| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is livF [H]
Identifier: 146340381
GI number: 146340381
Start: 3602356
End: 3603132
Strand: Direct
Name: livF [H]
Synonym: BRADO3410
Alternate gene names: 146340381
Gene position: 3602356-3603132 (Clockwise)
Preceding gene: 146340380
Following gene: 146340383
Centisome position: 48.31
GC content: 71.04
Gene sequence:
>777_bases ATGAGTGACGTGCTGCTGTCGGTCGAGCATCTCGCGGCGACCTATGACCAGGCGATCCGCGCAATCAGCGACGTGTCGTT CGCGGTCCACACCGGCGAGATCGTCGCGGTGCTCGGCGCCAATGGCGCGGGCAAGTCGACGACCTTGCAGGCGGTCTCGG CGCTGCTGCCGGCGCGGCGCGGCCAGATCACCGGCGGGCGCATCATCTATGACGGACGCGACGTGTCATCGTCGTCGGCC GCGCAGCTGGTGCGCGCCGGCCTCGTGCCGGTGCTCGAGGGCCGGCACTGCTTCGCCTCGCTGAGCGTTGAGGAGAATTT GATCACCGGCGCGATCGGCCGCGATGCGCGGCGCGGCGAGATCACGGCCGATCTCCAGCGCGTCTACGCGCTGTTCCCGC AGCTCACGCGCCACCGCCGCTCCGCTGCGGGACTGACCTCCGGCGGCGAGCAGCAGATGACGGCGATCGGGCGGGCGCTG ATGTCGCGGCCGCGGCTCCTGGTGCTCGACGAGCCGTCGATGGGGCTCGCGCCGCTGGTCGTCGAAAGCATTTTCCGCGC GCTGAAGCGGCTCAATGCGGAGGAGGGGCTGTCGATCCTGGTGGCCGAGCAGAACTCCACCGTCGCGCTGCGCTTCGCCG ACCACGCCATCGTACTCGAAGGCGGCCGCGCCGTGCTCGCGGGTCCCGCGCGCGAGCTCCGGCAGCGTCCGGACATCAAG CATCTCTATCTCGGCGGCGCCACCGCGCCGGCCGAGACCACCCAGGCTGTGGCCTGA
Upstream 100 bases:
>100_bases TCCTGAGAGCGCGCCGGAGGCGTGCATCTCGGAGGACGGCCGCAGGGCAATTCCCGCGGCAAGTCCCGGCGACACTCTAC GCAGTGCAGGAGCTTTCATC
Downstream 100 bases:
>100_bases CTTGATCAGAAGAAGAGGAGACGTTCATGGCGACCAGCACTGCCGCACGCAAGATCGACGATGGCCCATACCCGCAGCTC GATGCCGTCGTGGCTGAGGT
Product: high-affinity branched-chain amino acid ABC transporter ATP-binding protein
Products: ADP; phosphate; L-leucine [Cytoplasm]; ADP; L-valine [Cytoplasm]; L-iso-leucine [Cytoplasm] [C]
Alternate protein names: LIV-I protein F [H]
Number of amino acids: Translated: 258; Mature: 257
Protein sequence:
>258_residues MSDVLLSVEHLAATYDQAIRAISDVSFAVHTGEIVAVLGANGAGKSTTLQAVSALLPARRGQITGGRIIYDGRDVSSSSA AQLVRAGLVPVLEGRHCFASLSVEENLITGAIGRDARRGEITADLQRVYALFPQLTRHRRSAAGLTSGGEQQMTAIGRAL MSRPRLLVLDEPSMGLAPLVVESIFRALKRLNAEEGLSILVAEQNSTVALRFADHAIVLEGGRAVLAGPARELRQRPDIK HLYLGGATAPAETTQAVA
Sequences:
>Translated_258_residues MSDVLLSVEHLAATYDQAIRAISDVSFAVHTGEIVAVLGANGAGKSTTLQAVSALLPARRGQITGGRIIYDGRDVSSSSA AQLVRAGLVPVLEGRHCFASLSVEENLITGAIGRDARRGEITADLQRVYALFPQLTRHRRSAAGLTSGGEQQMTAIGRAL MSRPRLLVLDEPSMGLAPLVVESIFRALKRLNAEEGLSILVAEQNSTVALRFADHAIVLEGGRAVLAGPARELRQRPDIK HLYLGGATAPAETTQAVA >Mature_257_residues SDVLLSVEHLAATYDQAIRAISDVSFAVHTGEIVAVLGANGAGKSTTLQAVSALLPARRGQITGGRIIYDGRDVSSSSAA QLVRAGLVPVLEGRHCFASLSVEENLITGAIGRDARRGEITADLQRVYALFPQLTRHRRSAAGLTSGGEQQMTAIGRALM SRPRLLVLDEPSMGLAPLVVESIFRALKRLNAEEGLSILVAEQNSTVALRFADHAIVLEGGRAVLAGPARELRQRPDIKH LYLGGATAPAETTQAVA
Specific function: Component of the leucine-specific transport system [H]
COG id: COG0410
COG function: function code E; ABC-type branched-chain amino acid transport systems, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI27436953, Length=220, Percent_Identity=27.2727272727273, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI31657092, Length=227, Percent_Identity=27.3127753303965, Blast_Score=79, Evalue=4e-15, Organism=Homo sapiens, GI153792144, Length=218, Percent_Identity=27.9816513761468, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI11967971, Length=223, Percent_Identity=27.8026905829596, Blast_Score=76, Evalue=4e-14, Organism=Homo sapiens, GI105990541, Length=224, Percent_Identity=26.7857142857143, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI27477115, Length=245, Percent_Identity=27.7551020408163, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI27262624, Length=218, Percent_Identity=27.0642201834862, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI27262626, Length=218, Percent_Identity=27.0642201834862, Blast_Score=73, Evalue=2e-13, Organism=Homo