| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is atoS [C]
Identifier: 146339844
GI number: 146339844
Start: 3046765
End: 3049533
Strand: Reverse
Name: atoS [C]
Synonym: BRADO2845
Alternate gene names: 146339844
Gene position: 3049533-3046765 (Counterclockwise)
Preceding gene: 146339846
Following gene: 146339843
Centisome position: 40.9
GC content: 65.69
Gene sequence:
>2769_bases ATGCGAAGCATCGAAGATACTCGCGAAGTTCTTCTATCAACTTCATCTGCAACCCGGCGAGACCAGCTCGCAGCGCTTGC TGCGTTGGCGGCCTCGGCTTTGCTGTTTGCCATCATCGCTCCCTCCGCCAAAATTCAGCTGCCGGCGAGGCCCGCATTCA TCGCGAGCTATCAGTCGGCGCTGGCGCTGAATGATCTGATCACGGCGTTCCTGCTGTTCTCCCAGTTCGTGTTGCTGCGC TCCCGCGCCCTGGCGTGGCTCGCGTCCGGCTACTTGTTCACCGGTCCAGCCGCGCTGTTGCACACGCTCGTGTTCCCTGG CGTGTACGCGCCGGACGGGCTGTTCGGGGCCGGACCGCAGGGCGCTGTCTGGATCTACATGATCTGGCATGGCGGCTTTC CGCTGTTCGTCCTCGCCTACGTACTCGGCAGAAACGGCCGCCCTGTGAGTTCAGTTGGTGCGGCGCTGGCGTTCGCCATC ATCGGCGTTGCGGTCTCGCTGGCTGCGCTGGCCTGGATCGTGATCACTCAGGAGGCGGCGCTACCGGCTCTTCTCGACGG CAATGCCGCAACGCCGGCGTTGAAGGTGGTGGTCGGCGCGATCTGGTGCGCGACATTCGCCGCGCTCGTCGCGATGGCGT GGCGGCGGCCGCACAGCGTCCTCGACCTCTGGATCATGGTGGTGCTGTGCGCGTGGCTGTTCGATCTGTCGCTGTCATCG CTGCTCAATGCCGCAAGGTTCGATCTTGGCTACTACGCCGGTCGCATCTACGGCCTGTTCGCGGCGAGCTTCGTGCTCGG GGTGCTGCTCGCCGACAATGTCGGACTGCAGCAACGCCTGACGCGCCTGCTGCAACAGCAGCGGCGGCAGAGCGAAACCG AGCGGGCCCGCTTCATCGCGCGCGAGCGGTTGTTCAGCGCCGTCGTGGAATCCTCCAATGACGCCATCATCACGCTGACC TTGCACGGCAAGATCACATCCTGGAACCGGGCCGCGGAGCAACTGTTCGGATATGGCGCCGAGGACGCGCTGGGCAGCGA CATCGCCCTGATCGTTCCGCCCGACCGGCGCGGCGAGGTCGACGGCATTCTCGCCAGGATTGGACAGGGCGAGAAGATCG AGCATCACGAGACGGTACGTCGGCACAGGGATGGTCGCGAGGTCGAAGTCTCCCTCAGCGTCTCACCGATCCTTGATGCA AGGGGAACCGTGATCGGCGCATCCAAGGTCGCGCGCGACATCACGGAGAGCAAGCGCACGCGCAACGCGCTGACCCGGGA AACCGAAGAGCGGCGACGCATCTTCGAGACCTCGCAGGATCTGATCCTGATCGCGGATTCGCGCGGCAATCTGATCCAGG TCAGCCCGAGCACGCGAGCCATCCTGGGCTACCGCCCGGAGGAGATGGTCGGCCGCAACGCCAGCGACTTCGTCTATCCG CCTGAGCTGGAGGCCGTCCGCAGCCAAATGCGCGACTGCCGCCGCGGCCGCGATATCCACAATTTCGAGGCCCAGCTGCT GCACAAGGAAGGCCGCGGCGTGGTGCTGAACTGGATGGCCAGCTGGTCGGATCCGATGCGGCGCCATTTCTTTGTCGGAC GCGATCTCACCGAGAAGCGCGCCGCCGAGGCTCAGTTCCGCCAGGCGCAGAAGATGGAGGCCGTCGGCCAGCTCACCGGC GGCATCGCCCACGACTTCAACAATATCCTCACGGTGATCACGGGAAGCATCGCCATCCTGGCAGACGCCGTCGCGGACCG GCCGGAGCTCGCGGCGATCGCCAAGCTGATCGACGACTCGGCTGACCGCGGCGCGCATCTGACGCGACAGCTGCTGGCCT TCGCCCGCAAGCAGCCGCTACAGCCGGTCGATCTCGACGTCAATGCGCTCATCATCGAGACCGCGGCCCTGCTGCGGCCC ACGCTGGGTGAGCATATCGAGATCGAGCGTATCCTGTGCGTCGATCCATGTACGGCCCTGGCCGATCCGAACCAGCTCGC GACCTCCGTGGTCAATCTCGCGCTCAATGCGCGAGACGCGATGCCGCAAGGCGGCAAGCTGACTTTGGAAACCGCGAATG TCACGCTCGACCAGGATTATGCCAACGCCAACGCCGAGGTCGCGGTCGGCGACTACGTCATGATCGCCGTCAGCGACACC GGCAGCGGCATTCCGCCGGCCTATCTCGACAAGGTGTTCGACCCGTTCTTCTCGACCAAGGGCCTCGGCAAGGGGACGGG GCTCGGGCTGAGCATGGTGTTCGGCTTCGTGAAACAGTCCGGCGGCCACATCAAGGTCTATAGCGAGGTCGGCCACGGCA CCTCGATCAAGCTCTATCTGCCACGCTCGACCTCGGCGCCGACGGCCGGCGCCGACCGGCGTTTGCCCGACGCAACGGGC GGCGACGAGACCATCCTGATCGTCGAGGACGATCCGCTGGTGCGCCAGCACGCGGTCACCCAGGTCAAGAGCCTCGGCTA CACGACGCTTGCCGCCGCCAATGCTGCGGAGGCACTGGCCGTGCTGGAGCAACATCCGGAGATCGACCTGCTGTTCACCG ACGTCATCATGCCCGGCGGCATGAACGGTCGGCAGCTCGCCGACGCCGCGCGGGCGCAGCGTCCGGCGCTGAAGACGCTG TTCACCTCCGGCTACACCGAGAACGCGATCGTGCATCACGGCCGCCTCGATGCGGGCGTGCTGCTGCTGCCCAAGCCCTA CCGCAAGCCCGAGCTCGCCCGCATGATCCGCATCGCCCTGGAGGGATGA
Upstream 100 bases:
>100_bases GGCACCATGCAACCTTTGTTTGAATAAGTGATTTATTCGCGCATCAGTCGCGTCAGTGCAGAGTTGAGCACGTCGATGCC AAGTGCGCAGGACTTTGGAG
Downstream 100 bases:
>100_bases CGTAGCCCGGATGAGCGCAGCGATATCCGGGTTCACCGCAAAGCTCGTGAGAACCCGGATGTCGCTGCGCTCATCCGGGC TACGGTGACGCGCCGTGCTG
Product: sensor histidine kinase
Products: NA
Alternate protein names: Blue-light-activated histidine kinase; Response regulator [H]
Number of amino acids: Translated: 922; Mature: 922
Protein sequence:
>922_residues MRSIEDTREVLLSTSSATRRDQLAALAALAASALLFAIIAPSAKIQLPARPAFIASYQSALALNDLITAFLLFSQFVLLR SRALAWLASGYLFTGPAALLHTLVFPGVYAPDGLFGAGPQGAVWIYMIWHGGFPLFVLAYVLGRNGRPVSSVGAALAFAI IGVAVSLAALAWIVITQEAALPALLDGNAATPALKVVVGAIWCATFAALVAMAWRRPHSVLDLWIMVVLCAWLFDLSLSS LLNAARFDLGYYAGRIYGLFAASFVLGVLLADNVGLQQRLTRLLQQQRRQSETERARFIARERLFSAVVESSNDAIITLT LHGKITSWNRAAEQLFGYGAEDALGSDIALIVPPDRRGEVDGILARIGQGEKIEHHETVRRHRDGREVEVSLSVSPILDA RGTVIGASKVARDITESKRTRNALTRETEERRRIFETSQDLILIADSRGNLIQVSPSTRAILGYRPEEMVGRNASDFVYP PELEAVRSQMRDCRRGRDIHNFEAQLLHKEGRGVVLNWMASWSDPMRRHFFVGRDLTEKRAAEAQFRQAQKMEAVGQLTG GIAHDFNNILTVITGSIAILADAVADRPELAAIAKLIDDSADRGAHLTRQLLAFARKQPLQPVDLDVNALIIETAALLRP TLGEHIEIERILCVDPCTALADPNQLATSVVNLALNARDAMPQGGKLTLETANVTLDQDYANANAEVAVGDYVMIAVSDT GSGIPPAYLDKVFDPFFSTKGLGKGTGLGLSMVFGFVKQSGGHIKVYSEVGHGTSIKLYLPRSTSAPTAGADRRLPDATG GDETILIVEDDPLVRQHAVTQVKSLGYTTLAAANAAEALAVLEQHPEIDLLFTDVIMPGGMNGRQLADAARAQRPALKTL FTSGYTENAIVHHGRLDAGVLLLPKPYRKPELARMIRIALEG
Sequences:
>Translated_922_residues MRSIEDTREVLLSTSSATRRDQLAALAALAASALLFAIIAPSAKIQLPARPAFIASYQSALALNDLITAFLLFSQFVLLR SRALAWLASGYLFTGPAALLHTLVFPGVYAPDGLFGAGPQGAVWIYMIWHGGFPLFVLAYVLGRNGRPVSSVGAALAFAI IGVAVSLAALAWIVITQEAALPALLDGNAATPALKVVVGAIWCATFAALVAMAWRRPHSVLDLWIMVVLCAWLFDLSLSS LLNAARFDLGYYAGRIYGLFAASFVLGVLLADNVGLQQRLTRLLQQQRRQSETERARFIARERLFSAVVESSNDAIITLT LHGKITSWNRAAEQLFGYGAEDALGSDIALIVPPDRRGEVDGILARIGQGEKIEHHETVRRHRDGREVEVSLSVSPILDA RGTVIGASKVARDITESKRTRNALTRETEERRRIFETSQDLILIADSRGNLIQVSPSTRAILGYRPEEMVGRNASDFVYP PELEAVRSQMRDCRRGRDIHNFEAQLLHKEGRGVVLNWMASWSDPMRRHFFVGRDLTEKRAAEAQFRQAQKMEAVGQLTG GIAHDFNNILTVITGSIAILADAVADRPELAAIAKLIDDSADRGAHLTRQLLAFARKQPLQPVDLDVNALIIETAALLRP TLGEHIEIERILCVDPCTALADPNQLATSVVNLALNARDAMPQGGKLTLETANVTLDQDYANANAEVAVGDYVMIAVSDT GSGIPPAYLDKVFDPFFSTKGLGKGTGLGLSMVFGFVKQSGGHIKVYSEVGHGTSIKLYLPRSTSAPTAGADRRLPDATG GDETILIVEDDPLVRQHAVTQVKSLGYTTLAAANAAEALAVLEQHPEIDLLFTDVIMPGGMNGRQLADAARAQRPALKTL FTSGYTENAIVHHGRLDAGVLLLPKPYRKPELARMIRIALEG >Mature_922_residues MRSIEDTREVLLSTSSATRRDQLAALAALAASALLFAIIAPSAKIQLPARPAFIASYQSALALNDLITAFLLFSQFVLLR SRALAWLASGYLFTGPAALLHTLVFPGVYAPDGLFGAGPQGAVWIYMIWHGGFPLFVLAYVLGRNGRPVSSVGAALAFAI IGVAVSLAALAWIVITQEAALPALLDGNAATPALKVVVGAIWCATFAALVAMAWRRPHSVLDLWIMVVLCAWLFDLSLSS LLNAARFDLGYYAGRIYGLFAASFVLGVLLADNVGLQQRLTRLLQQQRRQSETERARFIARERLFSAVVESSNDAIITLT LHGKITSWNRAAEQLFGYGAEDALGSDIALIVPPDRRGEVDGILARIGQGEKIEHHETVRRHRDGREVEVSLSVSPILDA RGTVIGASKVARDITESKRTRNALTRETEERRRIFETSQDLILIADSRGNLIQVSPSTRAILGYRPEEMVGRNASDFVYP PELEAVRSQMRDCRRGRDIHNFEAQLLHKEGRGVVLNWMASWSDPMRRHFFVGRDLTEKRAAEAQFRQAQKMEAVGQLTG GIAHDFNNILTVITGSIAILADAVADRPELAAIAKLIDDSADRGAHLTRQLLAFARKQPLQPVDLDVNALIIETAALLRP TLGEHIEIERILCVDPCTALADPNQLATSVVNLALNARDAMPQGGKLTLETANVTLDQDYANANAEVAVGDYVMIAVSDT GSGIPPAYLDKVFDPFFSTKGLGKGTGLGLSMVFGFVKQSGGHIKVYSEVGHGTSIKLYLPRSTSAPTAGADRRLPDATG GDETILIVEDDPLVRQHAVTQVKSLGYTTLAAANAAEALAVLEQHPEIDLLFTDVIMPGGMNGRQLADAARAQRPALKTL FTSGYTENAIVHHGRLDAGVLLLPKPYRKPELARMIRIALEG
Specific function: Photosensitive kinase and response regulator that is involved in increased bacterial virulence upon exposure to light [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1788549, Length=368, Percent_Identity=27.7173913043478, Blast_Score=112, Evalue=1e-25, Organism=Escherichia coli, GI1790436, Length=254, Percent_Identity=30.7086614173228, Blast_Score=110, Evalue=3e-25, Organism=Escherichia coli, GI1790300, Length=251, Percent_Identity=31.4741035856574, Blast_Score=84, Evalue=3e-17, Organism=Escherichia coli, GI87081816, Length=265, Percent_Identity=26.0377358490566, Blast_Score=82, Evalue=1e-16, Organism=Escherichia coli, GI48994928, Length=531, Percent_Identity=25.0470809792844, Blast_Score=75, Evalue=2e-14, Organism=Escherichia coli, GI87082128, Length=239, Percent_Identity=26.7782426778243, Blast_Score=70, Evalue=9e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR011006 - InterPro: IPR001610 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 - InterPro: IPR001789 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS; PF00072 Response_reg [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 99855; Mature: 99855
Theoretical pI: Translated: 7.19; Mature: 7.19
Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRSIEDTREVLLSTSSATRRDQLAALAALAASALLFAIIAPSAKIQLPARPAFIASYQSA CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHH LALNDLITAFLLFSQFVLLRSRALAWLASGYLFTGPAALLHTLVFPGVYAPDGLFGAGPQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHCCCCCCCCCCCCCCCC GAVWIYMIWHGGFPLFVLAYVLGRNGRPVSSVGAALAFAIIGVAVSLAALAWIVITQEAA CCEEEEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC LPALLDGNAATPALKVVVGAIWCATFAALVAMAWRRPHSVLDLWIMVVLCAWLFDLSLSS CCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH LLNAARFDLGYYAGRIYGLFAASFVLGVLLADNVGLQQRLTRLLQQQRRQSETERARFIA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH RERLFSAVVESSNDAIITLTLHGKITSWNRAAEQLFGYGAEDALGSDIALIVPPDRRGEV HHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCHHCCCCEEEEECCCCCCCH DGILARIGQGEKIEHHETVRRHRDGREVEVSLSVSPILDARGTVIGASKVARDITESKRT HHHHHHCCCCCCCHHHHHHHHCCCCCEEEEEEEECCCCCCCCCEEEHHHHHHHHHHHHHH RNALTRETEERRRIFETSQDLILIADSRGNLIQVSPSTRAILGYRPEEMVGRNASDFVYP HHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEECCCCCEEECCCCHHHHCCCCCCCCCC PELEAVRSQMRDCRRGRDIHNFEAQLLHKEGRGVVLNWMASWSDPMRRHFFVGRDLTEKR CCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEHHHCCCHHHHHEECCCCHHHHH AAEAQFRQAQKMEAVGQLTGGIAHDFNNILTVITGSIAILADAVADRPELAAIAKLIDDS HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC ADRGAHLTRQLLAFARKQPLQPVDLDVNALIIETAALLRPTLGEHIEIERILCVDPCTAL CCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEEECCHHHC ADPNQLATSVVNLALNARDAMPQGGKLTLETANVTLDQDYANANAEVAVGDYVMIAVSDT CCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCEEEECCCCCCCCEEEECCEEEEEEECC GSGIPPAYLDKVFDPFFSTKGLGKGTGLGLSMVFGFVKQSGGHIKVYSEVGHGTSIKLYL CCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEE PRSTSAPTAGADRRLPDATGGDETILIVEDDPLVRQHAVTQVKSLGYTTLAAANAAEALA CCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH VLEQHPEIDLLFTDVIMPGGMNGRQLADAARAQRPALKTLFTSGYTENAIVHHGRLDAGV HHHCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCHHHHHHHHCCCCCCCEEECCCCCCCE LLLPKPYRKPELARMIRIALEG EECCCCCCCHHHHHHHHHHCCC >Mature Secondary Structure MRSIEDTREVLLSTSSATRRDQLAALAALAASALLFAIIAPSAKIQLPARPAFIASYQSA CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHH LALNDLITAFLLFSQFVLLRSRALAWLASGYLFTGPAALLHTLVFPGVYAPDGLFGAGPQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECHHHHHHHHHCCCCCCCCCCCCCCCC GAVWIYMIWHGGFPLFVLAYVLGRNGRPVSSVGAALAFAIIGVAVSLAALAWIVITQEAA CCEEEEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC LPALLDGNAATPALKVVVGAIWCATFAALVAMAWRRPHSVLDLWIMVVLCAWLFDLSLSS CCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH LLNAARFDLGYYAGRIYGLFAASFVLGVLLADNVGLQQRLTRLLQQQRRQSETERARFIA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH RERLFSAVVESSNDAIITLTLHGKITSWNRAAEQLFGYGAEDALGSDIALIVPPDRRGEV HHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHCCCCCHHCCCCEEEEECCCCCCCH DGILARIGQGEKIEHHETVRRHRDGREVEVSLSVSPILDARGTVIGASKVARDITESKRT HHHHHHCCCCCCCHHHHHHHHCCCCCEEEEEEEECCCCCCCCCEEEHHHHHHHHHHHHHH RNALTRETEERRRIFETSQDLILIADSRGNLIQVSPSTRAILGYRPEEMVGRNASDFVYP HHHHHHHHHHHHHHHCCCCCEEEEECCCCCEEEECCCCCEEECCCCHHHHCCCCCCCCCC PELEAVRSQMRDCRRGRDIHNFEAQLLHKEGRGVVLNWMASWSDPMRRHFFVGRDLTEKR CCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEEHHHCCCHHHHHEECCCCHHHHH AAEAQFRQAQKMEAVGQLTGGIAHDFNNILTVITGSIAILADAVADRPELAAIAKLIDDS HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC ADRGAHLTRQLLAFARKQPLQPVDLDVNALIIETAALLRPTLGEHIEIERILCVDPCTAL CCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEEEEECCHHHC ADPNQLATSVVNLALNARDAMPQGGKLTLETANVTLDQDYANANAEVAVGDYVMIAVSDT CCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCEEEECCCCCCCCEEEECCEEEEEEECC GSGIPPAYLDKVFDPFFSTKGLGKGTGLGLSMVFGFVKQSGGHIKVYSEVGHGTSIKLYL CCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCEEEEEE PRSTSAPTAGADRRLPDATGGDETILIVEDDPLVRQHAVTQVKSLGYTTLAAANAAEALA CCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH VLEQHPEIDLLFTDVIMPGGMNGRQLADAARAQRPALKTLFTSGYTENAIVHHGRLDAGV HHHCCCCEEEEEEEEECCCCCCCHHHHHHHHHCCHHHHHHHHCCCCCCCEEECCCCCCCE LLLPKPYRKPELARMIRIALEG EECCCCCCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA