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The map label for this gene is amiR [H]

Identifier: 146339664

GI number: 146339664

Start: 2859670

End: 2860293

Strand: Reverse

Name: amiR [H]

Synonym: BRADO2658

Alternate gene names: 146339664

Gene position: 2860293-2859670 (Counterclockwise)

Preceding gene: 146339665

Following gene: 146339663

Centisome position: 38.36

GC content: 65.22

Gene sequence:

>624_bases
ATGAAGCCCGGCGTGCGCCGCCTCATCGAGGAGCTGCGAGGCGCCCGCGTGCTGGTCATCCATCCGCGCGATGCCGAAGG
CGACGCACTGATCGATCAGCTCAAGCGCATCGGCTGCAACGTGCGCGGCGTGTGGCCGCCGCCGGCCGCGATCCCGCACG
ACATCGACACGGTGTTCCAGCTGATCGAGACCTCGGAGGAGATGATCTTCCCGGAAGGCACCACCGAGCATCCGCTCACC
TTCATCGCCATCGTCGACTACGAGAATCCGACCATCCTCAAGCGCCTGCTCGACAGCAACGCGCATGGCGTCGTCAACAA
GCCGATCCGCTCGTTCGGCATCCTCTCTTCGCTCGTGCTGGCCCGCTCGCTGCGCGGCTACACGCGACGGCTCGAAGGCA
AGGTGCAGAAGCTGGAGGAGACGTTGAAAGCGCGGCGCGACGTCGACAAGGCGGTGAAGATCCTGATGGGGTTGAAGCAG
GTGGGCGAGGTCGAGGCCTATGAGCTGATCCGCGCCCAGGCGACGCAGAAGCGCGTGGCGATGGCCGACATCGCGATCTC
GATCATCAACGCACAGGAGACATTGGGCGGATTGGGGGTGCTGGATGCGCCGGTTTCCCGCTGA

Upstream 100 bases:

>100_bases
GTAAGAGCCCGATCAAGCCGGATCCGTATCTGTCGGTGTCGCCGATCGGCGGCCGCTGGCTGAGCGAAGAGGCGCTGTCA
GCATGAGGCCGGATGACCGC

Downstream 100 bases:

>100_bases
GGGCCAATTGTTGCGCCCACGCGTTGGGCAGCGGCGGCCTCAAATTTTTGCAGGCGACGGCGTTGACTTCGTATCGCGCA
TTTGAGTTACTTGTGGTCGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 207; Mature: 207

Protein sequence:

>207_residues
MKPGVRRLIEELRGARVLVIHPRDAEGDALIDQLKRIGCNVRGVWPPPAAIPHDIDTVFQLIETSEEMIFPEGTTEHPLT
FIAIVDYENPTILKRLLDSNAHGVVNKPIRSFGILSSLVLARSLRGYTRRLEGKVQKLEETLKARRDVDKAVKILMGLKQ
VGEVEAYELIRAQATQKRVAMADIAISIINAQETLGGLGVLDAPVSR

Sequences:

>Translated_207_residues
MKPGVRRLIEELRGARVLVIHPRDAEGDALIDQLKRIGCNVRGVWPPPAAIPHDIDTVFQLIETSEEMIFPEGTTEHPLT
FIAIVDYENPTILKRLLDSNAHGVVNKPIRSFGILSSLVLARSLRGYTRRLEGKVQKLEETLKARRDVDKAVKILMGLKQ
VGEVEAYELIRAQATQKRVAMADIAISIINAQETLGGLGVLDAPVSR
>Mature_207_residues
MKPGVRRLIEELRGARVLVIHPRDAEGDALIDQLKRIGCNVRGVWPPPAAIPHDIDTVFQLIETSEEMIFPEGTTEHPLT
FIAIVDYENPTILKRLLDSNAHGVVNKPIRSFGILSSLVLARSLRGYTRRLEGKVQKLEETLKARRDVDKAVKILMGLKQ
VGEVEAYELIRAQATQKRVAMADIAISIINAQETLGGLGVLDAPVSR

Specific function: Positive controlling element of AmiE, the gene for aliphatic amidase. Acts as a transcriptional antitermination factor. It is thought to allow RNA polymerase read through a rho- independent transcription terminator between the AmiE promoter and gene [H]

COG id: COG3707

COG function: function code T; Response regulator with putative antiterminator output domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ANTAR domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005561
- InterPro:   IPR011006
- InterPro:   IPR008327
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03861 ANTAR [H]

EC number: NA

Molecular weight: Translated: 22928; Mature: 22928

Theoretical pI: Translated: 9.08; Mature: 9.08

Prosite motif: PS50921 ANTAR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPGVRRLIEELRGARVLVIHPRDAEGDALIDQLKRIGCNVRGVWPPPAAIPHDIDTVFQ
CCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
LIETSEEMIFPEGTTEHPLTFIAIVDYENPTILKRLLDSNAHGVVNKPIRSFGILSSLVL
HHHHHHHEECCCCCCCCCEEEEEEEECCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
ARSLRGYTRRLEGKVQKLEETLKARRDVDKAVKILMGLKQVGEVEAYELIRAQATQKRVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
MADIAISIINAQETLGGLGVLDAPVSR
HHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKPGVRRLIEELRGARVLVIHPRDAEGDALIDQLKRIGCNVRGVWPPPAAIPHDIDTVFQ
CCHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHH
LIETSEEMIFPEGTTEHPLTFIAIVDYENPTILKRLLDSNAHGVVNKPIRSFGILSSLVL
HHHHHHHEECCCCCCCCCEEEEEEEECCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
ARSLRGYTRRLEGKVQKLEETLKARRDVDKAVKILMGLKQVGEVEAYELIRAQATQKRVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
MADIAISIINAQETLGGLGVLDAPVSR
HHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2495988; 10984043; 7539417; 10508151 [H]