| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is xfp
Identifier: 146339061
GI number: 146339061
Start: 2141749
End: 2144226
Strand: Reverse
Name: xfp
Synonym: BRADO2015
Alternate gene names: NA
Gene position: 2144226-2141749 (Counterclockwise)
Preceding gene: 146339065
Following gene: 146339060
Centisome position: 28.76
GC content: 65.54
Gene sequence:
>2478_bases ATGGTGCTGCGCTACTCTCCTGTACGCTCCCGCAGGCGCGAAGCGGAAGGCAAGCGAGGTCCCATGCAGAGTTCTCCCCA CCCCACCAGCCCAGCCGACGATCTCGATCTGCTCGACCGCTACTGGCGCGCCGCCAACTATCTCTCGGTGGGCCAGATCT ATTTGCTCGACAACCCGCTGCTGCGCGAGCCGCTGAAGCCCGAGCACATCAAGCCGCGCCTGCTCGGCCATTGGGGCACC ACGCCCGGGCTGAACTTCATCTACGCTCACCTCAACCGCGCCATCGCCGCCCAGGATCTCGACGTGATCTATGTCTGCGG CCCAGGCCATGGCGGCCCGGGCATGGTCGCCAACACCTATCTCGAAGGCAGCTACACCGAGTTCTATCCGGACATCACGC GCGATGTGGATGGCTTGCGCAAGCTGTTCCGGCAGTTCTCCTTCCCCGGCGGCATTCCGAGCCACGCGGCGCCGGAGACG CCGGGCTCGATCCACGAAGGCGGCGAGCTCGGCTACGCCCTGGTCCATGCCTATGGCGCAGCGTTCGACAATCCCGACCT GATCGTCGCCTGCGTCGTCGGCGACGGCGAAGCCGAGACTGGTCCGCTCGCCGCATCCTGGCATTCGAACAAGTTCCTGA ACCCGGCGCATGACGGCGCGGTGCTGCCGATCCTGCATCTCAACGGCTACAAGATCGCCAACCCGACCGTGCTCGGCCGC ATGGGCGACGCCGAGATCAAGTGCCTGTTCGAGGGCTACGGCTACGCGCCGCTGTTCGTCGCAGGCGACGAGCCCGAGGC GATGCACCGGCAGATGGCGGACGCGCTCGACGTGGCGCTCGCGAGCATCCGCTCGATCCGGCAGAACGCGCGCCAGCCGG ATGCGGCGATCCAGCGCCCGCGCTGGCCGATGATCATCCTGCGCAGCCCGAAGGGCTGGACCGGACCGAAGGAGGTCGAC GGCCTCAAGGTCGAAGGCTTCTGGCGCGCCCATCAGGTCCCGATCGCCAATCCGCGCGGCAAGCCGGAGCATCTCGCTTT GCTCGAAGCCTGGATGAAGAGCTATCAGCCGGAGACGCTGTTCGACGCGCAGGGCCGGCTCGTGCCGGAGCTGCAGGCGC TCGCGCCCAAGGGCCGGCGGCGCATGGGCGCCAATCCGCATGCCAATGGCGGGCTGCTCAAGCGCGAGCTGAAGCTGCCG GACTATCGCGCCTTTGCGGTCGAGGTGCGCTCACCGGGCGAGACCATCGCCGAGGCAACGCGCGAGCTCGGCAAGTTTCT GCGCGAGGTGATCACGCTGAACGCGGATCATAAGAACTTCCGCATCATGGGCCCGGACGAGACCGCCTCGAACCGGCTCG ACGCAGTGTTCGAGGTCACCGAACGAGTCTGGATGGAAGGCATCGAGCCCTATGATGTCCATCTCGCGCATAATGGCCGT GTCATGGAGGTGTTGAGCGAGCATCTCTGCCAGGGCTGGCTCGAAGGCTATCTGCTCACGGGCCGCCATGGCGTGTTCTC CTGCTACGAGGCCTTCATCCACATCATCGATTCGATGTTCAATCAGCACGCCAAATGGCTGAAAGTATCGCGCCATCTGC CATGGCGGCGACCGATCGCCTCGCTGAATTATCTCCTCACCTCGCATGTGTGGCGGCAGGACCATAACGGCTTCAGCCAC CAGGACCCCGGCTTCGTCGACCTTGTCGCCAACAAGAAGGCCGACATCGTCCGCATCTACTTTCCGCCCGATGCGAATAC GCTGTTGTGGATATCAGACCACTGCCTGCGCACCTACAATCGCATCAACGTCATCGTCGCCGGCAAGCAGCCGTCGCCGC AATGGCTCTCGATGCCGGAAGCGGCCGTGCATTGCGACGCCGGCATCGGCATCTGGCCGTGGGCCGGCACCGAGCGCGGC GGCGCGGAGCCGGATGTCGTGATGGCCTGCGCCGGCGACATTCCGACGATCGAGACACTGGCGGCGGTCGACCTGCTGCG CAGGGCGCTCCCAGACTTGAGGATCCGCGTCGTCAACGTCGTCGATCTCATGACCCTGCAGCCCGACACCGAGCATCCGC ATGGCCTCAGCGACCGCGACTTCGACAGCCTGTTCACGACCAGCAAGCCGGTGATCTTCGCCTATCACGGCTATCCGCAC CTGATCCATCGCCTGACCTACAGCCGCGCCAACCATGCCGGCATGCATGTGCGCGGCTTCATCGAGGAAGGCACCACAAC GACGCCGTTCGACATGGTCGTGCTGAACGAACTCGATCGTTTCCATCTCGCGATCGAGGTGATCGAGCGCGTGCCCGGGC TCAGCGTCTCGGCCGCCCAGGTGAAGCAGAGCTTCCGCGACGCGCTGATCGCGCATGCGCGCTACGTGCGCGAGCATGGC GAGGACATGCCGGAGGTCCGCGACTGGATCTGGCCAAACAGCGCAGGCGGGACGACGCCGGCCCAGGCGGCGGATTGA
Upstream 100 bases:
>100_bases TAACAAGAATAAAATAGAACGAAGGCTCAGACGCGGATCTGAGCGCGCGCAAGGTCAGCCATCACATTCCCGTTCTATCC TCAGGACGCGCTGGAACGGG
Downstream 100 bases:
>100_bases CACGTCTGGAGGTTCCGGCGAGGCCGAGTTCACCCATCGTGCATTGCCCGAACGGCGTTCCCGGGGCCTGCTGCAAAATT CCGCAGTGCAGCGGGCTGAT
Product: putative phosphoketolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 825; Mature: 825
Protein sequence:
>825_residues MVLRYSPVRSRRREAEGKRGPMQSSPHPTSPADDLDLLDRYWRAANYLSVGQIYLLDNPLLREPLKPEHIKPRLLGHWGT TPGLNFIYAHLNRAIAAQDLDVIYVCGPGHGGPGMVANTYLEGSYTEFYPDITRDVDGLRKLFRQFSFPGGIPSHAAPET PGSIHEGGELGYALVHAYGAAFDNPDLIVACVVGDGEAETGPLAASWHSNKFLNPAHDGAVLPILHLNGYKIANPTVLGR MGDAEIKCLFEGYGYAPLFVAGDEPEAMHRQMADALDVALASIRSIRQNARQPDAAIQRPRWPMIILRSPKGWTGPKEVD GLKVEGFWRAHQVPIANPRGKPEHLALLEAWMKSYQPETLFDAQGRLVPELQALAPKGRRRMGANPHANGGLLKRELKLP DYRAFAVEVRSPGETIAEATRELGKFLREVITLNADHKNFRIMGPDETASNRLDAVFEVTERVWMEGIEPYDVHLAHNGR VMEVLSEHLCQGWLEGYLLTGRHGVFSCYEAFIHIIDSMFNQHAKWLKVSRHLPWRRPIASLNYLLTSHVWRQDHNGFSH QDPGFVDLVANKKADIVRIYFPPDANTLLWISDHCLRTYNRINVIVAGKQPSPQWLSMPEAAVHCDAGIGIWPWAGTERG GAEPDVVMACAGDIPTIETLAAVDLLRRALPDLRIRVVNVVDLMTLQPDTEHPHGLSDRDFDSLFTTSKPVIFAYHGYPH LIHRLTYSRANHAGMHVRGFIEEGTTTTPFDMVVLNELDRFHLAIEVIERVPGLSVSAAQVKQSFRDALIAHARYVREHG EDMPEVRDWIWPNSAGGTTPAQAAD
Sequences:
>Translated_825_residues MVLRYSPVRSRRREAEGKRGPMQSSPHPTSPADDLDLLDRYWRAANYLSVGQIYLLDNPLLREPLKPEHIKPRLLGHWGT TPGLNFIYAHLNRAIAAQDLDVIYVCGPGHGGPGMVANTYLEGSYTEFYPDITRDVDGLRKLFRQFSFPGGIPSHAAPET PGSIHEGGELGYALVHAYGAAFDNPDLIVACVVGDGEAETGPLAASWHSNKFLNPAHDGAVLPILHLNGYKIANPTVLGR MGDAEIKCLFEGYGYAPLFVAGDEPEAMHRQMADALDVALASIRSIRQNARQPDAAIQRPRWPMIILRSPKGWTGPKEVD GLKVEGFWRAHQVPIANPRGKPEHLALLEAWMKSYQPETLFDAQGRLVPELQALAPKGRRRMGANPHANGGLLKRELKLP DYRAFAVEVRSPGETIAEATRELGKFLREVITLNADHKNFRIMGPDETASNRLDAVFEVTERVWMEGIEPYDVHLAHNGR VMEVLSEHLCQGWLEGYLLTGRHGVFSCYEAFIHIIDSMFNQHAKWLKVSRHLPWRRPIASLNYLLTSHVWRQDHNGFSH QDPGFVDLVANKKADIVRIYFPPDANTLLWISDHCLRTYNRINVIVAGKQPSPQWLSMPEAAVHCDAGIGIWPWAGTERG GAEPDVVMACAGDIPTIETLAAVDLLRRALPDLRIRVVNVVDLMTLQPDTEHPHGLSDRDFDSLFTTSKPVIFAYHGYPH LIHRLTYSRANHAGMHVRGFIEEGTTTTPFDMVVLNELDRFHLAIEVIERVPGLSVSAAQVKQSFRDALIAHARYVREHG