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The map label for this gene is ygdK [C]

Identifier: 146339708

GI number: 146339708

Start: 2904524

End: 2904949

Strand: Reverse

Name: ygdK [C]

Synonym: BRADO2706

Alternate gene names: 146339708

Gene position: 2904949-2904524 (Counterclockwise)

Preceding gene: 146339709

Following gene: 146339705

Centisome position: 38.96

GC content: 66.43

Gene sequence:

>426_bases
ATGACCATCGACGAGATCCGCGACAATTTCGCCCTGCTGGACGATTGGGACGACCGCTACCGATACGTGATCGAGCTCGG
CCGCACCTTGGCGCCGATGCCGGAGGACGAGCACTCCGCTGCCAACAAGGTGCAGGGCTGTGCGAGCCAGGTCTGGCTGT
CCAAGCACATGGATGACAGCCGCGCCGTGCCGGTGCTGAACTATCTCGGCGACAGCGATGCCCACATCGTGCGCGGCCTG
ATCGCGATCCTGCTGACTTTGTATTCGGGGCGCACACCGCAGGAGATCCTGACCATCGACGCGCCCGCCGTGTTCGACGA
GCTCGGGTTCCGCGAGCACCTGACGCCGCAGCGCTCCAACGGCCTGCGCTCGATGGTCGAGCGCATCCGCAGCGACGCAC
GCGAGGCGCTTGCCGCGGCCTCGTGA

Upstream 100 bases:

>100_bases
ATGGCAGCTGCCGCCGACGCCCTGATCGTCGGCGGAACCGGCTGTCGCTTTCGTCCCGCCGAACCCCTATATGAGGTTCA
GGACGGGACTGAAGAGCACC

Downstream 100 bases:

>100_bases
TGTCGGCTACTTCTCGCGCTCGGGTCGCTGCTGTCCCAAGCCCATCTTCTTGGCGAGTTGCGAGCGCGTGACGGCGTAGT
TCGGCGCCACCATCGGATAA

Product: putative sufE-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 140

Protein sequence:

>141_residues
MTIDEIRDNFALLDDWDDRYRYVIELGRTLAPMPEDEHSAANKVQGCASQVWLSKHMDDSRAVPVLNYLGDSDAHIVRGL
IAILLTLYSGRTPQEILTIDAPAVFDELGFREHLTPQRSNGLRSMVERIRSDAREALAAAS

Sequences:

>Translated_141_residues
MTIDEIRDNFALLDDWDDRYRYVIELGRTLAPMPEDEHSAANKVQGCASQVWLSKHMDDSRAVPVLNYLGDSDAHIVRGL
IAILLTLYSGRTPQEILTIDAPAVFDELGFREHLTPQRSNGLRSMVERIRSDAREALAAAS
>Mature_140_residues
TIDEIRDNFALLDDWDDRYRYVIELGRTLAPMPEDEHSAANKVQGCASQVWLSKHMDDSRAVPVLNYLGDSDAHIVRGLI
AILLTLYSGRTPQEILTIDAPAVFDELGFREHLTPQRSNGLRSMVERIRSDAREALAAAS

Specific function: Unknown

COG id: COG2166

COG function: function code R; SufE protein probably involved in Fe-S center assembly

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sufE family [H]

Homologues:

Organism=Escherichia coli, GI1789176, Length=135, Percent_Identity=36.2962962962963, Blast_Score=105, Evalue=1e-24,
Organism=Escherichia coli, GI1787969, Length=117, Percent_Identity=41.025641025641, Blast_Score=105, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003808 [H]

Pfam domain/function: PF02657 SufE [H]

EC number: NA

Molecular weight: Translated: 15838; Mature: 15707

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIDEIRDNFALLDDWDDRYRYVIELGRTLAPMPEDEHSAANKVQGCASQVWLSKHMDDS
CCHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
RAVPVLNYLGDSDAHIVRGLIAILLTLYSGRTPQEILTIDAPAVFDELGFREHLTPQRSN
CCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHEECCCHHHHHHHCHHHHCCCCCCC
GLRSMVERIRSDAREALAAAS
CHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TIDEIRDNFALLDDWDDRYRYVIELGRTLAPMPEDEHSAANKVQGCASQVWLSKHMDDS
CHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
RAVPVLNYLGDSDAHIVRGLIAILLTLYSGRTPQEILTIDAPAVFDELGFREHLTPQRSN
CCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHEECCCHHHHHHHCHHHHCCCCCCC
GLRSMVERIRSDAREALAAAS
CHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7756693; 11481430 [H]