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The map label for this gene is ydcV [H]

Identifier: 146339553

GI number: 146339553

Start: 2718508

End: 2719410

Strand: Reverse

Name: ydcV [H]

Synonym: BRADO2544

Alternate gene names: 146339553

Gene position: 2719410-2718508 (Counterclockwise)

Preceding gene: 146339554

Following gene: 146339546

Centisome position: 36.47

GC content: 65.67

Gene sequence:

>903_bases
ATGGGAGACAAGCGCCCCCGCTCCTTCTACATCCTCGCGGCGTTCTTCTCGGCCTATGTGCTGTTCCTGTACGGGCCGAT
GATCGCGATCTACATCCTGTCGTTCCAGGGCCCGGACGGCGGCCTCACCTTCCCGATGAACGGCGTGTCGCTGACCTGGT
TCGGAAAGGTGTTTTCCGGCGGCGGCATCGTCGACATCGGCGCCGCCTTCAAGCGCTCGCTGGCACTCGGGCTCGTGGTG
ATGGTCATCACGGTCGTGCTGTCGGTCGCGGCAGGCATGGCGTTCCGCAAGCCGTTCCGCGGCGCCTCGATGCTGTTCTA
CACCGCGATCGCCAGCCTGATCATGCCCTCGATCATCACCTCGCTCGGCATCGCGCTCGAGTTCCGGCTGGTCGACGACT
TCATCAACAAGCACGCCGCCGATTATGGCCTGGGCTGGCTGGCCGAGGGGCACACCACCGCGATGGGCCTGTTCACCTCC
GGCCTCGGCGCGCACCTGACCTGGACCTTGCCGTTCGGCCTCCTGATCATGTTCGCGATCTTCAACCGCTTCGACGGCCG
CCTCGAGGAAGCCGCCCGCGACCTCGGCGCCACCCCCTGGCAGACCTTCCGCCACGTCGTGCTGCCGATCATTCTGCCGT
CCGTCGTCGGCATCGGCCTGTTCGGCTTCACGCTGTCCTGGGACGAACTCGCCCGTTCGAGCCAGGCTATCGGCTCGGTG
AACACGCTGCCGCTGGAACTGCAGGGCCTGACGACGACGGTGACCAAGCCCGACATCTACGCGCTGGGCACGCTGACCTC
GGCGGTGTCGTTCATGGTGATCTTCGCCGCGCTGTCGGTGATTTTGGTGCTACAGGCCCGCCAGAGACGGCAGGGGTCGG
ATGCCGGCAAAGGGATGGTGTAA

Upstream 100 bases:

>100_bases
CCCGGCCGCCGCGGCGAATGCCGTGATCCTGCTCGGCATCACCATCATCATCATCTCCGCGCTGACGCGGATCGTCGACG
TGCGCAAGGAGCTCTGAGAG

Downstream 100 bases:

>100_bases
GAGTTCACGCCGAAGCGGTCACGACCGAACTCATTGCCGCGATGTCTAGCGACAAGCCGCGAGCGCGGTGCTCGTATATG
CGCCCTCGCCCCTTGTGGGA

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 300; Mature: 299

Protein sequence:

>300_residues
MGDKRPRSFYILAAFFSAYVLFLYGPMIAIYILSFQGPDGGLTFPMNGVSLTWFGKVFSGGGIVDIGAAFKRSLALGLVV
MVITVVLSVAAGMAFRKPFRGASMLFYTAIASLIMPSIITSLGIALEFRLVDDFINKHAADYGLGWLAEGHTTAMGLFTS
GLGAHLTWTLPFGLLIMFAIFNRFDGRLEEAARDLGATPWQTFRHVVLPIILPSVVGIGLFGFTLSWDELARSSQAIGSV
NTLPLELQGLTTTVTKPDIYALGTLTSAVSFMVIFAALSVILVLQARQRRQGSDAGKGMV

Sequences:

>Translated_300_residues
MGDKRPRSFYILAAFFSAYVLFLYGPMIAIYILSFQGPDGGLTFPMNGVSLTWFGKVFSGGGIVDIGAAFKRSLALGLVV
MVITVVLSVAAGMAFRKPFRGASMLFYTAIASLIMPSIITSLGIALEFRLVDDFINKHAADYGLGWLAEGHTTAMGLFTS
GLGAHLTWTLPFGLLIMFAIFNRFDGRLEEAARDLGATPWQTFRHVVLPIILPSVVGIGLFGFTLSWDELARSSQAIGSV
NTLPLELQGLTTTVTKPDIYALGTLTSAVSFMVIFAALSVILVLQARQRRQGSDAGKGMV
>Mature_299_residues
GDKRPRSFYILAAFFSAYVLFLYGPMIAIYILSFQGPDGGLTFPMNGVSLTWFGKVFSGGGIVDIGAAFKRSLALGLVVM
VITVVLSVAAGMAFRKPFRGASMLFYTAIASLIMPSIITSLGIALEFRLVDDFINKHAADYGLGWLAEGHTTAMGLFTSG
LGAHLTWTLPFGLLIMFAIFNRFDGRLEEAARDLGATPWQTFRHVVLPIILPSVVGIGLFGFTLSWDELARSSQAIGSVN
TLPLELQGLTTTVTKPDIYALGTLTSAVSFMVIFAALSVILVLQARQRRQGSDAGKGMV

Specific function: Probably part of the binding-protein-dependent transport system ydcSTUV; probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787714, Length=248, Percent_Identity=29.8387096774194, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1787368, Length=137, Percent_Identity=32.8467153284672, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1787081, Length=280, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32279; Mature: 32148

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDKRPRSFYILAAFFSAYVLFLYGPMIAIYILSFQGPDGGLTFPMNGVSLTWFGKVFSG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEECCCCCCEEEEEHHHHCC
GGIVDIGAAFKRSLALGLVVMVITVVLSVAAGMAFRKPFRGASMLFYTAIASLIMPSIIT
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
SLGIALEFRLVDDFINKHAADYGLGWLAEGHTTAMGLFTSGLGAHLTWTLPFGLLIMFAI
HHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHCCCCCCEEEHHHHHHHHHHHH
FNRFDGRLEEAARDLGATPWQTFRHVVLPIILPSVVGIGLFGFTLSWDELARSSQAIGSV
HHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC
NTLPLELQGLTTTVTKPDIYALGTLTSAVSFMVIFAALSVILVLQARQRRQGSDAGKGMV
CCCCEEEECCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
GDKRPRSFYILAAFFSAYVLFLYGPMIAIYILSFQGPDGGLTFPMNGVSLTWFGKVFSG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEECCCCCCEEEEEHHHHCC
GGIVDIGAAFKRSLALGLVVMVITVVLSVAAGMAFRKPFRGASMLFYTAIASLIMPSIIT
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
SLGIALEFRLVDDFINKHAADYGLGWLAEGHTTAMGLFTSGLGAHLTWTLPFGLLIMFAI
HHHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHCCCCCCEEEHHHHHHHHHHHH
FNRFDGRLEEAARDLGATPWQTFRHVVLPIILPSVVGIGLFGFTLSWDELARSSQAIGSV
HHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC
NTLPLELQGLTTTVTKPDIYALGTLTSAVSFMVIFAALSVILVLQARQRRQGSDAGKGMV
CCCCEEEECCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]