EDMPEVRDWIWPNSAGGTTPAQAAD >Mature_825_residues MVLRYSPVRSRRREAEGKRGPMQSSPHPTSPADDLDLLDRYWRAANYLSVGQIYLLDNPLLREPLKPEHIKPRLLGHWGT TPGLNFIYAHLNRAIAAQDLDVIYVCGPGHGGPGMVANTYLEGSYTEFYPDITRDVDGLRKLFRQFSFPGGIPSHAAPET PGSIHEGGELGYALVHAYGAAFDNPDLIVACVVGDGEAETGPLAASWHSNKFLNPAHDGAVLPILHLNGYKIANPTVLGR MGDAEIKCLFEGYGYAPLFVAGDEPEAMHRQMADALDVALASIRSIRQNARQPDAAIQRPRWPMIILRSPKGWTGPKEVD GLKVEGFWRAHQVPIANPRGKPEHLALLEAWMKSYQPETLFDAQGRLVPELQALAPKGRRRMGANPHANGGLLKRELKLP DYRAFAVEVRSPGETIAEATRELGKFLREVITLNADHKNFRIMGPDETASNRLDAVFEVTERVWMEGIEPYDVHLAHNGR VMEVLSEHLCQGWLEGYLLTGRHGVFSCYEAFIHIIDSMFNQHAKWLKVSRHLPWRRPIASLNYLLTSHVWRQDHNGFSH QDPGFVDLVANKKADIVRIYFPPDANTLLWISDHCLRTYNRINVIVAGKQPSPQWLSMPEAAVHCDAGIGIWPWAGTERG GAEPDVVMACAGDIPTIETLAAVDLLRRALPDLRIRVVNVVDLMTLQPDTEHPHGLSDRDFDSLFTTSKPVIFAYHGYPH LIHRLTYSRANHAGMHVRGFIEEGTTTTPFDMVVLNELDRFHLAIEVIERVPGLSVSAAQVKQSFRDALIAHARYVREHG EDMPEVRDWIWPNSAGGTTPAQAAD
Specific function: Unknown
COG id: COG3957
COG function: function code G; Phosphoketolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the XFP family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009014 - InterPro: IPR005593 - InterPro: IPR018969 - InterPro: IPR019790 - InterPro: IPR018970 - InterPro: IPR019789 [H]
Pfam domain/function: PF03894 XFP; PF09363 XFP_C; PF09364 XFP_N [H]
EC number: NA
Molecular weight: Translated: 92082; Mature: 92082
Theoretical pI: Translated: 6.74; Mature: 6.74
Prosite motif: PS60002 PHOSPHOKETOLASE_1 ; PS60003 PHOSPHOKETOLASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVLRYSPVRSRRREAEGKRGPMQSSPHPTSPADDLDLLDRYWRAANYLSVGQIYLLDNPL CCEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCHH LREPLKPEHIKPRLLGHWGTTPGLNFIYAHLNRAIAAQDLDVIYVCGPGHGGPGMVANTY HHCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEE LEGSYTEFYPDITRDVDGLRKLFRQFSFPGGIPSHAAPETPGSIHEGGELGYALVHAYGA ECCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC AFDNPDLIVACVVGDGEAETGPLAASWHSNKFLNPAHDGAVLPILHLNGYKIANPTVLGR CCCCCCEEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCEEEEEEECCEEECCCEEEEC MGDAEIKCLFEGYGYAPLFVAGDEPEAMHRQMADALDVALASIRSIRQNARQPDAAIQRP CCCCEEEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCC RWPMIILRSPKGWTGPKEVDGLKVEGFWRAHQVPIANPRGKPEHLALLEAWMKSYQPETL CCCEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEE FDAQGRLVPELQALAPKGRRRMGANPHANGGLLKRELKLPDYRAFAVEVRSPGETIAEAT ECCCCCCCHHHHHHCCCHHHHCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCHHHHHHH RELGKFLREVITLNADHKNFRIMGPDETASNRLDAVFEVTERVWMEGIEPYDVHLAHNGR HHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCH VMEVLSEHLCQGWLEGYLLTGRHGVFSCYEAFIHIIDSMFNQHAKWLKVSRHLPWRRPIA HHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH SLNYLLTSHVWRQDHNGFSHQDPGFVDLVANKKADIVRIYFPPDANTLLWISDHCLRTYN HHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEEEECHHHHHHHC RINVIVAGKQPSPQWLSMPEAAVHCDAGIGIWPWAGTERGGAEPDVVMACAGDIPTIETL EEEEEEECCCCCCHHHCCCCHHEEECCCCEECCCCCCCCCCCCCCEEEEECCCCCHHHHH AAVDLLRRALPDLRIRVVNVVDLMTLQPDTEHPHGLSDRDFDSLFTTSKPVIFAYHGYPH HHHHHHHHHCCHHEEEEEEHHHHEEECCCCCCCCCCCCCCHHHHHCCCCCEEEEECCCHH LIHRLTYSRANHAGMHVRGFIEEGTTTTPFDMVVLNELDRFHLAIEVIERVPGLSVSAAQ HHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH VKQSFRDALIAHARYVREHGEDMPEVRDWIWPNSAGGTTPAQAAD HHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCC >Mature Secondary Structure MVLRYSPVRSRRREAEGKRGPMQSSPHPTSPADDLDLLDRYWRAANYLSVGQIYLLDNPL CCEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCHH LREPLKPEHIKPRLLGHWGTTPGLNFIYAHLNRAIAAQDLDVIYVCGPGHGGPGMVANTY HHCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEE LEGSYTEFYPDITRDVDGLRKLFRQFSFPGGIPSHAAPETPGSIHEGGELGYALVHAYGA ECCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHC AFDNPDLIVACVVGDGEAETGPLAASWHSNKFLNPAHDGAVLPILHLNGYKIANPTVLGR CCCCCCEEEEEEECCCCCCCCCEEECCCCCCCCCCCCCCCEEEEEEECCEEECCCEEEEC MGDAEIKCLFEGYGYAPLFVAGDEPEAMHRQMADALDVALASIRSIRQNARQPDAAIQRP CCCCEEEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCC RWPMIILRSPKGWTGPKEVDGLKVEGFWRAHQVPIANPRGKPEHLALLEAWMKSYQPETL CCCEEEEECCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEE FDAQGRLVPELQALAPKGRRRMGANPHANGGLLKRELKLPDYRAFAVEVRSPGETIAEAT ECCCCCCCHHHHHHCCCHHHHCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCHHHHHHH RELGKFLREVITLNADHKNFRIMGPDETASNRLDAVFEVTERVWMEGIEPYDVHLAHNGR HHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCH VMEVLSEHLCQGWLEGYLLTGRHGVFSCYEAFIHIIDSMFNQHAKWLKVSRHLPWRRPIA HHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH SLNYLLTSHVWRQDHNGFSHQDPGFVDLVANKKADIVRIYFPPDANTLLWISDHCLRTYN HHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEEEECHHHHHHHC RINVIVAGKQPSPQWLSMPEAAVHCDAGIGIWPWAGTERGGAEPDVVMACAGDIPTIETL EEEEEEECCCCCCHHHCCCCHHEEECCCCEECCCCCCCCCCCCCCEEEEECCCCCHHHHH AAVDLLRRALPDLRIRVVNVVDLMTLQPDTEHPHGLSDRDFDSLFTTSKPVIFAYHGYPH HHHHHHHHHCCHHEEEEEEHHHHEEECCCCCCCCCCCCCCHHHHHCCCCCEEEEECCCHH LIHRLTYSRANHAGMHVRGFIEEGTTTTPFDMVVLNELDRFHLAIEVIERVPGLSVSAAQ HHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH VKQSFRDALIAHARYVREHGEDMPEVRDWIWPNSAGGTTPAQAAD HHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12597275 [H]