| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is ifcA [H]
Identifier: 146340465
GI number: 146340465
Start: 3687744
End: 3689159
Strand: Reverse
Name: ifcA [H]
Synonym: BRADO3505
Alternate gene names: 146340465
Gene position: 3689159-3687744 (Counterclockwise)
Preceding gene: 146340467
Following gene: 146340464
Centisome position: 49.48
GC content: 64.9
Gene sequence:
>1416_bases ATGACGACCGGCGGCGACATCGCCGATTATTCAAAGGCCTATGACGTCGTCGTGGTCGGCGGTGGCAACGCGGCCTTGTG TGCTGCCATCGCTGCCCGCCGCGCCGGCGCGTCAGTGATCGTTGTCGAGGCCGCCTCGAAATTTTATCGCGGCGGCAACA CGCGCCATACCCGCAACATGCGCTGCGCCCACGACGCCGCCACGGCCACCCTGAGCGGTCCCTACACCGAGGAGGAGTTC TGGGACGACCTGCTGCGCGTCACCGAAGGCCAGACCAACGAGCAGCTCGCGCGCATGATGATCCGGCAGTCCAAGGAGAT GCTCGACTGGATCGTCGACCAGGGCGTGCGCTTTCAGCCCTCGCTGGGCGGCACGCTGAGCCTCGGGCGTACCAACTCGT TCTTTCTCGGCGGCGGGCGCGCGATGCTGAATGCGCTCTATCTGACCGCGGAGCGTCTCGGCATCGACGTGCTCTATGAG GCCGAGGTGGTGGCGCTCGATATCGACAATGTTCGCTTTCGCGCAGCCATCGCAAAACAGCGTGACAGTCGGATCCGCAT TCGCGGCAAAGCGCTGGTGGCCGCAGCCGGCGGCTTCGAATCCAACATCGACAAATTGGTGGAAGGCTGGGGCGAGATCG CGCGCAATTTCCTGATCCGCGGCACGTCCAACAATCGCGGCACGGTGCTGGACATGCTGCTCGGTGCCGGCGTCGACAGC ATCGGCGATCCGACGCAATGCCACGCGGTCGCCATCGACGCCCGAGCGCCAAAATATGATGGCGGCATCATCACCCGGCT CGACTGCGTGGTGTTCGGCATCGTCGTGAACAAGCACGCGCAGCGTTTCTACGACGAGGGCGAGGACGTCTGGCCAAAGC GCTACGCGATCTGGGGCCGGCTGGTCGCCGCGCAGCCCGACCAGATCGCCTACATCATCTTCGATGCGAAATCGACCAAT CTGTTCATGCCCTCGCTCTACCCTGCAATCCAGGCTGACAGCGTCGCCGCGCTTGCGGGCAAGCTCGACCTCGATCCAGA GGCGCTGTCGGCGACGGTCGCAGAGTTCAATGCGGCGGTGCGCGACGGCACCTTCAACCCGGATCTTCTCGACGATTGCC GCACCGAGGGCCTGACCCCGCCAAAGACGCATTGGGCACGGCGCATCGAGGCTGGGCCTTACTACGCCTATCCGGTCAGG CCCGGCATCACCTTCACCTATCTCGGCGTGCGGGTCGATCACGAGGCGAGGATGATGATGAAGAGCGGCGGGCCAGCCGA CAACATGTATGCCGCCGGCGAGATCATGGCCGGCAACGTGCTCGGCCGCGGCTATGCTGCCGGCATCGGCATGACCATCG GCAGCGTGTTCGGACGCATCGCAGGCACGGGAGCAGCACGACATGCAGCGCAGTGA
Upstream 100 bases:
>100_bases CAAAAGGTGCCTTGCATATTTTTGTATACAATAGTATTCGAAATTAGGCCGGCGCGGGGATGTTCCAGGCGCCGCCGTTC CCTCTCGGAGAGATCGCGTC
Downstream 100 bases:
>100_bases GGCATTGACCGAAGCAGATCGCCTGATGACGATCTGCAATTCCTGCCGCTATTGCGAAGGACTCTGCGCCGTGTTTCCGG CGATGGAGATGCGTCGCGCG
Product: tricarballylate dehydrogenase
Products: NA
Alternate protein names: Fe(3+)-induced flavocytochrome C3; Ifc3; Iron(III)-induced flavocytochrome C3 [H]
Number of amino acids: Translated: 471; Mature: 470
Protein sequence:
>471_residues MTTGGDIADYSKAYDVVVVGGGNAALCAAIAARRAGASVIVVEAASKFYRGGNTRHTRNMRCAHDAATATLSGPYTEEEF WDDLLRVTEGQTNEQLARMMIRQSKEMLDWIVDQGVRFQPSLGGTLSLGRTNSFFLGGGRAMLNALYLTAERLGIDVLYE AEVVALDIDNVRFRAAIAKQRDSRIRIRGKALVAAAGGFESNIDKLVEGWGEIARNFLIRGTSNNRGTVLDMLLGAGVDS IGDPTQCHAVAIDARAPKYDGGIITRLDCVVFGIVVNKHAQRFYDEGEDVWPKRYAIWGRLVAAQPDQIAYIIFDAKSTN LFMPSLYPAIQADSVAALAGKLDLDPEALSATVAEFNAAVRDGTFNPDLLDDCRTEGLTPPKTHWARRIEAGPYYAYPVR PGITFTYLGVRVDHEARMMMKSGGPADNMYAAGEIMAGNVLGRGYAAGIGMTIGSVFGRIAGTGAARHAAQ
Sequences:
>Translated_471_residues MTTGGDIADYSKAYDVVVVGGGNAALCAAIAARRAGASVIVVEAASKFYRGGNTRHTRNMRCAHDAATATLSGPYTEEEF WDDLLRVTEGQTNEQLARMMIRQSKEMLDWIVDQGVRFQPSLGGTLSLGRTNSFFLGGGRAMLNALYLTAERLGIDVLYE AEVVALDIDNVRFRAAIAKQRDSRIRIRGKALVAAAGGFESNIDKLVEGWGEIARNFLIRGTSNNRGTVLDMLLGAGVDS IGDPTQCHAVAIDARAPKYDGGIITRLDCVVFGIVVNKHAQRFYDEGEDVWPKRYAIWGRLVAAQPDQIAYIIFDAKSTN LFMPSLYPAIQADSVAALAGKLDLDPEALSATVAEFNAAVRDGTFNPDLLDDCRTEGLTPPKTHWARRIEAGPYYAYPVR PGITFTYLGVRVDHEARMMMKSGGPADNMYAAGEIMAGNVLGRGYAAGIGMTIGSVFGRIAGTGAARHAAQ >Mature_470_residues TTGGDIADYSKAYDVVVVGGGNAALCAAIAARRAGASVIVVEAASKFYRGGNTRHTRNMRCAHDAATATLSGPYTEEEFW DDLLRVTEGQTNEQLARMMIRQSKEMLDWIVDQGVRFQPSLGGTLSLGRTNSFFLGGGRAMLNALYLTAERLGIDVLYEA EVVALDIDNVRFRAAIAKQRDSRIRIRGKALVAAAGGFESNIDKLVEGWGEIARNFLIRGTSNNRGTVLDMLLGAGVDSI GDPTQCHAVAIDARAPKYDGGIITRLDCVVFGIVVNKHAQRFYDEGEDVWPKRYAIWGRLVAAQPDQIAYIIFDAKSTNL FMPSLYPAIQADSVAALAGKLDLDPEALSATVAEFNAAVRDGTFNPDLLDDCRTEGLTPPKTHWARRIEAGPYYAYPVRP GITFTYLGVRVDHEARMMMKSGGPADNMYAAGEIMAGNVLGRGYAAGIGMTIGSVFGRIAGTGAARHAAQ
Specific function: Catalyzes unidirectional fumarate reduction using artificial electron donors such as methyl viologen. The physiological reductant is unknown [H]
COG id: COG1053
COG function: function code C; Succinate dehydrogenase/fumarate reductase, flavoprotein subunit
Gene ontology:
Cell location: Periplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 cytochrome c domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003953 - InterPro: IPR013027 - InterPro: IPR010960 - InterPro: IPR011031 [H]
Pfam domain/function: PF00890 FAD_binding_2 [H]
EC number: =1.3.99.1 [H]
Molecular weight: Translated: 50758; Mature: 50627
Theoretical pI: Translated: 6.63; Mature: 6.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTGGDIADYSKAYDVVVVGGGNAALCAAIAARRAGASVIVVEAASKFYRGGNTRHTRNM CCCCCCCHHCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECHHHHHCCCCCCCCCCC RCAHDAATATLSGPYTEEEFWDDLLRVTEGQTNEQLARMMIRQSKEMLDWIVDQGVRFQP CHHHHHCEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECC SLGGTLSLGRTNSFFLGGGRAMLNALYLTAERLGIDVLYEAEVVALDIDNVRFRAAIAKQ CCCCEEEECCCCCEEEECHHHHHHHHHHHHHHCCEEEEEECEEEEEECCCCEEHHHHHHC RDSRIRIRGKALVAAAGGFESNIDKLVEGWGEIARNFLIRGTSNNRGTVLDMLLGAGVDS CCCEEEEECEEEEEECCCCHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHCCCCC IGDPTQCHAVAIDARAPKYDGGIITRLDCVVFGIVVNKHAQRFYDEGEDVWPKRYAIWGR CCCCCCEEEEEEECCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH LVAAQPDQIAYIIFDAKSTNLFMPSLYPAIQADSVAALAGKLDLDPEALSATVAEFNAAV HEECCCCCEEEEEEECCCCCEECCCCCCHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHH RDGTFNPDLLDDCRTEGLTPPKTHWARRIEAGPYYAYPVRPGITFTYLGVRVDHEARMMM CCCCCCCHHHHHHHHCCCCCCHHHHHHHCCCCCEEEEECCCCCEEEEEEEEECHHHHHHH KSGGPADNMYAAGEIMAGNVLGRGYAAGIGMTIGSVFGRIAGTGAARHAAQ HCCCCCCCCEECCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCC >Mature Secondary Structure TTGGDIADYSKAYDVVVVGGGNAALCAAIAARRAGASVIVVEAASKFYRGGNTRHTRNM CCCCCCHHCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECHHHHHCCCCCCCCCCC RCAHDAATATLSGPYTEEEFWDDLLRVTEGQTNEQLARMMIRQSKEMLDWIVDQGVRFQP CHHHHHCEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEECC SLGGTLSLGRTNSFFLGGGRAMLNALYLTAERLGIDVLYEAEVVALDIDNVRFRAAIAKQ CCCCEEEECCCCCEEEECHHHHHHHHHHHHHHCCEEEEEECEEEEEECCCCEEHHHHHHC RDSRIRIRGKALVAAAGGFESNIDKLVEGWGEIARNFLIRGTSNNRGTVLDMLLGAGVDS CCCEEEEECEEEEEECCCCHHHHHHHHHHHHHHHHHEEEECCCCCCCHHHHHHHHCCCCC IGDPTQCHAVAIDARAPKYDGGIITRLDCVVFGIVVNKHAQRFYDEGEDVWPKRYAIWGR CCCCCCEEEEEEECCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH LVAAQPDQIAYIIFDAKSTNLFMPSLYPAIQADSVAALAGKLDLDPEALSATVAEFNAAV HEECCCCCEEEEEEECCCCCEECCCCCCHHCCCCHHHHHCCCCCCHHHHHHHHHHHHHHH RDGTFNPDLLDDCRTEGLTPPKTHWARRIEAGPYYAYPVRPGITFTYLGVRVDHEARMMM CCCCCCCHHHHHHHHCCCCCCHHHHHHHCCCCCEEEEECCCCCEEEEEEEEECHHHHHHH KSGGPADNMYAAGEIMAGNVLGRGYAAGIGMTIGSVFGRIAGTGAARHAAQ HCCCCCCCCEECCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10455032; 10581549 [H]