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The map label for this gene is exbD [H]

Identifier: 146339256

GI number: 146339256

Start: 2374219

End: 2374623

Strand: Direct

Name: exbD [H]

Synonym: BRADO2227

Alternate gene names: 146339256

Gene position: 2374219-2374623 (Clockwise)

Preceding gene: 146339255

Following gene: 146339257

Centisome position: 31.84

GC content: 57.78

Gene sequence:

>405_bases
ATGCAGGTCCAAACCGAAAGCAAGCCCTATGACGACATCAACATCACGCCGATGCTCGATCTTGCCTACGTCCTACTGGT
GATCTTCATCATCATGACGACGGCAACCGTGCAGGGAATGAAGGTCAATCTGCCGAAGGCAAGTGCCGCGCCGAGCCTTG
CGCAGCAGACCACCAAGGCCATCACCGTGACCAATGACGGCAAGATCTTCCTGGATACAATCCCGGTCACGATGGCGGAA
CTCGAACAACGGCTTGTGCAGCAGCGCGCGCTGACTCCTGAATTTCCCATCGTACTCCGCGGCGATCGCGAGACCCAGTA
CCAGAACGTGGTCGACGTGCTCGATCTGCTCGGGCGTCTCAACTTCAATCAGGTCGGCATGGCCACCAAGCCGCTGGTGA
AGTGA

Upstream 100 bases:

>100_bases
GATGCCACCAGTGAGATGCAGGTGTTCATCGACGAGATGATCACACGCATCGCCGAGACCTATTCCGGCAACCACACGGC
ACAAGCAGCGGAGTGAGGCG

Downstream 100 bases:

>100_bases
GGGTAGGGCGAGCGCGTGCCATGAGCGACAACGATCAGACCGACAGCGACCAGCCGTCCGCGCGCCGCCTTGCGCTGATG
ATCGGCGGCGGGCTGGGCGT

Product: biopolymer transport protein ExbD/TolR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MQVQTESKPYDDINITPMLDLAYVLLVIFIIMTTATVQGMKVNLPKASAAPSLAQQTTKAITVTNDGKIFLDTIPVTMAE
LEQRLVQQRALTPEFPIVLRGDRETQYQNVVDVLDLLGRLNFNQVGMATKPLVK

Sequences:

>Translated_134_residues
MQVQTESKPYDDINITPMLDLAYVLLVIFIIMTTATVQGMKVNLPKASAAPSLAQQTTKAITVTNDGKIFLDTIPVTMAE
LEQRLVQQRALTPEFPIVLRGDRETQYQNVVDVLDLLGRLNFNQVGMATKPLVK
>Mature_134_residues
MQVQTESKPYDDINITPMLDLAYVLLVIFIIMTTATVQGMKVNLPKASAAPSLAQQTTKAITVTNDGKIFLDTIPVTMAE
LEQRLVQQRALTPEFPIVLRGDRETQYQNVVDVLDLLGRLNFNQVGMATKPLVK

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 14889; Mature: 14889

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVQTESKPYDDINITPMLDLAYVLLVIFIIMTTATVQGMKVNLPKASAAPSLAQQTTKA
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHCE
ITVTNDGKIFLDTIPVTMAELEQRLVQQRALTPEFPIVLRGDRETQYQNVVDVLDLLGRL
EEEECCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHCC
NFNQVGMATKPLVK
CCCCCCCCCCCCCC
>Mature Secondary Structure
MQVQTESKPYDDINITPMLDLAYVLLVIFIIMTTATVQGMKVNLPKASAAPSLAQQTTKA
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHCE
ITVTNDGKIFLDTIPVTMAELEQRLVQQRALTPEFPIVLRGDRETQYQNVVDVLDLLGRL
EEEECCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHCC
NFNQVGMATKPLVK
CCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]