| Definition | Bradyrhizobium sp. ORS278 chromosome, complete genome. |
|---|---|
| Accession | NC_009445 |
| Length | 7,456,587 |
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The map label for this gene is ilvD [H]
Identifier: 146338873
GI number: 146338873
Start: 1936965
End: 1938638
Strand: Direct
Name: ilvD [H]
Synonym: BRADO1812
Alternate gene names: 146338873
Gene position: 1936965-1938638 (Clockwise)
Preceding gene: 146338872
Following gene: 146338874
Centisome position: 25.98
GC content: 67.03
Gene sequence:
>1674_bases ATGGGCTTCTATTATCGCTCGTTCCTCAAGAACAGCGGCACGCCGCAGGATCGATTCGAAGGCCGTCCGGTCATCGGCAT CTGCAACACCTGGTCGGAGCTGACGCCCTGCAACGCGCATTTCCGTGTCATCGCCGAGCACGTCCGCCAGGGCGTGCTCG ATGCCGGCGGGTACCCACTCGAATTCCCGGTCTCCTCGCTCGGCGAGGTGACGATGCGCCCGACCGCGATGCTGTTCCGC AACCTCGCCTCGATGGATGTCGAGGAGGCGATCCGCGCGCATCCGCTGGACGGCGTCGTGCTGTTGATGGGCTGTGACAA GACCACGCCGGCGCTGTTGATGGGCGCGGCCTCGGCCGACCTGCCGGCGATCGGCGTCTCCGGCGGGCCGCAGTTGCGCG GCGTTTATCGCGGCCAGATCATCGGCTCCGGCACCAACATCATCTCGATGAGCGAGCAACTGCGCGCCGGCGAGATCACC TTGAAGGAATTCCACGAGGCCGAGGCCGGCATGAACCGCTCCGCTGGCAGCTGCATGACCATGGGCACGGCCTCGACGAT GGCCTCGATGGTCGAGGCGCTCGGCATCGGCCTGCCGGAGAATGCCGCGATTCCCGCCGCCGACGCGCGCCGCAACCTGC TCGCGCGCATGGCCGGCCGGCGCATTGTCGAGATGGTTAACGAAGACCTCAAGCCGTCGGACATTCTCACCCGCCAAGCA TTCGAGAATGCGATCCGCACGCTGGCCGCGATCGGCGGCTCGACCAATGCGGTCGTGCACCTGCTCGCAATCGCGGGCCG CGTCGGCGTCGAGCTTTCGCTGGACGATTTCGACCGGCTGTGCCGCGACGTGCACTGCCTCGTCGATCTGATGCCGTCGG GCCGCTTCCTGATGGAGGATTTCTACTACGCCGGCGGTCTGCCGGCGGTGCTGCGCGCGCTCGGCGAGCGCGGCCTGCTG CACAAGGACGCGCGCACGGTCAACGGCAAGACGCTGTGGGAGAACGTCTCCGAAGCGCCGAACTACAATGCCGAGGTGAT CACGCCGTTCGAGACGCCGTTCAAGACCGAGGCCGGCATCGCGATCCTCACCGGCAACCTCGCGCCGAACGGCGCGGTCA TCAAGCCGTCGGCGGCCTCGCCGGAGCTGATGAACCACACGGGACGCGCGGTGGTGTTCGAGAGCGTCGAGGAGATGCAT GACGCTGTTGACGACGACACTCTCGACATCGACGCCTCCTGCATCATGGTGCTGAAGAACTGCGGGCCGAAGGGCTATCC GGGCATGGCCGAGGTCGGCAACATGCCGCTGCCTGCAAAAGTGCTGCGCCAGGGTGTGCGCGACATGATCCGCATTTCAG ACGCGCGGATGTCCGGCACTGCCTACGGGACGGTGGTGCTGCATGTCGCACCGGAGGCCACCGTCGGCGGACCGCTGGCG CTGGTGAAGAACGGCGACATGATCACGCTCGACGTGCCCGGCCGTCGGCTGCATCTGCATGTCAGCGACGAGGAGCTGGC CGCGCGCCGCGCCGCCTGGACGCCGCCGAAGCCGCACGCGGAGCGGGGCTATCAGAAGCTCTACATCGATCACGTGCTGC AGGCCGATCGCGGCGTGGATTTCGACTTCCTGGTCGGCCGCACCGGCTCGCCGGTGCCGCGCGACAATCACTAA
Upstream 100 bases:
>100_bases GGCGTCATGCGCAGTCGGCTGCACGAACGGACCAGGAATGAGCAACGACAAGTCAGACAAGCAGCTGCGCAGCCAGGCGT GGTTCGGCCGCCAGGACAAG
Downstream 100 bases:
>100_bases GAGGTGCCCATGACCGCTTCATCCAGAAAGCTTTACAAGGGCGTCTTCCCGGTCGCGCCGACCATCTTCGACGCCGACGG CCGTCTCGACCTCGAGGGCC
Product: dihydroxy-acid dehydratase
Products: NA
Alternate protein names: DAD [H]
Number of amino acids: Translated: 557; Mature: 556
Protein sequence:
