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The map label for this gene is czcR [H]

Identifier: 146339546

GI number: 146339546

Start: 2711388

End: 2712350

Strand: Reverse

Name: czcR [H]

Synonym: BRADO2537

Alternate gene names: 146339546

Gene position: 2712350-2711388 (Counterclockwise)

Preceding gene: 146339553

Following gene: 146339545

Centisome position: 36.38

GC content: 67.6

Gene sequence:

>963_bases
ATGTTGGATTTCCGTTCCATCGAGACGTTTCTCTGGGTCGCGAAGCTCGGCAGCTTCCGCGGTGCGGCGCAGCGCCTCAA
TACTACCCAGCCGGCGATCTCCCAGCGCATCGCCCAGCTCGAGCGCGAGCTCGGCGTCAAGCTGCTGAACCGCGACCATC
GCGTGGCCTCGCCGACCGCGGTCGGACGGCAGATGCTGGTCTATGCCGAGAAGCTGATCGGCCTGCGCGCGGAGATGCTG
GCCGAGGTCGGCGACCGCTCGGCGATGCGCGGCGTGCTCCGGCTCGGCGTCGCCGAGACCATCGTGCACGATTGGCTGCC
GCGGCTGATCAAGAGCGTCAACAAGAGCTATCCAAACCTGTCGCTGGAGATCGAGGTCGACGTCACGCCGAACCTGCACG
CGCGCCTGCTGGCGCAGGAGATCGAGCTTGCCTTCGCGCTCGGCGCGCCCTCGGAATCGGGCATCCGCAGCCGCGTGCTG
TGCGACTATCCGATCAGCTTCCTCGCCAGCCCCGCGCTCGGCTTCGGCGAGGGCATCGTCACGGCCGAGCAGATGGCGCG
TTTCCCGATCATCACCTTCCCGCGCAACACCCAACCCTATGACAATGTCCGATCGCTGTTCAACCGCCCGCATCTGCCGC
CGATGCGGCTGCACGCCAGCGCCTCGCTTGCGACGGTGATTCACATGGCCGTCGAAGGCCTCGGCGTCGCCGTCATTCCC
GCCGCCATCGTCGCCAACGAGATCGAGAACGGCCGCCTGCAGGAGCTCGAGACCGACCTGCGCATCCCGCCGCTGACTTT
CACCGCGAGCTGGCTGTCATCGCCCGAGATGGTCGCGATCGAGCGCGTCGCCGAGCTCGCCGCCCGGACGGCGCAGACGG
CCAGCCATCCCGCCACATCGGTTGACGCCGCCGTCGCGGCGCGCGATGGACAGGATGCCGGAGTACAAGGACTAACAGCA
TGA

Upstream 100 bases:

>100_bases
CTAAGATCTCGACAAACTCACTCAACATCAGGCATGCTATAAAGTCTAATCTTCGTTTTTAATCAGGATCGATAAAACAA
ATTGATCCGAGGCGGGGCCA

Downstream 100 bases:

>100_bases
GCCGCGCCGCCACCAATCTGCAGATCGATTCCGCCCGCCTCTGGGACAGCATCCACGAGACCGCCAAATTCGGCGCCACG
CCGAAGGGCGGCGTGCGCCG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MLDFRSIETFLWVAKLGSFRGAAQRLNTTQPAISQRIAQLERELGVKLLNRDHRVASPTAVGRQMLVYAEKLIGLRAEML
AEVGDRSAMRGVLRLGVAETIVHDWLPRLIKSVNKSYPNLSLEIEVDVTPNLHARLLAQEIELAFALGAPSESGIRSRVL
CDYPISFLASPALGFGEGIVTAEQMARFPIITFPRNTQPYDNVRSLFNRPHLPPMRLHASASLATVIHMAVEGLGVAVIP
AAIVANEIENGRLQELETDLRIPPLTFTASWLSSPEMVAIERVAELAARTAQTASHPATSVDAAVAARDGQDAGVQGLTA

Sequences:

