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The map label for this gene is ytbD [H]

Identifier: 146339969

GI number: 146339969

Start: 3176952

End: 3178142

Strand: Direct

Name: ytbD [H]

Synonym: BRADO2974

Alternate gene names: 146339969

Gene position: 3176952-3178142 (Clockwise)

Preceding gene: 146339968

Following gene: 146339970

Centisome position: 42.61

GC content: 68.18

Gene sequence:

>1191_bases
ATGACATCCGCTTCGACCATGCACGCCGAGACCCCGCCGCGCTTCGCGCCGACCGCGCTGATGCTCGGCAACATCATTAC
CGGTTGCTCGGTGCTGGCGCCCGCCGGCCTGCTGCCCGAGCTCGCCGAGGGTCTTTCGGTCGAGGTTCACACCGCCGGCC
TGCTGATCACCTTCGGCGCCGTCGTGCTGTGCATCTGTTCGCCCCTGACGGCTTGGCTGACCGGCCGCTTCGACCGCCGC
CTCCTGCTGGCGTTCACGTTGCTGGTGCTCGCGCTGGGGAACCTCGCCTCGGCATTCGCCCCGAGCTACGCGAGCCTGCT
CGTGATCAGGCTGGTGATGCTGGCGGTTGGCGCCCTGTATACGCCGCAGGCGGCAGGGACAGCGGCGCTGATCAGTCCGG
TCGAGAAGCGCGGCAGCACGATCGCCTATGTGTTTCTCGGCTGGTCGCTGGCCGCCGCCGTCGGACTGCCGCTGATCACT
TTCATCGGCAGTCATTCCGGCTGGCGCGCGGCCTATCTCACGGTCGGCGCCGCCGGTGCGGTCAGCCTGTTGCTGCTGAC
ATGGCGGCTGCCATCCGGCTTGAAGGGTGCGCCGGTCGAGCTGAAGACCTGGAGCGAGCTCGGCCGCAACCGCTTGGTCG
TGCTGCTGCTCCTGATCACGACCCTGCAGATGTCGGGACAGTTCGTCATCTTCACCTTCATGGGCCCGCTGCTGAAGACG
TTGACCGGCGCGGAGCCTAACGCGGTCGGACTTGTGTTCGCGATCTATGGCATCTGCGGCTTCGTCGGCGTCGTGATCGC
CACCCGGATCGTCGACGGCTGGGGGCCGTATCGGACGTCGCTGCTGTTCACCTGCCTGTTGTTCGCCGGGATTGCGCTCT
GGACCGCCAGCGCCGGCGTCTATGCGGCGATGGCGTTGGCGGTCGCGATCTGGGGACTTGGGTTCGCGTCGACCAACTCG
ATGCAGCAGGTCCGCCTGGTCGCGGCGGCGCCGCCGCTCGCATCCGCCTCAGTGTCGCTCAACACCTCGGTGCTCTATAT
CGGGCAGGCGATCGGTTCCGCGGTGGGTGGAAGCCTGTTCGCGCGGGGCGCCCTCGGCGCCACCGGCTATGTCGCCATGG
CGTTTGTGATGCTGGCGCTGCTCGCCATTCTGGCGAGCCGGCCGCGGTCGCCGGTCGCGGCACTCGCCTGA

Upstream 100 bases:

>100_bases
AGCGTCGGCCCAGCCCGTACGCTGACGGGACGAAAGAATATCATGTGCGGCATGAGGAATTTTCATGCAGGTGCATGAAA
ATCCCTGCTATTGAACGGTC

Downstream 100 bases:

>100_bases
GGTCCACTGCAAATCAGCGGCGAGGCGCTTGGCAAAACCGGTCGGACCGGATTAAAGCCGCTGGGGTGGGAGGCTGGAGG
GCGGAGATCGCGCCAATTGC

Product: putative inner membrane transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 395

Protein sequence:

>396_residues
MTSASTMHAETPPRFAPTALMLGNIITGCSVLAPAGLLPELAEGLSVEVHTAGLLITFGAVVLCICSPLTAWLTGRFDRR
LLLAFTLLVLALGNLASAFAPSYASLLVIRLVMLAVGALYTPQAAGTAALISPVEKRGSTIAYVFLGWSLAAAVGLPLIT
FIGSHSGWRAAYLTVGAAGAVSLLLLTWRLPSGLKGAPVELKTWSELGRNRLVVLLLLITTLQMSGQFVIFTFMGPLLKT
LTGAEPNAVGLVFAIYGICGFVGVVIATRIVDGWGPYRTSLLFTCLLFAGIALWTASAGVYAAMALAVAIWGLGFASTNS
MQQVRLVAAAPPLASASVSLNTSVLYIGQAIGSAVGGSLFARGALGATGYVAMAFVMLALLAILASRPRSPVAALA