>557_residues MGFYYRSFLKNSGTPQDRFEGRPVIGICNTWSELTPCNAHFRVIAEHVRQGVLDAGGYPLEFPVSSLGEVTMRPTAMLFR NLASMDVEEAIRAHPLDGVVLLMGCDKTTPALLMGAASADLPAIGVSGGPQLRGVYRGQIIGSGTNIISMSEQLRAGEIT LKEFHEAEAGMNRSAGSCMTMGTASTMASMVEALGIGLPENAAIPAADARRNLLARMAGRRIVEMVNEDLKPSDILTRQA FENAIRTLAAIGGSTNAVVHLLAIAGRVGVELSLDDFDRLCRDVHCLVDLMPSGRFLMEDFYYAGGLPAVLRALGERGLL HKDARTVNGKTLWENVSEAPNYNAEVITPFETPFKTEAGIAILTGNLAPNGAVIKPSAASPELMNHTGRAVVFESVEEMH DAVDDDTLDIDASCIMVLKNCGPKGYPGMAEVGNMPLPAKVLRQGVRDMIRISDARMSGTAYGTVVLHVAPEATVGGPLA LVKNGDMITLDVPGRRLHLHVSDEELAARRAAWTPPKPHAERGYQKLYIDHVLQADRGVDFDFLVGRTGSPVPRDNH
Sequences:
>Translated_557_residues MGFYYRSFLKNSGTPQDRFEGRPVIGICNTWSELTPCNAHFRVIAEHVRQGVLDAGGYPLEFPVSSLGEVTMRPTAMLFR NLASMDVEEAIRAHPLDGVVLLMGCDKTTPALLMGAASADLPAIGVSGGPQLRGVYRGQIIGSGTNIISMSEQLRAGEIT LKEFHEAEAGMNRSAGSCMTMGTASTMASMVEALGIGLPENAAIPAADARRNLLARMAGRRIVEMVNEDLKPSDILTRQA FENAIRTLAAIGGSTNAVVHLLAIAGRVGVELSLDDFDRLCRDVHCLVDLMPSGRFLMEDFYYAGGLPAVLRALGERGLL HKDARTVNGKTLWENVSEAPNYNAEVITPFETPFKTEAGIAILTGNLAPNGAVIKPSAASPELMNHTGRAVVFESVEEMH DAVDDDTLDIDASCIMVLKNCGPKGYPGMAEVGNMPLPAKVLRQGVRDMIRISDARMSGTAYGTVVLHVAPEATVGGPLA LVKNGDMITLDVPGRRLHLHVSDEELAARRAAWTPPKPHAERGYQKLYIDHVLQADRGVDFDFLVGRTGSPVPRDNH >Mature_556_residues GFYYRSFLKNSGTPQDRFEGRPVIGICNTWSELTPCNAHFRVIAEHVRQGVLDAGGYPLEFPVSSLGEVTMRPTAMLFRN LASMDVEEAIRAHPLDGVVLLMGCDKTTPALLMGAASADLPAIGVSGGPQLRGVYRGQIIGSGTNIISMSEQLRAGEITL KEFHEAEAGMNRSAGSCMTMGTASTMASMVEALGIGLPENAAIPAADARRNLLARMAGRRIVEMVNEDLKPSDILTRQAF ENAIRTLAAIGGSTNAVVHLLAIAGRVGVELSLDDFDRLCRDVHCLVDLMPSGRFLMEDFYYAGGLPAVLRALGERGLLH KDARTVNGKTLWENVSEAPNYNAEVITPFETPFKTEAGIAILTGNLAPNGAVIKPSAASPELMNHTGRAVVFESVEEMHD AVDDDTLDIDASCIMVLKNCGPKGYPGMAEVGNMPLPAKVLRQGVRDMIRISDARMSGTAYGTVVLHVAPEATVGGPLAL VKNGDMITLDVPGRRLHLHVSDEELAARRAAWTPPKPHAERGYQKLYIDHVLQADRGVDFDFLVGRTGSPVPRDNH
Specific function: Valine and isoleucine biosynthesis; fourth step. [C]
COG id: COG0129
COG function: function code EG; Dihydroxyacid dehydratase/phosphogluconate dehydratase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ilvD/edd family [H]
Homologues:
Organism=Escherichia coli, GI48994964, Length=598, Percent_Identity=30.9364548494983, Blast_Score=259, Evalue=2e-70, Organism=Escherichia coli, GI1788157, Length=516, Percent_Identity=31.0077519379845, Blast_Score=194, Evalue=1e-50, Organism=Escherichia coli, GI2367371, Length=475, Percent_Identity=31.3684210526316, Blast_Score=184, Evalue=1e-47, Organism=Escherichia coli, GI1786464, Length=450, Percent_Identity=33.5555555555556, Blast_Score=172, Evalue=3e-44, Organism=Saccharomyces cerevisiae, GI6322476, Length=552, Percent_Identity=32.4275362318841, Blast_Score=278, Evalue=2e-75,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015928 - InterPro: IPR004404 - InterPro: IPR000581 - InterPro: IPR020558 [H]