>Translated_320_residues
MLDFRSIETFLWVAKLGSFRGAAQRLNTTQPAISQRIAQLERELGVKLLNRDHRVASPTAVGRQMLVYAEKLIGLRAEML
AEVGDRSAMRGVLRLGVAETIVHDWLPRLIKSVNKSYPNLSLEIEVDVTPNLHARLLAQEIELAFALGAPSESGIRSRVL
CDYPISFLASPALGFGEGIVTAEQMARFPIITFPRNTQPYDNVRSLFNRPHLPPMRLHASASLATVIHMAVEGLGVAVIP
AAIVANEIENGRLQELETDLRIPPLTFTASWLSSPEMVAIERVAELAARTAQTASHPATSVDAAVAARDGQDAGVQGLTA
>Mature_320_residues
MLDFRSIETFLWVAKLGSFRGAAQRLNTTQPAISQRIAQLERELGVKLLNRDHRVASPTAVGRQMLVYAEKLIGLRAEML
AEVGDRSAMRGVLRLGVAETIVHDWLPRLIKSVNKSYPNLSLEIEVDVTPNLHARLLAQEIELAFALGAPSESGIRSRVL
CDYPISFLASPALGFGEGIVTAEQMARFPIITFPRNTQPYDNVRSLFNRPHLPPMRLHASASLATVIHMAVEGLGVAVIP
AAIVANEIENGRLQELETDLRIPPLTFTASWLSSPEMVAIERVAELAARTAQTASHPATSVDAAVAARDGQDAGVQGLTA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=164, Percent_Identity=31.7073170731707, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1786401, Length=276, Percent_Identity=27.8985507246377, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789639, Length=268, Percent_Identity=29.4776119402985, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1788626, Length=248, Percent_Identity=27.0161290322581, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1787879, Length=256, Percent_Identity=26.171875, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1788481, Length=260, Percent_Identity=26.9230769230769, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1786713, Length=306, Percent_Identity=24.8366013071895, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI157672245, Length=152, Percent_Identity=33.5526315789474, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1789173, Length=252, Percent_Identity=27.7777777777778, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1787806, Length=244, Percent_Identity=23.3606557377049, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI48994962, Length=173, Percent_Identity=28.3236994219653, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1788297, Length=246, Percent_Identity=24.390243902439, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1790262, Length=252, Percent_Identity=21.4285714285714, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI87082132, Length=260, Percent_Identity=23.8461538461538, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI1787530, Length=236, Percent_Identity=25.4237288135593, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34763; Mature: 34763

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDFRSIETFLWVAKLGSFRGAAQRLNTTQPAISQRIAQLERELGVKLLNRDHRVASPTA
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
VGRQMLVYAEKLIGLRAEMLAEVGDRSAMRGVLRLGVAETIVHDWLPRLIKSVNKSYPNL
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
SLEIEVDVTPNLHARLLAQEIELAFALGAPSESGIRSRVLCDYPISFLASPALGFGEGIV
EEEEEEECCCCHHHHHHHHHHHHHHEECCCCCCCCHHCEEECCCHHHHHCCCCCCCCCHH
TAEQMARFPIITFPRNTQPYDNVRSLFNRPHLPPMRLHASASLATVIHMAVEGLGVAVIP
HHHHHHCCCEEECCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHH
AAIVANEIENGRLQELETDLRIPPLTFTASWLSSPEMVAIERVAELAARTAQTASHPATS
HHHHHHHCCCCHHHHHHHCCCCCCCEEEHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCH
VDAAVAARDGQDAGVQGLTA
HHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MLDFRSIETFLWVAKLGSFRGAAQRLNTTQPAISQRIAQLERELGVKLLNRDHRVASPTA
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
VGRQMLVYAEKLIGLRAEMLAEVGDRSAMRGVLRLGVAETIVHDWLPRLIKSVNKSYPNL
HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
SLEIEVDVTPNLHARLLAQEIELAFALGAPSESGIRSRVLCDYPISFLASPALGFGEGIV
EEEEEEECCCCHHHHHHHHHHHHHHEECCCCCCCCHHCEEECCCHHHHHCCCCCCCCCHH
TAEQMARFPIITFPRNTQPYDNVRSLFNRPHLPPMRLHASASLATVIHMAVEGLGVAVIP
HHHHHHCCCEEECCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHH
AAIVANEIENGRLQELETDLRIPPLTFTASWLSSPEMVAIERVAELAARTAQTASHPATS
HHHHHHHCCCCHHHHHHHCCCCCCCEEEHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCH
VDAAVAARDGQDAGVQGLTA
HHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA