Upstream 100 bases:
>100_bases CTTTGCATTTGAACGTCATTTCGTGATTACCATAGGTCGCGCTGCGACCGCCTGCCGTCGGGTGGATTCGGTCCCAAAGA TAAAGGTTTAGTCATTTTCC
Downstream 100 bases:
>100_bases TCTGCGGGTTTGGCCGCAGCGTTTCCTCCGGCGATGAGCTAAACCAGCAATTCCGTTTTGAGAGAACACCGCGAGCCTGC CGATGTCCCATCCCCCGAAG
Product: GTP pyrophosphokinase
Products: NA
Alternate protein names: (p)ppGpp synthase; ATP:GTP 3'-pyrophosphotransferase [H]
Number of amino acids: Translated: 763; Mature: 763
Protein sequence:
>763_residues MVVPGHTPQQMQAAAESAAVAPPAERPRPPKPRSRMMRQYDLVERVRSYNPDTNEDLLNRAYVYAMKAHGSQTRASGDPY FTHPLEVAAILTDLKLDDATIVAALLHDTIEDTEATRAEIDRFFGPEIGALVEGLTKLKRLELVSREAKQAENLRKLLLA IADDVRVLLVKLADRLHNMRTLDFVPEASRRRIAEETLDIYAPLAGRMGMQEMREELEDLSFRTLDPQAYGVVMQRLDAL ADRNRNLIGEIESQLARKFRDHGLTARVFGRRKRPFSIWTKMERKSIGFEQLSDIFGFRVIMPDLESCYRALGIVHTTWP VVPGRFKDYISTPKQNDYRSIHTTVIGPGKQRVELQIRTEDMDQIAELGIAAHAFYKDDIGSPTELLKRESNAFAWLRHT IGILSESANPEEFLEHTKLELFHDQVFCFTPKGKLIALPRHANVIDFAYAVHTDVGNSAVGCKINGKFAALSSELQNGDE VEVLTSDAQSAPPSAWETLAITGKARAAIRRATRTAVRDQYAGLGRRIVERLFERTKLEYADDKLKGALPRLARASIEDV MAAVGRGEIKASDVARAMYPDYKEERVVRYGAKKTATPAAKTAAPATEPARGAFAIPISGLNSGLPVKFAPNGGAVPGDR IVGIVTPGEGITIYPIQSPALKDFEDEPERWLDVRWDVDETTPQRFPARIKVENVNEPGSLAQVATVIAEHDGNIDNISM SRRSPDFTELTIDLEVYDLKHLSAIINQLRAKTIVAKVDRVNG
Sequences:
>Translated_763_residues MVVPGHTPQQMQAAAESAAVAPPAERPRPPKPRSRMMRQYDLVERVRSYNPDTNEDLLNRAYVYAMKAHGSQTRASGDPY FTHPLEVAAILTDLKLDDATIVAALLHDTIEDTEATRAEIDRFFGPEIGALVEGLTKLKRLELVSREAKQAENLRKLLLA IADDVRVLLVKLADRLHNMRTLDFVPEASRRRIAEETLDIYAPLAGRMGMQEMREELEDLSFRTLDPQAYGVVMQRLDAL ADRNRNLIGEIESQLARKFRDHGLTARVFGRRKRPFSIWTKMERKSIGFEQLSDIFGFRVIMPDLESCYRALGIVHTTWP VVPGRFKDYISTPKQNDYRSIHTTVIGPGKQRVELQIRTEDMDQIAELGIAAHAFYKDDIGSPTELLKRESNAFAWLRHT IGILSESANPEEFLEHTKLELFHDQVFCFTPKGKLIALPRHANVIDFAYAVHTDVGNSAVGCKINGKFAALSSELQNGDE VEVLTSDAQSAPPSAWETLAITGKARAAIRRATRTAVRDQYAGLGRRIVERLFERTKLEYADDKLKGALPRLARASIEDV MAAVGRGEIKASDVARAMYPDYKEERVVRYGAKKTATPAAKTAAPATEPARGAFAIPISGLNSGLPVKFAPNGGAVPGDR IVGIVTPGEGITIYPIQSPALKDFEDEPERWLDVRWDVDETTPQRFPARIKVENVNEPGSLAQVATVIAEHDGNIDNISM SRRSPDFTELTIDLEVYDLKHLSAIINQLRAKTIVAKVDRVNG >Mature_763_residues MVVPGHTPQQMQAAAESAAVAPPAERPRPPKPRSRMMRQYDLVERVRSYNPDTNEDLLNRAYVYAMKAHGSQTRASGDPY FTHPLEVAAILTDLKLDDATIVAALLHDTIEDTEATRAEIDRFFGPEIGALVEGLTKLKRLELVSREAKQAENLRKLLLA IADDVRVLLVKLADRLHNMRTLDFVPEASRRRIAEETLDIYAPLAGRMGMQEMREELEDLSFRTLDPQAYGVVMQRLDAL ADRNRNLIGEIESQLARKFRDHGLTARVFGRRKRPFSIWTKMERKSIGFEQLSDIFGFRVIMPDLESCYRALGIVHTTWP VVPGRFKDYISTPKQNDYRSIHTTVIGPGKQRVELQIRTEDMDQIAELGIAAHAFYKDDIGSPTELLKRESNAFAWLRHT IGILSESANPEEFLEHTKLELFHDQVFCFTPKGKLIALPRHANVIDFAYAVHTDVGNSAVGCKINGKFAALSSELQNGDE VEVLTSDAQSAPPSAWETLAITGKARAAIRRATRTAVRDQYAGLGRRIVERLFERTKLEYADDKLKGALPRLARASIEDV MAAVGRGEIKASDVARAMYPDYKEERVVRYGAKKTATPAAKTAAPATEPARGAFAIPISGLNSGLPVKFAPNGGAVPGDR IVGIVTPGEGITIYPIQSPALKDFEDEPERWLDVRWDVDETTPQRFPARIKVENVNEPGSLAQVATVIAEHDGNIDNISM SRRSPDFTELTIDLEVYDLKHLSAIINQLRAKTIVAKVDRVNG
Specific function: Functions as a (p)ppGpp synthase. In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. Plays a role in ada
COG id: COG0317
COG function: function code TK; Guanosine polyphosphate pyrophosphohydrolases/synthetases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HD domain [H]
Homologues:
Organism=Homo sapiens, GI38348360, Length=124, Percent_Identity=39.5161290322581, Blast_Score=70, Evalue=9e-12, Organism=Escherichia coli, GI1790082, Length=721, Percent_Identity=38.002773925104, Blast_Score=496, Evalue=1e-141, Organism=Escherichia coli, GI1789147, Length=722, Percent_Identity=30.4709141274238, Blast_Score=348, Evalue=8e-97, Organism=Caenorhabditis elegans, GI25143118, Length=131, Percent_Identity=36.6412213740458, Blast_Score=69, Evalue=9e-12, Organism=Drosophila melanogaster, GI24650996, Length=123, Percent_Identity=37.3983739837398, Blast_Score=75, Evalue=2e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR012675 - InterPro: IPR003607 - InterPro: IPR007685 - InterPro: IPR004811 - InterPro: IPR004095 - InterPro: IPR012676 [H]
Pfam domain/function: PF01842 ACT; PF04607 RelA_SpoT; PF02824 TGS [H]
EC number: =2.7.6.5 [H]
Molecular weight: Translated: 85036; Mature: 85036
Theoretical pI: Translated: 6.98; Mature: 6.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVVPGHTPQQMQAAAESAAVAPPAERPRPPKPRSRMMRQYDLVERVRSYNPDTNEDLLNR CCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHH AYVYAMKAHGSQTRASGDPYFTHPLEVAAILTDLKLDDATIVAALLHDTIEDTEATRAEI HHEEEEECCCCCCCCCCCCCEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH DRFFGPEIGALVEGLTKLKRLELVSREAKQAENLRKLLLAIADDVRVLLVKLADRLHNMR HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCE TLDFVPEASRRRIAEETLDIYAPLAGRMGMQEMREELEDLSFRTLDPQAYGVVMQRLDAL EECCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEECCHHHHHHHHHHHHHH ADRNRNLIGEIESQLARKFRDHGLTARVFGRRKRPFSIWTKMERKSIGFEQLSDIFGFRV HHCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHHEE IMPDLESCYRALGIVHTTWPVVPGRFKDYISTPKQNDYRSIHTTVIGPGKQRVELQIRTE EHHHHHHHHHHHCCHHHCCCCCCCHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEEECC DMDQIAELGIAAHAFYKDDIGSPTELLKRESNAFAWLRHTIGILSESANPEEFLEHTKLE CHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH LFHDQVFCFTPKGKLIALPRHANVIDFAYAVHTDVGNSAVGCKINGKFAALSSELQNGDE HHHCEEEEECCCCCEEEECCCCCHHHHHHHEECCCCCCEEEEEECCCHHHHHHHHCCCCC VEVLTSDAQSAPPSAWETLAITGKARAAIRRATRTAVRDQYAGLGRRIVERLFERTKLEY EEEEECCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ADDKLKGALPRLARASIEDVMAAVGRGEIKASDVARAMYPDYKEERVVRYGAKKTATPAA HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCH KTAAPATEPARGAFAIPISGLNSGLPVKFAPNGGAVPGDRIVGIVTPGEGITIYPIQSPA HCCCCCCCCCCCEEEEEECCCCCCCCEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCC LKDFEDEPERWLDVRWDVDETTPQRFPARIKVENVNEPGSLAQVATVIAEHDGNIDNISM CCCCCCCCHHHEEEEECCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEC SRRSPDFTELTIDLEVYDLKHLSAIINQLRAKTIVAKVDRVNG CCCCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MVVPGHTPQQMQAAAESAAVAPPAERPRPPKPRSRMMRQYDLVERVRSYNPDTNEDLLNR CCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHH AYVYAMKAHGSQTRASGDPYFTHPLEVAAILTDLKLDDATIVAALLHDTIEDTEATRAEI HHEEEEECCCCCCCCCCCCCEECHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH DRFFGPEIGALVEGLTKLKRLELVSREAKQAENLRKLLLAIADDVRVLLVKLADRLHNMR HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCE TLDFVPEASRRRIAEETLDIYAPLAGRMGMQEMREELEDLSFRTLDPQAYGVVMQRLDAL EECCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEECCHHHHHHHHHHHHHH ADRNRNLIGEIESQLARKFRDHGLTARVFGRRKRPFSIWTKMERKSIGFEQLSDIFGFRV HHCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHCCCHHHHHHHHHHEE IMPDLESCYRALGIVHTTWPVVPGRFKDYISTPKQNDYRSIHTTVIGPGKQRVELQIRTE EHHHHHHHHHHHCCHHHCCCCCCCHHHHHHCCCCCCCCCEEEEEEECCCCEEEEEEEECC DMDQIAELGIAAHAFYKDDIGSPTELLKRESNAFAWLRHTIGILSESANPEEFLEHTKLE CHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH LFHDQVFCFTPKGKLIALPRHANVIDFAYAVHTDVGNSAVGCKINGKFAALSSELQNGDE HHHCEEEEECCCCCEEEECCCCCHHHHHHHEECCCCCCEEEEEECCCHHHHHHHHCCCCC VEVLTSDAQSAPPSAWETLAITGKARAAIRRATRTAVRDQYAGLGRRIVERLFERTKLEY EEEEECCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ADDKLKGALPRLARASIEDVMAAVGRGEIKASDVARAMYPDYKEERVVRYGAKKTATPAA HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCH KTAAPATEPARGAFAIPISGLNSGLPVKFAPNGGAVPGDRIVGIVTPGEGITIYPIQSPA HCCCCCCCCCCCEEEEEECCCCCCCCEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCC LKDFEDEPERWLDVRWDVDETTPQRFPARIKVENVNEPGSLAQVATVIAEHDGNIDNISM CCCCCCCCHHHEEEEECCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEC SRRSPDFTELTIDLEVYDLKHLSAIINQLRAKTIVAKVDRVNG CCCCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA