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The map label for this gene is araC [C]

Identifier: 146339370

GI number: 146339370

Start: 2504361

End: 2505281

Strand: Direct

Name: araC [C]

Synonym: BRADO2351

Alternate gene names: 146339370

Gene position: 2504361-2505281 (Clockwise)

Preceding gene: 146339368

Following gene: 146339371

Centisome position: 33.59

GC content: 68.3

Gene sequence:

>921_bases
ATGCCACGCTTTCGCACCAAACCGTCGATCCCCGCCTTCGCGCTGTATGGCGAGGCCTCCGCCGCGCAGCCCGACATGCT
GCACATCGAGCCGATCCAGGTGCGCAGCAAGCTGTATCGCTGGGAGATCGAGGCGCATACGCATCAGGGTCTGCACCAGA
TCCTGTGGGTCGCCGCCGGCCCGGCCGAGATCGCCCTGGACGAACGCCGCGAGCGTTGCAGCGGCCCGGTTGCGGTGATC
ATTCCGCCCGGTGTCGTGCATGCCTTCCGCTTCTCGCGGGAGACCGACGGTTTCGTTCTCACGTTCAATCCGCGTGCCGT
GGTCGAGGGCGACGTGCCGGCCACCGGCGAAGCGCTCCGCGACCTGTTTGCAACAGCGCAGATCCTGCATCTCGAGCCGC
AGGCGGTGGCGACGGGCCGCATTGCGGCGTTGTTCGTCGACCTCGCCGACGAGTTCGGCGCCGCCGACTCGGCTGCCTCG
CCGGTGCCGCATTGGCTCGGGCGTTCGATCGTGTGGCGGCTTGCGCAGCAGAGCGCGCGGCTGTCGCAGGGCGGACGGCG
TGGCAGCGGGCATGCGGATCTGTTCACGCGCTTCATCGTGCTGGTCGAGGCCCATCACCGCGATCATTGGTCGGTCGCCC
GTTATGCCGACGAGCTCGGCATGACGCCGGAGCGGCTGAACCGGCTGACGCGGACGGAGACCGGACAGTCTGCGCTCGAT
ATCGTGCATGCGCGGCTCGCCCGCGAGGCGTGCCGACGGCTGACTTATATTGCAGCGCCGGTGTCGAAGCTGGCATTCGA
GCTCGGCTTCAAGGATCCCGCCTATTTCTGTCGCTTCTTCAAGCGCCACACCGGCGCCAGCCCGCGTGACTATCGCCGCG
CGATGGGCGTGGCCGACGAGGCCGCCGGTTCCGGCCGTTGA

Upstream 100 bases:

>100_bases
TTGTTCTTTTCACGATCCTAAGCGGAGCGTCGCCGCCGCGTAAGACACGAACGCCGGTCAAGACTTGCACTTTTCCGACA
TCCCGGCTTAGATCGCGCTC

Downstream 100 bases:

>100_bases
CCCCGCCGGGTCCGGATACCGCTGCGGTGTTCCGTCGCGACGTTGGAAAAGTGCAAGAGAATGCAGCGTCCATCCAAGTG
AGCAGGCACGCTCCTTGATA

Product: AraC/XylS family transcription factor

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator PobR; 4-Hydroxyphenylacetate Catabolism Regulatory Protein HpaA; Transcriptional Regulatory Protein; Helix-Turn-Helix- Domain Containing Protein AraC Type; Regulator Of 4HPA-Hydroxylase Operon; AraC-Family Transcriptional Regulator; PobR Regulator; Transcriptional Regulator AraC Family Protein; Transcriptional Regulator Pobr Arac Family Protein; AraC Family Regulatory Protein; AraC Family Transcriptional Regulatory Protein; AraC Family Transcription Regulator; AraC/XylS Family Transcription Factor; AraC-Type Regulatory Protein; AraC-Type Transcription Regulator; Bacterial Regulatory Helix-Turn-Helix Protein; Helix-Turn-Helix AraC Type; Regulator Of 4hpa-Hydroxylase Operon; Transcriptional Regulator Protein; Transcription Regulator; AraC Family Transcription Regulator Protein

Number of amino acids: Translated: 306; Mature: 305

Protein sequence:

