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The map label for this gene is ydbM [H]

Identifier: 146339337

GI number: 146339337

Start: 2469798

End: 2471027

Strand: Reverse

Name: ydbM [H]

Synonym: BRADO2318

Alternate gene names: 146339337

Gene position: 2471027-2469798 (Counterclockwise)

Preceding gene: 146339338

Following gene: 146339336

Centisome position: 33.14

GC content: 67.48

Gene sequence:

>1230_bases
ATGTTCGATCCGGCTGCCTATCGGCTGACGTCTGAGCAGGCCGACATCATCAGCCGCGCACGGCAACTCGGGCAGAGCGT
GCTGGCCGGCCGCGCGGCCATCTGGGACCGCGAGGCGACGTTCCCGACCGAGAACTACAAGGACCTGCATCGCGCCGGCC
TGCTCGGCATCTCCGTACCGAAAGAGCTGGGCGGCCTCGGCGCCGGTTATCAGACCTACGCGCTCACCGCCGCCGAGATC
GGCCGCTACTGCGGCGCGACCGCGCTGACCTGGAACATGCATGTCTGCTCGACCTTGTGGTCGGGACCGCTCGCCGACGA
TCTCGACATGGAGGACGACGTCCGCGCCGAGCACCAGCGGCGGCGTGCGATCCACTATAAGCGCATCGTCGAGGACGGAG
CCATCTACTCGCAGCCGTTCTCCGAGGGCGGCGCGGCGGCGGCGGGCGGCGTCGCGTTCGGCACCGAGGCGAAGCCGGTG
AAGGGCGGCTGGCTGGTCAGCGGCAAGAAGATCTTTGCCTCGCTCTCCGGACACGCTGACTATTACGGCGTGCTGTGCAC
GGAGATCAGCGAGGGCGAGAAGGCCTCGCGGCGGAATACGCTGTATCTCGCGATACCCGCGAAGAGCGAGGGCGTCTCGG
TGGTCGGCGATTGGGACCCGCTCGGCATGCGCGGCACCGTGTCGCGCACGCTGATCTTCAAGGACGTGTTCGTCGACGAG
GATGCGGCGCTGATGCCGCGCGGCGTCTATTTCCAGGCGGCGATGCGCTGGCCGCACATGTTCATGACCTTGTCGCCCAC
CTATATGGGCCTGGCGCAGGCCGCCTATGACTTCACCCGAAAGTATCTGCGCGGCGAGGTGCCGGGCATGCCGCCGGTCA
AGCGGCGGATGTATCCCACCAAGCAGATCGCGGTGGCGCAGATGCAGATCAAGCTGGAGCAGATCAAGGGCATCTGGTTC
CAGGCGGTCACCGAGGCGCGGGCCAATCCGACCAAGGAACAGGTGCTGCGCGCCTACGCCGCGCAGTACTCGGTGATGGA
AGGCGCCAACGAGCTCGCCGCGCTCGCGATCCGCACCTGCGGCGGGCAGTCGATGCTGAAGACCCTGCCGCTGGAGCGCA
TCTATCGCGACAGCCGCTGTGGCTCGCTGATGCTGCCCTGGACCGCCGAGCTGTGCCTTGACCGCATCGGCCGCGAGGCG
CTGTACGAGCCCGGCGAGACGGACGAGTAA

Upstream 100 bases:

>100_bases
ACTCCTTTCTGAAATCATACGGCACGACGACTGCGGAGGCACGATGACCATCCAGGTGCAGAAGACGGCAACGGCCTCCG
GTGAGGCGCTCGATGCGCCG

Downstream 100 bases:

>100_bases
AGCGTGGACCTCTGCAGCCTGATCGAGCGCAACGCGGCGTTCACGCCGGACAAGCCGGCGATCCGTTTCGAAGGCGCGAC
GCTGACCTATGCCGAGTTCA

Product: putative acyl-CoA dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 409; Mature: 409

Protein sequence:

>409_residues
MFDPAAYRLTSEQADIISRARQLGQSVLAGRAAIWDREATFPTENYKDLHRAGLLGISVPKELGGLGAGYQTYALTAAEI
GRYCGATALTWNMHVCSTLWSGPLADDLDMEDDVRAEHQRRRAIHYKRIVEDGAIYSQPFSEGGAAAAGGVAFGTEAKPV
KGGWLVSGKKIFASLSGHADYYGVLCTEISEGEKASRRNTLYLAIPAKSEGVSVVGDWDPLGMRGTVSRTLIFKDVFVDE
DAALMPRGVYFQAAMRWPHMFMTLSPTYMGLAQAAYDFTRKYLRGEVPGMPPVKRRMYPTKQIAVAQMQIKLEQIKGIWF
QAVTEARANPTKEQVLRAYAAQYSVMEGANELAALAIRTCGGQSMLKTLPLERIYRDSRCGSLMLPWTAELCLDRIGREA
LYEPGETDE

Sequences:

>Translated_409_residues
MFDPAAYRLTSEQADIISRARQLGQSVLAGRAAIWDREATFPTENYKDLHRAGLLGISVPKELGGLGAGYQTYALTAAEI
GRYCGATALTWNMHVCSTLWSGPLADDLDMEDDVRAEHQRRRAIHYKRIVEDGAIYSQPFSEGGAAAAGGVAFGTEAKPV
KGGWLVSGKKIFASLSGHADYYGVLCTEISEGEKASRRNTLYLAIPAKSEGVSVVGDWDPLGMRGTVSRTLIFKDVFVDE
DAALMPRGVYFQAAMRWPHMFMTLSPTYMGLAQAAYDFTRKYLRGEVPGMPPVKRRMYPTKQIAVAQMQIKLEQIKGIWF
QAVTEARANPTKEQVLRAYAAQYSVMEGANELAALAIRTCGGQSMLKTLPLERIYRDSRCGSLMLPWTAELCLDRIGREA
LYEPGETDE
>Mature_409_residues
MFDPAAYRLTSEQADIISRARQLGQSVLAGRAAIWDREATFPTENYKDLHRAGLLGISVPKELGGLGAGYQTYALTAAEI
GRYCGATALTWNMHVCSTLWSGPLADDLDMEDDVRAEHQRRRAIHYKRIVEDGAIYSQPFSEGGAAAAGGVAFGTEAKPV
KGGWLVSGKKIFASLSGHADYYGVLCTEISEGEKASRRNTLYLAIPAKSEGVSVVGDWDPLGMRGTVSRTLIFKDVFVDE
DAALMPRGVYFQAAMRWPHMFMTLSPTYMGLAQAAYDFTRKYLRGEVPGMPPVKRRMYPTKQIAVAQMQIKLEQIKGIWF
QAVTEARANPTKEQVLRAYAAQYSVMEGANELAALAIRTCGGQSMLKTLPLERIYRDSRCGSLMLPWTAELCLDRIGREA
LYEPGETDE

Specific function: Unknown

COG id: COG1960

COG function: function code I; Acyl-CoA dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4557233, Length=367, Percent_Identity=26.158038147139, Blast_Score=106, Evalue=5e-23,
Organism=Homo sapiens, GI187960098, Length=381, Percent_Identity=21.7847769028871, Blast_Score=84, Evalue=3e-16,
Organism=Homo sapiens, GI4557231, Length=381, Percent_Identity=21.7847769028871, Blast_Score=83, Evalue=4e-16,
Organism=Homo sapiens, GI226958412, Length=385, Percent_Identity=24.9350649350649, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI226958414, Length=381, Percent_Identity=24.6719160104987, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI4501859, Length=380, Percent_Identity=21.5789473684211, Blast_Score=69, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17508101, Length=400, Percent_Identity=24.25, Blast_Score=82, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI17534899, Length=382, Percent_Identity=23.5602094240838, Blast_Score=77, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17570075, Length=383, Percent_Identity=21.9321148825065, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17569725, Length=387, Percent_Identity=21.9638242894057, Blast_Score=73, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17506239, Length=398, Percent_Identity=22.8643216080402, Blast_Score=66, Evalue=4e-11,
Organism=Drosophila melanogaster, GI21356377, Length=362, Percent_Identity=25.6906077348066, Blast_Score=96, Evalue=6e-20,
Organism=Drosophila melanogaster, GI24660351, Length=381, Percent_Identity=22.0472440944882, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24646207, Length=399, Percent_Identity=25.8145363408521, Blast_Score=75, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013107
- InterPro:   IPR006092
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF08028 Acyl-CoA_dh_2; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 45107; Mature: 45107

Theoretical pI: Translated: 7.46; Mature: 7.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDPAAYRLTSEQADIISRARQLGQSVLAGRAAIWDREATFPTENYKDLHRAGLLGISVP
CCCCHHEEECCHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCCCHHHHHHHCCEECCCC
KELGGLGAGYQTYALTAAEIGRYCGATALTWNMHVCSTLWSGPLADDLDMEDDVRAEHQR
HHHCCCCCCCHHHEEEHHHHHHHHCCEEEEECHHHHHHHHCCCCCCCCCCCHHHHHHHHH
RRAIHYKRIVEDGAIYSQPFSEGGAAAAGGVAFGTEAKPVKGGWLVSGKKIFASLSGHAD
HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCEEEECHHHHHHHCCCCC
YYGVLCTEISEGEKASRRNTLYLAIPAKSEGVSVVGDWDPLGMRGTVSRTLIFKDVFVDE
EEEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCCCHHHEEEEEHHEECC
DAALMPRGVYFQAAMRWPHMFMTLSPTYMGLAQAAYDFTRKYLRGEVPGMPPVKRRMYPT
CCCCCCCCHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCH
KQIAVAQMQIKLEQIKGIWFQAVTEARANPTKEQVLRAYAAQYSVMEGANELAALAIRTC
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHC
GGQSMLKTLPLERIYRDSRCGSLMLPWTAELCLDRIGREALYEPGETDE
CCHHHHHHCCHHHHHHCCCCCCEECCHHHHHHHHHHCHHHHCCCCCCCC
>Mature Secondary Structure
MFDPAAYRLTSEQADIISRARQLGQSVLAGRAAIWDREATFPTENYKDLHRAGLLGISVP
CCCCHHEEECCHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCCCHHHHHHHCCEECCCC
KELGGLGAGYQTYALTAAEIGRYCGATALTWNMHVCSTLWSGPLADDLDMEDDVRAEHQR
HHHCCCCCCCHHHEEEHHHHHHHHCCEEEEECHHHHHHHHCCCCCCCCCCCHHHHHHHHH
RRAIHYKRIVEDGAIYSQPFSEGGAAAAGGVAFGTEAKPVKGGWLVSGKKIFASLSGHAD
HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCEEEECHHHHHHHCCCCC
YYGVLCTEISEGEKASRRNTLYLAIPAKSEGVSVVGDWDPLGMRGTVSRTLIFKDVFVDE
EEEEEEEECCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCCCCCCHHHEEEEEHHEECC
DAALMPRGVYFQAAMRWPHMFMTLSPTYMGLAQAAYDFTRKYLRGEVPGMPPVKRRMYPT
CCCCCCCCHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCH
KQIAVAQMQIKLEQIKGIWFQAVTEARANPTKEQVLRAYAAQYSVMEGANELAALAIRTC
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHC
GGQSMLKTLPLERIYRDSRCGSLMLPWTAELCLDRIGREALYEPGETDE
CCHHHHHHCCHHHHHHCCCCCCEECCHHHHHHHHHHCHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]