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The map label for this gene is ddpA [H]

Identifier: 146341318

GI number: 146341318

Start: 4600076

End: 4601686

Strand: Reverse

Name: ddpA [H]

Synonym: BRADO4400

Alternate gene names: 146341318

Gene position: 4601686-4600076 (Counterclockwise)

Preceding gene: 146341319

Following gene: 146341317

Centisome position: 61.71

GC content: 62.51

Gene sequence:

>1611_bases
ATGAAGCTTTATCGCAGTCTCGTTGCAGCGGCGTTGCTCACAGCGTCCGCTGTGCTGCCCGGCGCCGTTGCGCATGCGGA
GATCGCCAAGGACACTTTGGTGATCGTGTCTGAGATGGGCCCGAACGGCCTCGACACGATGGTGCCGACAGCGAACGATC
ACAGCCGCATGGTCGTGTGGCAGGCCTATGATCGCCTGGTCAGCCATGGCGAAAAGACGCTGGCGGACGGCACCGTGTCC
TATGATGCGAAGGTCATGACGCCGGAGCTGGCCGAAAGCTGGGAGGCCAGCGAGGACGGCAAGACCTACATCTTCCATCT
GCGCAAGGACGCGACGTTCCACGACGGCACGCCGGTCACCGCCAAGGACGTGAAGTGGTCGTTCGACCGCGCCATCGCCG
CCGGCGGCTTCCCGGCCGTGCAGATGGCGGCGGGATCGCTAGTCAAGCCCGAACAGTTCTCGGTGGTCGACGACTACACC
TTCAAGGCGACATTCGATCAGTTCAACAAGCTGACGATGCCCGACCTCGTGGTGCCGGTGCCGGTCATCGTCAACTCCGA
ATTGGCCAAGAAGCATGCGACGGCGCAGGACCCGTGGGCGTTCGACTGGGTGTCGCGCAATGATTGCGGCGGCGGCGCCT
ACAAGGTGGAATCCTGGTCGCCGGGCCAGCAGACCGTGTTCACGCGGTTCGATGCCTGGAAGTCCGGACCGCTGCCCAAG
CTCAAGCGCGTGGTCTACCGGCAGATCGCCTCCGCCGGCACGCGCCGCGCGCTGCTGGAGAAGGGCGACGTCGACATGTC
CGTCGGCCTGCCGCCGAAGGACTATGCCGAGCTGGCGGAGCAGGGCAAGGTCTCGATCATCGGCGTGCCCGTGCAGAACG
ATCTCGTCTTCGTCGACATGAACGTGAAGATCGCCCCGTTCGACAATCCGAAGGTGCGGGAGGCGATCTCCTATGCGATT
CCCTACAAGGAGATCGTCAGCTCCGCGCTCTACAATCGCGCCAAGCCGATGTTCGGCGGCGATCCGGCCAAGCCGTATCC
CGATGCGACCTGGCCGGTTCCGGTCAAGCACGGCCAGGACCTCGCGAAGGCCAAGCAGCTGCTCACCGAGGCCGGCTTCC
CGAACGGCTTCAAGACCACGCTGTCGATCGACCTCAGCGAAGCCACCGTACGTGAGCCGACCGCCATCCTGATCCAGGAA
GCGCTCAAGACTATCGGTGTCGAGCTGACGATCGAGAAGGTGCCGGGCTCGAACTGGTTCGCACAGATGGCCAGCAAGAC
GATGCCGATGGTCATCGCCGAATTCTACGGCTGGCTCGACTATCCCGACTACTTCTTCTTCTGGACCTTCCACGGCGGCA
ACAACTCGGTGTTCAACACCGCCAATTACGTCAATCCCGACCTCGACAAGGTGATCGACGAGGCGCGCTTCACCCGGGAT
CCTGAGATCTACAAGACCAGCCTGAACAAGATGGTCGACATCGTGATGACCGACCTGCCGCGCATCCCGCTCTACACACG
GTTTGCCGACTACGCGATGCAGAAGAACGTCAAGGGCTTCGAGTACTGGTTCCACACCCACCCGGATTTCCGCAAGCTCT
ACAAAGAGTGA

Upstream 100 bases:

>100_bases
GCGCGCCCGTGGGCCCACCAATGGCCGAAGCTGTTGAGCGAGCTCGGCCTCTGACACTGCCTCCACCCTCCACCTGAACC
CTCCAGAAAGGACGCACGAT

Downstream 100 bases:

>100_bases
CTGCATGCCAGGCGCGCTCACCCGAGCGCGCCTGGCAACAAATCTGGATGCTGCTTGCGAGTGATCGGGAGAACCATGGT
TCAGGACCCCCTCGGAGCCT

Product: putative dipeptide ABC transporter periplasmic binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 536; Mature: 536

Protein sequence:

>536_residues
MKLYRSLVAAALLTASAVLPGAVAHAEIAKDTLVIVSEMGPNGLDTMVPTANDHSRMVVWQAYDRLVSHGEKTLADGTVS
YDAKVMTPELAESWEASEDGKTYIFHLRKDATFHDGTPVTAKDVKWSFDRAIAAGGFPAVQMAAGSLVKPEQFSVVDDYT
FKATFDQFNKLTMPDLVVPVPVIVNSELAKKHATAQDPWAFDWVSRNDCGGGAYKVESWSPGQQTVFTRFDAWKSGPLPK
LKRVVYRQIASAGTRRALLEKGDVDMSVGLPPKDYAELAEQGKVSIIGVPVQNDLVFVDMNVKIAPFDNPKVREAISYAI
PYKEIVSSALYNRAKPMFGGDPAKPYPDATWPVPVKHGQDLAKAKQLLTEAGFPNGFKTTLSIDLSEATVREPTAILIQE
ALKTIGVELTIEKVPGSNWFAQMASKTMPMVIAEFYGWLDYPDYFFFWTFHGGNNSVFNTANYVNPDLDKVIDEARFTRD
PEIYKTSLNKMVDIVMTDLPRIPLYTRFADYAMQKNVKGFEYWFHTHPDFRKLYKE

Sequences:

>Translated_536_residues
MKLYRSLVAAALLTASAVLPGAVAHAEIAKDTLVIVSEMGPNGLDTMVPTANDHSRMVVWQAYDRLVSHGEKTLADGTVS
YDAKVMTPELAESWEASEDGKTYIFHLRKDATFHDGTPVTAKDVKWSFDRAIAAGGFPAVQMAAGSLVKPEQFSVVDDYT
FKATFDQFNKLTMPDLVVPVPVIVNSELAKKHATAQDPWAFDWVSRNDCGGGAYKVESWSPGQQTVFTRFDAWKSGPLPK
LKRVVYRQIASAGTRRALLEKGDVDMSVGLPPKDYAELAEQGKVSIIGVPVQNDLVFVDMNVKIAPFDNPKVREAISYAI
PYKEIVSSALYNRAKPMFGGDPAKPYPDATWPVPVKHGQDLAKAKQLLTEAGFPNGFKTTLSIDLSEATVREPTAILIQE
ALKTIGVELTIEKVPGSNWFAQMASKTMPMVIAEFYGWLDYPDYFFFWTFHGGNNSVFNTANYVNPDLDKVIDEARFTRD
PEIYKTSLNKMVDIVMTDLPRIPLYTRFADYAMQKNVKGFEYWFHTHPDFRKLYKE
>Mature_536_residues
MKLYRSLVAAALLTASAVLPGAVAHAEIAKDTLVIVSEMGPNGLDTMVPTANDHSRMVVWQAYDRLVSHGEKTLADGTVS
YDAKVMTPELAESWEASEDGKTYIFHLRKDATFHDGTPVTAKDVKWSFDRAIAAGGFPAVQMAAGSLVKPEQFSVVDDYT
FKATFDQFNKLTMPDLVVPVPVIVNSELAKKHATAQDPWAFDWVSRNDCGGGAYKVESWSPGQQTVFTRFDAWKSGPLPK
LKRVVYRQIASAGTRRALLEKGDVDMSVGLPPKDYAELAEQGKVSIIGVPVQNDLVFVDMNVKIAPFDNPKVREAISYAI
PYKEIVSSALYNRAKPMFGGDPAKPYPDATWPVPVKHGQDLAKAKQLLTEAGFPNGFKTTLSIDLSEATVREPTAILIQE
ALKTIGVELTIEKVPGSNWFAQMASKTMPMVIAEFYGWLDYPDYFFFWTFHGGNNSVFNTANYVNPDLDKVIDEARFTRD
PEIYKTSLNKMVDIVMTDLPRIPLYTRFADYAMQKNVKGFEYWFHTHPDFRKLYKE

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport [H]

COG id: COG0747

COG function: function code E; ABC-type dipeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787762, Length=506, Percent_Identity=29.0513833992095, Blast_Score=169, Evalue=5e-43,
Organism=Escherichia coli, GI1787052, Length=487, Percent_Identity=28.5420944558522, Blast_Score=149, Evalue=4e-37,
Organism=Escherichia coli, GI1789966, Length=542, Percent_Identity=26.9372693726937, Blast_Score=128, Evalue=1e-30,
Organism=Escherichia coli, GI1787495, Length=526, Percent_Identity=25.8555133079848, Blast_Score=94, Evalue=3e-20,
Organism=Escherichia coli, GI1787551, Length=557, Percent_Identity=24.0574506283662, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1789887, Length=520, Percent_Identity=26.3461538461538, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI87081878, Length=481, Percent_Identity=25.3638253638254, Blast_Score=87, Evalue=4e-18,
Organism=Escherichia coli, GI1789397, Length=474, Percent_Identity=22.1518987341772, Blast_Score=73, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 59746; Mature: 59746

Theoretical pI: Translated: 6.21; Mature: 6.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLYRSLVAAALLTASAVLPGAVAHAEIAKDTLVIVSEMGPNGLDTMVPTANDHSRMVVW
CHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEH
QAYDRLVSHGEKTLADGTVSYDAKVMTPELAESWEASEDGKTYIFHLRKDATFHDGTPVT
HHHHHHHHCCCHHHCCCCEECCCEEECHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCC
AKDVKWSFDRAIAAGGFPAVQMAAGSLVKPEQFSVVDDYTFKATFDQFNKLTMPDLVVPV
HHCCCHHHHHHHHCCCCCHHHHHCCCCCCCCCCEEECCCEEEEHHHHHCCCCCCCHHCCC
PVIVNSELAKKHATAQDPWAFDWVSRNDCGGGAYKVESWSPGQQTVFTRFDAWKSGPLPK
CCEECCHHHHHHCCCCCCCEEECCCCCCCCCCEEEECCCCCCCHHEEEEHHCCCCCCCHH
LKRVVYRQIASAGTRRALLEKGDVDMSVGLPPKDYAELAEQGKVSIIGVPVQNDLVFVDM
HHHHHHHHHHHCCHHHHHHHCCCCCEEECCCCHHHHHHHHCCCEEEEEEECCCCEEEEEE
NVKIAPFDNPKVREAISYAIPYKEIVSSALYNRAKPMFGGDPAKPYPDATWPVPVKHGQD
CEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCH
LAKAKQLLTEAGFPNGFKTTLSIDLSEATVREPTAILIQEALKTIGVELTIEKVPGSNWF
HHHHHHHHHHCCCCCCCEEEEEEEECHHHHCCCHHHHHHHHHHHCCEEEEEEECCCCHHH
AQMASKTMPMVIAEFYGWLDYPDYFFFWTFHGGNNSVFNTANYVNPDLDKVIDEARFTRD
HHHHHCCHHHHHHHHHCCCCCCCEEEEEEEECCCCCEECCCCCCCCCHHHHHHHHHCCCC
PEIYKTSLNKMVDIVMTDLPRIPLYTRFADYAMQKNVKGFEYWFHTHPDFRKLYKE
CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHCC
>Mature Secondary Structure
MKLYRSLVAAALLTASAVLPGAVAHAEIAKDTLVIVSEMGPNGLDTMVPTANDHSRMVVW
CHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEH
QAYDRLVSHGEKTLADGTVSYDAKVMTPELAESWEASEDGKTYIFHLRKDATFHDGTPVT
HHHHHHHHCCCHHHCCCCEECCCEEECHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCC
AKDVKWSFDRAIAAGGFPAVQMAAGSLVKPEQFSVVDDYTFKATFDQFNKLTMPDLVVPV
HHCCCHHHHHHHHCCCCCHHHHHCCCCCCCCCCEEECCCEEEEHHHHHCCCCCCCHHCCC
PVIVNSELAKKHATAQDPWAFDWVSRNDCGGGAYKVESWSPGQQTVFTRFDAWKSGPLPK
CCEECCHHHHHHCCCCCCCEEECCCCCCCCCCEEEECCCCCCCHHEEEEHHCCCCCCCHH
LKRVVYRQIASAGTRRALLEKGDVDMSVGLPPKDYAELAEQGKVSIIGVPVQNDLVFVDM
HHHHHHHHHHHCCHHHHHHHCCCCCEEECCCCHHHHHHHHCCCEEEEEEECCCCEEEEEE
NVKIAPFDNPKVREAISYAIPYKEIVSSALYNRAKPMFGGDPAKPYPDATWPVPVKHGQD
CEEEECCCCHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCH
LAKAKQLLTEAGFPNGFKTTLSIDLSEATVREPTAILIQEALKTIGVELTIEKVPGSNWF
HHHHHHHHHHCCCCCCCEEEEEEEECHHHHCCCHHHHHHHHHHHCCEEEEEEECCCCHHH
AQMASKTMPMVIAEFYGWLDYPDYFFFWTFHGGNNSVFNTANYVNPDLDKVIDEARFTRD
HHHHHCCHHHHHHHHHCCCCCCCEEEEEEEECCCCCEECCCCCCCCCHHHHHHHHHCCCC
PEIYKTSLNKMVDIVMTDLPRIPLYTRFADYAMQKNVKGFEYWFHTHPDFRKLYKE
CHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]