>306_residues
MPRFRTKPSIPAFALYGEASAAQPDMLHIEPIQVRSKLYRWEIEAHTHQGLHQILWVAAGPAEIALDERRERCSGPVAVI
IPPGVVHAFRFSRETDGFVLTFNPRAVVEGDVPATGEALRDLFATAQILHLEPQAVATGRIAALFVDLADEFGAADSAAS
PVPHWLGRSIVWRLAQQSARLSQGGRRGSGHADLFTRFIVLVEAHHRDHWSVARYADELGMTPERLNRLTRTETGQSALD
IVHARLAREACRRLTYIAAPVSKLAFELGFKDPAYFCRFFKRHTGASPRDYRRAMGVADEAAGSGR

Sequences:

>Translated_306_residues
MPRFRTKPSIPAFALYGEASAAQPDMLHIEPIQVRSKLYRWEIEAHTHQGLHQILWVAAGPAEIALDERRERCSGPVAVI
IPPGVVHAFRFSRETDGFVLTFNPRAVVEGDVPATGEALRDLFATAQILHLEPQAVATGRIAALFVDLADEFGAADSAAS
PVPHWLGRSIVWRLAQQSARLSQGGRRGSGHADLFTRFIVLVEAHHRDHWSVARYADELGMTPERLNRLTRTETGQSALD
IVHARLAREACRRLTYIAAPVSKLAFELGFKDPAYFCRFFKRHTGASPRDYRRAMGVADEAAGSGR
>Mature_305_residues
PRFRTKPSIPAFALYGEASAAQPDMLHIEPIQVRSKLYRWEIEAHTHQGLHQILWVAAGPAEIALDERRERCSGPVAVII
PPGVVHAFRFSRETDGFVLTFNPRAVVEGDVPATGEALRDLFATAQILHLEPQAVATGRIAALFVDLADEFGAADSAASP
VPHWLGRSIVWRLAQQSARLSQGGRRGSGHADLFTRFIVLVEAHHRDHWSVARYADELGMTPERLNRLTRTETGQSALDI
VHARLAREACRRLTYIAAPVSKLAFELGFKDPAYFCRFFKRHTGASPRDYRRAMGVADEAAGSGR

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33904; Mature: 33773

Theoretical pI: Translated: 9.17; Mature: 9.17

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRFRTKPSIPAFALYGEASAAQPDMLHIEPIQVRSKLYRWEIEAHTHQGLHQILWVAAG
CCCCCCCCCCCEEEEECCCCCCCCCCEEECHHHHHHHHHHEEEHHHHHHHHHHHHHHCCC
PAEIALDERRERCSGPVAVIIPPGVVHAFRFSRETDGFVLTFNPRAVVEGDVPATGEALR
CHHHHHHHHHHHHCCCEEEEECCHHHHHHHHCCCCCCEEEEECCCEEEECCCCCCHHHHH
DLFATAQILHLEPQAVATGRIAALFVDLADEFGAADSAASPVPHWLGRSIVWRLAQQSAR
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
LSQGGRRGSGHADLFTRFIVLVEAHHRDHWSVARYADELGMTPERLNRLTRTETGQSALD
HHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHH
IVHARLAREACRRLTYIAAPVSKLAFELGFKDPAYFCRFFKRHTGASPRDYRRAMGVADE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCC
AAGSGR
CCCCCC
>Mature Secondary Structure 
PRFRTKPSIPAFALYGEASAAQPDMLHIEPIQVRSKLYRWEIEAHTHQGLHQILWVAAG
CCCCCCCCCCEEEEECCCCCCCCCCEEECHHHHHHHHHHEEEHHHHHHHHHHHHHHCCC
PAEIALDERRERCSGPVAVIIPPGVVHAFRFSRETDGFVLTFNPRAVVEGDVPATGEALR
CHHHHHHHHHHHHCCCEEEEECCHHHHHHHHCCCCCCEEEEECCCEEEECCCCCCHHHHH
DLFATAQILHLEPQAVATGRIAALFVDLADEFGAADSAASPVPHWLGRSIVWRLAQQSAR
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
LSQGGRRGSGHADLFTRFIVLVEAHHRDHWSVARYADELGMTPERLNRLTRTETGQSALD
HHCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCHHHHH
IVHARLAREACRRLTYIAAPVSKLAFELGFKDPAYFCRFFKRHTGASPRDYRRAMGVADE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHCCCCC
AAGSGR
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA