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The map label for this gene is sigK [H]

Identifier: 146338578

GI number: 146338578

Start: 1606958

End: 1607506

Strand: Direct

Name: sigK [H]

Synonym: BRADO1500

Alternate gene names: 146338578

Gene position: 1606958-1607506 (Clockwise)

Preceding gene: 146338577

Following gene: 146338579

Centisome position: 21.55

GC content: 65.21

Gene sequence:

>549_bases
ATGCTGACGCCGGCAGAGCTGGTCTGGCTGCTTGCCGCAGTTGCCAAGAGGGATGAGGCCGCGTTCGAGCGCCTCTACGC
GGCGACGCGCGCGAAACTCTATGGCGTCGTGCTCCGTATCTTGCACCGTCAGGACCTCGCCGAGGAGGTCGTGCAGGAGA
CCTATGTGAAGGTCTGGAACAACGCGGCCCAGTTCGATCCGGCGGTGTCTTCCCCCATTACCTGGATGGCCGCGATTGCC
CGCAACCGCGCCATCGACCTGGTGCGCAAGCGCGGCGAGCTGTCTTTGGAGGATGAGCCCTCCGCGCTGGAAGTCGCGGC
CGAGACGCCGGATCCGCTGGCGCGGCGCGAGATGTCGGAGGAGCTCAAGCGTCTCCTGGAATGCGTCGGGCGGCTCGAGC
CCGACCGCCAGAAGCTCGTGCTGCTTGCCTACTATAACGGCTGGAGCCGCGAGCAATTGGCGACCAAGTTCGAGGCGCCG
GTGAATACGGTGAAGACCTGGCTGCGGCGGAGCATGATGGATATCCGCCAATGCCTGGGGATCGGATGA

Upstream 100 bases:

>100_bases
GGTTTTTCGTCGCGCCCGCCCGGCTGGAGCGCCGCGCGCGATGTGTGCTACGGGAGGTCTGGTCCGAATGATGGAGTGGG
GCGATTTTCGGGGACGCTGA

Downstream 100 bases:

>100_bases
GAGGCGGCTTGGACTGAACGTGGACGATAGACCTTGTGGGTGACGTGACTTGGACCTGTGATGGCGTATAGCGAAGACCA
TATCGCGCTGGCGGCTGAGT

Product: RNA polymerase ECF-type sigma factor

Products: NA

Alternate protein names: Sigma-K factor [H]

Number of amino acids: Translated: 182; Mature: 182

Protein sequence:

>182_residues
MLTPAELVWLLAAVAKRDEAAFERLYAATRAKLYGVVLRILHRQDLAEEVVQETYVKVWNNAAQFDPAVSSPITWMAAIA
RNRAIDLVRKRGELSLEDEPSALEVAAETPDPLARREMSEELKRLLECVGRLEPDRQKLVLLAYYNGWSREQLATKFEAP
VNTVKTWLRRSMMDIRQCLGIG

Sequences:

>Translated_182_residues
MLTPAELVWLLAAVAKRDEAAFERLYAATRAKLYGVVLRILHRQDLAEEVVQETYVKVWNNAAQFDPAVSSPITWMAAIA
RNRAIDLVRKRGELSLEDEPSALEVAAETPDPLARREMSEELKRLLECVGRLEPDRQKLVLLAYYNGWSREQLATKFEAP
VNTVKTWLRRSMMDIRQCLGIG
>Mature_182_residues
MLTPAELVWLLAAVAKRDEAAFERLYAATRAKLYGVVLRILHRQDLAEEVVQETYVKVWNNAAQFDPAVSSPITWMAAIA
RNRAIDLVRKRGELSLEDEPSALEVAAETPDPLARREMSEELKRLLECVGRLEPDRQKLVLLAYYNGWSREQLATKFEAP
VNTVKTWLRRSMMDIRQCLGIG

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 20752; Mature: 20752

Theoretical pI: Translated: 7.27; Mature: 7.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTPAELVWLLAAVAKRDEAAFERLYAATRAKLYGVVLRILHRQDLAEEVVQETYVKVWN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NAAQFDPAVSSPITWMAAIARNRAIDLVRKRGELSLEDEPSALEVAAETPDPLARREMSE
CHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHEEECCCCCHHHHHHHHH
ELKRLLECVGRLEPDRQKLVLLAYYNGWSREQLATKFEAPVNTVKTWLRRSMMDIRQCLG
HHHHHHHHHHCCCCCHHHEEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHC
IG
CC
>Mature Secondary Structure
MLTPAELVWLLAAVAKRDEAAFERLYAATRAKLYGVVLRILHRQDLAEEVVQETYVKVWN
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
NAAQFDPAVSSPITWMAAIARNRAIDLVRKRGELSLEDEPSALEVAAETPDPLARREMSE
CHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHEEECCCCCHHHHHHHHH
ELKRLLECVGRLEPDRQKLVLLAYYNGWSREQLATKFEAPVNTVKTWLRRSMMDIRQCLG
HHHHHHHHHHCCCCCHHHEEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHC
IG
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA