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The map label for this gene is dppB [H]

Identifier: 146338859

GI number: 146338859

Start: 1920444

End: 1921475

Strand: Direct

Name: dppB [H]

Synonym: BRADO1798

Alternate gene names: 146338859

Gene position: 1920444-1921475 (Clockwise)

Preceding gene: 146338858

Following gene: 146338860

Centisome position: 25.76

GC content: 66.76

Gene sequence:

>1032_bases
ATGGGCACGATCGGCGCAACTCTGCTGCGGGCGGGACGACGCTTCGTCTCGTCGCTGCCGGCGCTGTTCGGCGTGCTGGT
CTTCACCTTCCTGCTGATGCGCGTGCTGCCGGGCGACCCGGCCGTGTTCTTCGCCTCCGGGCCCAATGCCGGCAAGGAGG
AGATCGAGGTCATCCGCCGGCAGCTCGGGCTCGACAAGCCGCTGCCGAACCAGCTCGCGATCTATCTGACCGACGTCGCC
CGCGGCAATCTCGGCCGCTCGATGATGACCGGCCAGGCCGTGTCGAAGGATCTCAAGGAGCGGCTGCCGGCTTCGCTGGA
ACTGACCTTGACGGCGCTGCTGATCGCGCTGGTTTCGGCGGTGCCGCTCGGCGTCATCGCGGCGCTCAGGCCGGGCTCGC
TGGTCGATCACGGCGTGCGGCTGTTCTGCTCGCTCGGCGTCTGCGTGCCGACCTTCGTCTCGGGATTGCTGTTGATCTAC
GTGTTCTATTATCTGCTCGGCTTCGCACCGGATCCGACCGGGCGGATCGACATCTTCACCACGATGCCGCCGTCGCGCAC
CGGGTTCCTGATGATCGATTTCCTGCTCGCCGGCGATCTCGAGGGCTGGTCGGCGGCGGCGCGGCAGCTGATGCTGCCGG
CCTTCACCATGGCGCTGTTCGTGATCGCGCCGCTGGCGCGCATCACCCGCGCCTCGATGCTGGTCTCGCTCGGCAGCGAC
TTCGTGCGCACCGCCCGCTCGGTCGGGCTGTCATGGTGGCGCATCGTCGTCACCTATGCCCTGAGGAACGCGATCCTGCC
GGTCATCACCATCGCCGGCATCGTGTTCTCGACCATGCTCGGCGCGAATGTGCTGGTGGAAAAAGTGTTCTCCTGGCCGG
GCGTCGCCTCCTACGCGCTCGACGCGCTGCTGGTCTCGGACTACGCACCGGTGCAGGGCTTCGTTCTGCTGATGGCGACG
ATCTTCGTGATCGTCAATCTGCTGGTCGATCTGCTCTACGGCATGGCCGATCCCCGCGCGACGGTGGCATGA

Upstream 100 bases:

>100_bases
GCAATCCAACCTCTCCCCGCAGGCGGGGAGAGGTGATACCGAGCCGCAGCGGACTGGTGCGCCTCGCTGACGATGGATTG
TTTGAGGAGACGGAAGGCCC

Downstream 100 bases:

>100_bases
GCATGACCACGATGGAGACGTCATCGACCTTGCGCCATACCGCTTTCGTGCTGCGCGGCAATCCGGTCACGGCGATCGCG
GCCGCCGGCGCGCTGCTGCT

Product: oligopeptide ABC transporter membrane protein

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 343; Mature: 342

Protein sequence:

>343_residues
MGTIGATLLRAGRRFVSSLPALFGVLVFTFLLMRVLPGDPAVFFASGPNAGKEEIEVIRRQLGLDKPLPNQLAIYLTDVA
RGNLGRSMMTGQAVSKDLKERLPASLELTLTALLIALVSAVPLGVIAALRPGSLVDHGVRLFCSLGVCVPTFVSGLLLIY
VFYYLLGFAPDPTGRIDIFTTMPPSRTGFLMIDFLLAGDLEGWSAAARQLMLPAFTMALFVIAPLARITRASMLVSLGSD
FVRTARSVGLSWWRIVVTYALRNAILPVITIAGIVFSTMLGANVLVEKVFSWPGVASYALDALLVSDYAPVQGFVLLMAT
IFVIVNLLVDLLYGMADPRATVA

Sequences:

>Translated_343_residues
MGTIGATLLRAGRRFVSSLPALFGVLVFTFLLMRVLPGDPAVFFASGPNAGKEEIEVIRRQLGLDKPLPNQLAIYLTDVA
RGNLGRSMMTGQAVSKDLKERLPASLELTLTALLIALVSAVPLGVIAALRPGSLVDHGVRLFCSLGVCVPTFVSGLLLIY
VFYYLLGFAPDPTGRIDIFTTMPPSRTGFLMIDFLLAGDLEGWSAAARQLMLPAFTMALFVIAPLARITRASMLVSLGSD
FVRTARSVGLSWWRIVVTYALRNAILPVITIAGIVFSTMLGANVLVEKVFSWPGVASYALDALLVSDYAPVQGFVLLMAT
IFVIVNLLVDLLYGMADPRATVA
>Mature_342_residues
GTIGATLLRAGRRFVSSLPALFGVLVFTFLLMRVLPGDPAVFFASGPNAGKEEIEVIRRQLGLDKPLPNQLAIYLTDVAR
GNLGRSMMTGQAVSKDLKERLPASLELTLTALLIALVSAVPLGVIAALRPGSLVDHGVRLFCSLGVCVPTFVSGLLLIYV
FYYLLGFAPDPTGRIDIFTTMPPSRTGFLMIDFLLAGDLEGWSAAARQLMLPAFTMALFVIAPLARITRASMLVSLGSDF
VRTARSVGLSWWRIVVTYALRNAILPVITIAGIVFSTMLGANVLVEKVFSWPGVASYALDALLVSDYAPVQGFVLLMATI
FVIVNLLVDLLYGMADPRATVA

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=329, Percent_Identity=37.6899696048632, Blast_Score=220, Evalue=8e-59,
Organism=Escherichia coli, GI1787761, Length=296, Percent_Identity=40.2027027027027, Blast_Score=192, Evalue=2e-50,
Organism=Escherichia coli, GI1787053, Length=326, Percent_Identity=34.3558282208589, Blast_Score=192, Evalue=3e-50,
Organism=Escherichia coli, GI1789888, Length=329, Percent_Identity=34.3465045592705, Blast_Score=163, Evalue=1e-41,
Organism=Escherichia coli, GI1787497, Length=329, Percent_Identity=30.0911854103343, Blast_Score=147, Evalue=8e-37,
Organism=Escherichia coli, GI1787550, Length=274, Percent_Identity=32.1167883211679, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1788504, Length=365, Percent_Identity=25.2054794520548, Blast_Score=94, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36838; Mature: 36707

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTIGATLLRAGRRFVSSLPALFGVLVFTFLLMRVLPGDPAVFFASGPNAGKEEIEVIRR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHH
QLGLDKPLPNQLAIYLTDVARGNLGRSMMTGQAVSKDLKERLPASLELTLTALLIALVSA
HHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
VPLGVIAALRPGSLVDHGVRLFCSLGVCVPTFVSGLLLIYVFYYLLGFAPDPTGRIDIFT
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
TMPPSRTGFLMIDFLLAGDLEGWSAAARQLMLPAFTMALFVIAPLARITRASMLVSLGSD
CCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FVRTARSVGLSWWRIVVTYALRNAILPVITIAGIVFSTMLGANVLVEKVFSWPGVASYAL
HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
DALLVSDYAPVQGFVLLMATIFVIVNLLVDLLYGMADPRATVA
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
GTIGATLLRAGRRFVSSLPALFGVLVFTFLLMRVLPGDPAVFFASGPNAGKEEIEVIRR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHH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HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]