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The map label for this gene is ddpC [H]

Identifier: 146338860

GI number: 146338860

Start: 1921478

End: 1922338

Strand: Direct

Name: ddpC [H]

Synonym: BRADO1799

Alternate gene names: 146338860

Gene position: 1921478-1922338 (Clockwise)

Preceding gene: 146338859

Following gene: 146338861

Centisome position: 25.77

GC content: 68.29

Gene sequence:

>861_bases
ATGACCACGATGGAGACGTCATCGACCTTGCGCCATACCGCTTTCGTGCTGCGCGGCAATCCGGTCACGGCGATCGCGGC
CGCCGGCGCGCTGCTGCTGGCGCTGATGGCAATAGCAGCGCCGTGGCTCGCGCCCTACGATCCCATCGCCTCCGACGTGC
CAGCGGCGCTGCAGCCGCCGAGCGCGGCGCACTGGTTCGGTACCGATCAGCTCGGGCGTGACGTGCTGAGCCGCCTGATC
GTGGCGAGCCGGCTCGATCTCACCATCGCCGTGACGGCTGTCGCGGTGTCCTTCGCGATCGGCTCCGTCATCGGCGCGCT
GTGCGGCTATACCGGCGGCCGGCTCGACAAGGCGGTCGGGCGCTTCGTCGACGTGCTGATGGCGTTCCCGCTGTTCGTGC
TGGCAATGGCGATGGTTGCCGCGCTCGGCAACCGCGTCGAGAACATCGTGATCGCGACCGCGATCATCAACCTGCCGTTC
TACATCCGCTTCGCGCGAGCCGAGGTGAACATCCGCCGCAACCTCGGCTGGGTCGAGGCCGCGCGTGCCTGCGGCGAAAG
CCACGTCGCCGTGGTGCTGCGCTTCCTGCTGCCGAACGTGCTGCCGGCGATGGCGGTTCAGATGTCGCTCAATCTCGGCT
GGGCGATCCTCAATGCCGCGGGCCTCTCCTTCATCGGCCTCGGCGTCAAGCCGCCGACGCCGGAGTGGGGCATCATGGTC
GCCGAGGGCGCGCGCTTCATCTCGACGGGGCGGTGGTGGCTGGTGGCGTTCCCGGGCTTGGCACTCATGAGTGCTGTGCT
GTGCTTCAACCTGCTCGGCGATGGCCTGCGCGATATCCTCGATCCCCGGATGCGCACATGA

Upstream 100 bases:

>100_bases
AGGGCTTCGTTCTGCTGATGGCGACGATCTTCGTGATCGTCAATCTGCTGGTCGATCTGCTCTACGGCATGGCCGATCCC
CGCGCGACGGTGGCATGAGC

Downstream 100 bases:

>100_bases
CGCCGGATGTGAGAATGAACGAGCGTGGCGCATCCGAGGATGCGCACCTGATCGCGCCGTTGTTGGAAGTCGAAAACCTC
AAGGTCGCCTTCTCCACGCG

Product: peptide ABC transporter membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 285

Protein sequence:

>286_residues
MTTMETSSTLRHTAFVLRGNPVTAIAAAGALLLALMAIAAPWLAPYDPIASDVPAALQPPSAAHWFGTDQLGRDVLSRLI
VASRLDLTIAVTAVAVSFAIGSVIGALCGYTGGRLDKAVGRFVDVLMAFPLFVLAMAMVAALGNRVENIVIATAIINLPF
YIRFARAEVNIRRNLGWVEAARACGESHVAVVLRFLLPNVLPAMAVQMSLNLGWAILNAAGLSFIGLGVKPPTPEWGIMV
AEGARFISTGRWWLVAFPGLALMSAVLCFNLLGDGLRDILDPRMRT

Sequences:

>Translated_286_residues
MTTMETSSTLRHTAFVLRGNPVTAIAAAGALLLALMAIAAPWLAPYDPIASDVPAALQPPSAAHWFGTDQLGRDVLSRLI
VASRLDLTIAVTAVAVSFAIGSVIGALCGYTGGRLDKAVGRFVDVLMAFPLFVLAMAMVAALGNRVENIVIATAIINLPF
YIRFARAEVNIRRNLGWVEAARACGESHVAVVLRFLLPNVLPAMAVQMSLNLGWAILNAAGLSFIGLGVKPPTPEWGIMV
AEGARFISTGRWWLVAFPGLALMSAVLCFNLLGDGLRDILDPRMRT
>Mature_285_residues
TTMETSSTLRHTAFVLRGNPVTAIAAAGALLLALMAIAAPWLAPYDPIASDVPAALQPPSAAHWFGTDQLGRDVLSRLIV
ASRLDLTIAVTAVAVSFAIGSVIGALCGYTGGRLDKAVGRFVDVLMAFPLFVLAMAMVAALGNRVENIVIATAIINLPFY
IRFARAEVNIRRNLGWVEAARACGESHVAVVLRFLLPNVLPAMAVQMSLNLGWAILNAAGLSFIGLGVKPPTPEWGIMVA
EGARFISTGRWWLVAFPGLALMSAVLCFNLLGDGLRDILDPRMRT

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=292, Percent_Identity=43.8356164383562, Blast_Score=240, Evalue=7e-65,
Organism=Escherichia coli, GI1787054, Length=270, Percent_Identity=42.2222222222222, Blast_Score=204, Evalue=7e-54,
Organism=Escherichia coli, GI1789889, Length=247, Percent_Identity=41.7004048582996, Blast_Score=188, Evalue=3e-49,
Organism=Escherichia coli, GI1789964, Length=258, Percent_Identity=41.8604651162791, Blast_Score=181, Evalue=7e-47,
Organism=Escherichia coli, GI1787498, Length=257, Percent_Identity=33.852140077821, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI1787549, Length=251, Percent_Identity=33.0677290836653, Blast_Score=118, Evalue=3e-28,
Organism=Escherichia coli, GI1788505, Length=226, Percent_Identity=28.3185840707965, Blast_Score=100, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30389; Mature: 30258

Theoretical pI: Translated: 9.35; Mature: 9.35

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTMETSSTLRHTAFVLRGNPVTAIAAAGALLLALMAIAAPWLAPYDPIASDVPAALQPP
CCCCCCHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
SAAHWFGTDQLGRDVLSRLIVASRLDLTIAVTAVAVSFAIGSVIGALCGYTGGRLDKAVG
CCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
RFVDVLMAFPLFVLAMAMVAALGNRVENIVIATAIINLPFYIRFARAEVNIRRNLGWVEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEHHHHHHHHHCCCHHHH
ARACGESHVAVVLRFLLPNVLPAMAVQMSLNLGWAILNAAGLSFIGLGVKPPTPEWGIMV
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHEECCCCCCCCCCCEEE
AEGARFISTGRWWLVAFPGLALMSAVLCFNLLGDGLRDILDPRMRT
ECCCEEHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TTMETSSTLRHTAFVLRGNPVTAIAAAGALLLALMAIAAPWLAPYDPIASDVPAALQPP
CCCCCHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
SAAHWFGTDQLGRDVLSRLIVASRLDLTIAVTAVAVSFAIGSVIGALCGYTGGRLDKAVG
CCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
RFVDVLMAFPLFVLAMAMVAALGNRVENIVIATAIINLPFYIRFARAEVNIRRNLGWVEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEHHHHHHHHHCCCHHHH
ARACGESHVAVVLRFLLPNVLPAMAVQMSLNLGWAILNAAGLSFIGLGVKPPTPEWGIMV
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHEECCCCCCCCCCCEEE
AEGARFISTGRWWLVAFPGLALMSAVLCFNLLGDGLRDILDPRMRT
ECCCEEHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]