Sequences:

>Translated_396_residues
MTSASTMHAETPPRFAPTALMLGNIITGCSVLAPAGLLPELAEGLSVEVHTAGLLITFGAVVLCICSPLTAWLTGRFDRR
LLLAFTLLVLALGNLASAFAPSYASLLVIRLVMLAVGALYTPQAAGTAALISPVEKRGSTIAYVFLGWSLAAAVGLPLIT
FIGSHSGWRAAYLTVGAAGAVSLLLLTWRLPSGLKGAPVELKTWSELGRNRLVVLLLLITTLQMSGQFVIFTFMGPLLKT
LTGAEPNAVGLVFAIYGICGFVGVVIATRIVDGWGPYRTSLLFTCLLFAGIALWTASAGVYAAMALAVAIWGLGFASTNS
MQQVRLVAAAPPLASASVSLNTSVLYIGQAIGSAVGGSLFARGALGATGYVAMAFVMLALLAILASRPRSPVAALA
>Mature_395_residues
TSASTMHAETPPRFAPTALMLGNIITGCSVLAPAGLLPELAEGLSVEVHTAGLLITFGAVVLCICSPLTAWLTGRFDRRL
LLAFTLLVLALGNLASAFAPSYASLLVIRLVMLAVGALYTPQAAGTAALISPVEKRGSTIAYVFLGWSLAAAVGLPLITF
IGSHSGWRAAYLTVGAAGAVSLLLLTWRLPSGLKGAPVELKTWSELGRNRLVVLLLLITTLQMSGQFVIFTFMGPLLKTL
TGAEPNAVGLVFAIYGICGFVGVVIATRIVDGWGPYRTSLLFTCLLFAGIALWTASAGVYAAMALAVAIWGLGFASTNSM
QQVRLVAAAPPLASASVSLNTSVLYIGQAIGSAVGGSLFARGALGATGYVAMAFVMLALLAILASRPRSPVAALA

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=329, Percent_Identity=31.6109422492401, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI145693198, Length=357, Percent_Identity=26.6106442577031, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1787808, Length=353, Percent_Identity=22.9461756373938, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1786595, Length=366, Percent_Identity=21.3114754098361, Blast_Score=66, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 40795; Mature: 40664

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSASTMHAETPPRFAPTALMLGNIITGCSVLAPAGLLPELAEGLSVEVHTAGLLITFGA
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCEEEEEHHHHHHHHHH
VVLCICSPLTAWLTGRFDRRLLLAFTLLVLALGNLASAFAPSYASLLVIRLVMLAVGALY
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
TPQAAGTAALISPVEKRGSTIAYVFLGWSLAAAVGLPLITFIGSHSGWRAAYLTVGAAGA
CCCCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECHHHH
VSLLLLTWRLPSGLKGAPVELKTWSELGRNRLVVLLLLITTLQMSGQFVIFTFMGPLLKT
HHHHHHHHCCCCCCCCCCEEEHHHHHCCCHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHH
LTGAEPNAVGLVFAIYGICGFVGVVIATRIVDGWGPYRTSLLFTCLLFAGIALWTASAGV
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCHHH
YAAMALAVAIWGLGFASTNSMQQVRLVAAAPPLASASVSLNTSVLYIGQAIGSAVGGSLF
HHHHHHHHHHHHCCCCCCCCHHHEEHEEECCCCCCCCEECCCHHEEHHHHHHHHHCHHHH
ARGALGATGYVAMAFVMLALLAILASRPRSPVAALA
HCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHCC
>Mature Secondary Structure 
TSASTMHAETPPRFAPTALMLGNIITGCSVLAPAGLLPELAEGLSVEVHTAGLLITFGA
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCEEEEEHHHHHHHHHH
VVLCICSPLTAWLTGRFDRRLLLAFTLLVLALGNLASAFAPSYASLLVIRLVMLAVGALY
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
TPQAAGTAALISPVEKRGSTIAYVFLGWSLAAAVGLPLITFIGSHSGWRAAYLTVGAAGA
CCCCCCHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECHHHH
VSLLLLTWRLPSGLKGAPVELKTWSELGRNRLVVLLLLITTLQMSGQFVIFTFMGPLLKT
HHHHHHHHCCCCCCCCCCEEEHHHHHCCCHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHH
LTGAEPNAVGLVFAIYGICGFVGVVIATRIVDGWGPYRTSLLFTCLLFAGIALWTASAGV
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCHHH
YAAMALAVAIWGLGFASTNSMQQVRLVAAAPPLASASVSLNTSVLYIGQAIGSAVGGSLF
HHHHHHHHHHHHCCCCCCCCHHHEEHEEECCCCCCCCEECCCHHEEHHHHHHHHHCHHHH
ARGALGATGYVAMAFVMLALLAILASRPRSPVAALA
HCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]