sapiens, GI148612844, Length=221, Percent_Identity=28.9592760180996, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI255708477, Length=221, Percent_Identity=28.9592760180996, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI21536376, Length=232, Percent_Identity=22.8448275862069, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI116734710, Length=236, Percent_Identity=25.4237288135593, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI47078218, Length=226, Percent_Identity=25.2212389380531, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI45446740, Length=226, Percent_Identity=25.2212389380531, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI9955963, Length=234, Percent_Identity=30.3418803418803, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI27881501, Length=240, Percent_Identity=26.25, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI30795238, Length=240, Percent_Identity=26.25, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI42490749, Length=246, Percent_Identity=27.2357723577236, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI150417984, Length=224, Percent_Identity=29.9107142857143, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI9961252, Length=239, Percent_Identity=27.6150627615063, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI9961250, Length=239, Percent_Identity=27.6150627615063, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI4505771, Length=239, Percent_Identity=27.6150627615063, Blast_Score=66, Evalue=2e-11, Organism=Homo sapiens, GI9665248, Length=248, Percent_Identity=29.4354838709677, Blast_Score=65, Evalue=6e-11, Organism=Homo sapiens, GI171184400, Length=240, Percent_Identity=29.5833333333333, Blast_Score=65, Evalue=6e-11, Organism=Escherichia coli, GI87082268, Length=246, Percent_Identity=43.4959349593496, Blast_Score=194, Evalue=3e-51, Organism=Escherichia coli, GI1789593, Length=242, Percent_Identity=33.0578512396694, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1790190, Length=229, Percent_Identity=31.8777292576419, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1789864, Length=261, Percent_Identity=25.6704980842912, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1790544, Length=264, Percent_Identity=28.7878787878788, Blast_Score=91, Evalue=5e-20, Organism=Escherichia coli, GI1789991, Length=237, Percent_Identity=28.6919831223629, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1786398, Length=244, Percent_Identity=27.4590163934426, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1788506, Length=245, Percent_Identity=29.7959183673469, Blast_Score=88, Evalue=5e-19, Organism=Escherichia coli, GI87081791, Length=240, Percent_Identity=27.5, Blast_Score=88, Evalue=5e-19, Organism=Escherichia coli, GI1788225, Length=217, Percent_Identity=31.7972350230415, Blast_Score=88, Evalue=7e-19, Organism=Escherichia coli, GI87081834, Length=221, Percent_Identity=30.316742081448, Blast_Score=87, Evalue=7e-19, Organism=Escherichia coli, GI1789672, Length=237, Percent_Identity=25.3164556962025, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1787370, Length=225, Percent_Identity=28, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1787029, Length=219, Percent_Identity=26.9406392694064, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1787712, Length=223, Percent_Identity=28.6995515695067, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1787792, Length=223, Percent_Identity=29.5964125560538, Blast_Score=82, Evalue=2e-17, Organism=Escherichia coli, GI1786319, Length=201, Percent_Identity=30.3482587064677, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1788450, Length=233, Percent_Identity=24.8927038626609, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI48994997, Length=238, Percent_Identity=30.672268907563, Blast_Score=79, Evalue=2e-16, Organism=Escherichia coli, GI1787089, Length=218, Percent_Identity=28.4403669724771, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI87081709, Length=216, Percent_Identity=26.3888888888889, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1789873, Length=231, Percent_Identity=27.7056277056277, Blast_Score=78, Evalue=4e-16, Organism=Escherichia coli, GI1786872, Length=238, Percent_Identity=28.5714285714286, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI48995001, Length=242, Percent_Identity=28.5123966942149, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI1790467, Length=215, Percent_Identity=27.4418604651163, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1788210, Length=225, Percent_Identity=26.2222222222222, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1789032, Length=223, Percent_Identity=26.9058295964126, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1789962, Length=235, Percent_Identity=27.2340425531915, Blast_Score=75, Evalue=3e-15, Organism=Escherichia coli, GI1788472, Length=229, Percent_Identity=27.5109170305677, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI87081782, Length=227, Percent_Identity=28.1938325991189, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1790162, Length=241, Percent_Identity=24.4813278008299, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI1787105, Length=258, Percent_Identity=27.1317829457364, Blast_Score=71, Evalue=6e-14, Organism=Escherichia coli, GI48994943, Length=216, Percent_Identity=25.462962962963, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI87082267, Length=235, Percent_Identity=25.1063829787234, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1788761, Length=226, Percent_Identity=26.9911504424779, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1789586, Length=248, Percent_Identity=26.6129032258064, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI1790525, Length=241, Percent_Identity=27.8008298755187, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1786563, Length=238, Percent_Identity=27.7310924369748, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI1788897, Length=209, Percent_Identity=28.7081339712919, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI145693107, Length=262, Percent_Identity=26.7175572519084, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1789963, Length=251, Percent_Identity=25.0996015936255, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1787500, Length=242, Percent_Identity=25.6198347107438, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1788644, Length=253, Percent_Identity=26.8774703557312, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI1787758, Length=247, Percent_Identity=26.3157894736842, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1786253, Length=237, Percent_Identity=26.1603375527426, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI1786345, Length=229, Percent_Identity=25.3275109170306, Blast_Score=61, Evalue=7e-11, Organism=Caenorhabditis elegans, GI212646699, Length=225, Percent_Identity=33.3333333333333, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI193208177, Length=243, Percent_Identity=30.0411522633745, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI115533608, Length=233, Percent_Identity=26.6094420600858, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI193211015, Length=221, Percent_Identity=30.7692307692308, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI71996809, Length=221, Percent_Identity=30.7692307692308, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI193211017, Length=216, Percent_Identity=31.4814814814815, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI71983516, Length=217, Percent_Identity=25.8064516129032, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI71983510, Length=217, Percent_Identity=25.8064516129032, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI71983523, Length=217, Percent_Identity=25.8064516129032, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17567265, Length=211, Percent_Identity=29.3838862559242, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI193209708, Length=231, Percent_Identity=29.004329004329, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17510237, Length=237, Percent_Identity=24.0506329113924, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI25146777, Length=216, Percent_Identity=28.7037037037037, Blast_Score=65, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17565938, Length=219, Percent_Identity=26.4840182648402, Blast_Score=64, Evalue=6e-11, Organism=Saccharomyces cerevisiae, GI6319856, Length=222, Percent_Identity=23.8738738738739, Blast_Score=66, Evalue=6e-12, Organism=Drosophila melanogaster, GI21357907, Length=222, Percent_Identity=31.981981981982, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI24666092, Length=233, Percent_Identity=24.8927038626609, Blast_Score=71, Evalue=7e-13, Organism=Drosophila melanogaster, GI24650855, Length=234, Percent_Identity=26.9230769230769, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI24650853, Length=234, Percent_Identity=26.9230769230769, Blast_Score=71, Evalue=9e-13, Organism=Drosophila melanogaster, GI28574150, Length=207, Percent_Identity=26.5700483091787, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI116007328, Length=207, Percent_Identity=26.5700483091787, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI281362751, Length=234, Percent_Identity=27.7777777777778, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI28574744, Length=209, Percent_Identity=26.7942583732057, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI85726357, Length=230, Percent_Identity=30, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI24641565, Length=218, Percent_Identity=30.7339449541284, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI17136592, Length=231, Percent_Identity=25.974025974026, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24662800, Length=217, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=3e-11, Organism=Drosophila melanogaster, GI221512771, Length=223, Percent_Identity=25.1121076233184, Blast_Score=65, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 27246; Mature: 27114
Theoretical pI: Translated: 9.12; Mature: 9.12
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDVLLSVEHLAATYDQAIRAISDVSFAVHTGEIVAVLGANGAGKSTTLQAVSALLPARR CCCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHC GQITGGRIIYDGRDVSSSSAAQLVRAGLVPVLEGRHCFASLSVEENLITGAIGRDARRGE CCCCCCEEEECCCCCCCHHHHHHHHHCCCHHCCCCCEEEECCCCCCHHHHCCCCCCCCCC ITADLQRVYALFPQLTRHRRSAAGLTSGGEQQMTAIGRALMSRPRLLVLDEPSMGLAPLV HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHH VESIFRALKRLNAEEGLSILVAEQNSTVALRFADHAIVLEGGRAVLAGPARELRQRPDIK HHHHHHHHHHCCHHCCCEEEEEECCCEEEEEEECEEEEEECCCEEEECCHHHHHHCCCCE HLYLGGATAPAETTQAVA EEEECCCCCCCCHHHCCC >Mature Secondary Structure SDVLLSVEHLAATYDQAIRAISDVSFAVHTGEIVAVLGANGAGKSTTLQAVSALLPARR CCHHHHHHHHHHHHHHHHHHHHHHHEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHHC GQITGGRIIYDGRDVSSSSAAQLVRAGLVPVLEGRHCFASLSVEENLITGAIGRDARRGE CCCCCCEEEECCCCCCCHHHHHHHHHCCCHHCCCCCEEEECCCCCCHHHHCCCCCCCCCC ITADLQRVYALFPQLTRHRRSAAGLTSGGEQQMTAIGRALMSRPRLLVLDEPSMGLAPLV HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHH VESIFRALKRLNAEEGLSILVAEQNSTVALRFADHAIVLEGGRAVLAGPARELRQRPDIK HHHHHHHHHHCCHHCCCEEEEEECCCEEEEEEECEEEEEECCCEEEECCHHHHHHCCCCE HLYLGGATAPAETTQAVA EEEECCCCCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-leucine [Periplasm]; H2O; ATP; L-valine [Periplasm]; L-iso-leucine [Periplasm] [C]
Specific reaction: ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2195019; 8041620; 9278503 [H]