Pfam domain/function: PF00920 ILVD_EDD [H]
EC number: =4.2.1.9 [H]
Molecular weight: Translated: 59900; Mature: 59768
Theoretical pI: Translated: 5.88; Mature: 5.88
Prosite motif: PS00886 ILVD_EDD_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGFYYRSFLKNSGTPQDRFEGRPVIGICNTWSELTPCNAHFRVIAEHVRQGVLDAGGYPL CCHHHHHHHHCCCCCHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC EFPVSSLGEVTMRPTAMLFRNLASMDVEEAIRAHPLDGVVLLMGCDKTTPALLMGAASAD CCCHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHCCCCCEEEEEECCCCCHHHEEECCCCC LPAIGVSGGPQLRGVYRGQIIGSGTNIISMSEQLRAGEITLKEFHEAEAGMNRSAGSCMT CCEEECCCCCCCCEEEECEEEECCCCEEEHHHHHCCCCCHHHHHHHHHCCCCCCCCCEEE MGTASTMASMVEALGIGLPENAAIPAADARRNLLARMAGRRIVEMVNEDLKPSDILTRQA CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH FENAIRTLAAIGGSTNAVVHLLAIAGRVGVELSLDDFDRLCRDVHCLVDLMPSGRFLMED HHHHHHHHHHHCCCHHHHHHHHHHHHHCCEEECHHHHHHHHHHHHHHHHHCCCCHHHHHH FYYAGGLPAVLRALGERGLLHKDARTVNGKTLWENVSEAPNYNAEVITPFETPFKTEAGI HHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCCCE AILTGNLAPNGAVIKPSAASPELMNHTGRAVVFESVEEMHDAVDDDTLDIDASCIMVLKN EEEECCCCCCCCEECCCCCCCHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH CGPKGYPGMAEVGNMPLPAKVLRQGVRDMIRISDARMSGTAYGTVVLHVAPEATVGGPLA CCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCEE LVKNGDMITLDVPGRRLHLHVSDEELAARRAAWTPPKPHAERGYQKLYIDHVLQADRGVD EEECCCEEEEECCCCEEEEEECHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC FDFLVGRTGSPVPRDNH EEEEECCCCCCCCCCCC >Mature Secondary Structure GFYYRSFLKNSGTPQDRFEGRPVIGICNTWSELTPCNAHFRVIAEHVRQGVLDAGGYPL CHHHHHHHHCCCCCHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC EFPVSSLGEVTMRPTAMLFRNLASMDVEEAIRAHPLDGVVLLMGCDKTTPALLMGAASAD CCCHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHCCCCCEEEEEECCCCCHHHEEECCCCC LPAIGVSGGPQLRGVYRGQIIGSGTNIISMSEQLRAGEITLKEFHEAEAGMNRSAGSCMT CCEEECCCCCCCCEEEECEEEECCCCEEEHHHHHCCCCCHHHHHHHHHCCCCCCCCCEEE MGTASTMASMVEALGIGLPENAAIPAADARRNLLARMAGRRIVEMVNEDLKPSDILTRQA CCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH FENAIRTLAAIGGSTNAVVHLLAIAGRVGVELSLDDFDRLCRDVHCLVDLMPSGRFLMED HHHHHHHHHHHCCCHHHHHHHHHHHHHCCEEECHHHHHHHHHHHHHHHHHCCCCHHHHHH FYYAGGLPAVLRALGERGLLHKDARTVNGKTLWENVSEAPNYNAEVITPFETPFKTEAGI HHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCCCCE AILTGNLAPNGAVIKPSAASPELMNHTGRAVVFESVEEMHDAVDDDTLDIDASCIMVLKN EEEECCCCCCCCEECCCCCCCHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH CGPKGYPGMAEVGNMPLPAKVLRQGVRDMIRISDARMSGTAYGTVVLHVAPEATVGGPLA CCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCEE LVKNGDMITLDVPGRRLHLHVSDEELAARRAAWTPPKPHAERGYQKLYIDHVLQADRGVD EEECCCEEEEECCCCEEEEEECHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC FDFLVGRTGSPVPRDNH EEEEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA