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The map label for this gene is cph2 [H]

Identifier: 146338192

GI number: 146338192

Start: 1158337

End: 1159845

Strand: Reverse

Name: cph2 [H]

Synonym: BRADO1090

Alternate gene names: 146338192

Gene position: 1159845-1158337 (Counterclockwise)

Preceding gene: 146338200

Following gene: 146338190

Centisome position: 15.55

GC content: 68.72

Gene sequence:

>1509_bases
ATGCGCTGGATACGCCGAACAGGCAAGGCAAAACCGCCTTGGCGTCTCTCGGCCCGCACGCTCGTCACCTGCTCCATCTC
CACCATCATCGGCTTCTCGGCCATCTGCGCCAGCATGATGATCGACCTGCGCCGTGGCGAGGAGATCCGCGCCCGACAGT
CGCTGGAAAATCTCGCAGCCGGCATCGGCGCCGACATCAGCCGCAACATCGAGTTGTACGATCTGTCGCTGCGCGCGGTC
GGCGCCAACATGTTGCTGCCCGAAATCAACGAGGTCAGCAAGCCGATCCGCCAACTGATCCTGTTCGACCGCGCATCCAC
CGCGCGATATTTCGGCGCCATCCAGGTGTTCGACGCCAACGGTCGCCTCACCATCGACTCGGCCACGCTCGACCCGTCCC
CGGAGGACCGCGGCGACGCCGACTTCTTCCACGTCCAGCGCGACCGCGCCGATGTCGGCCTTCTTGTCAGCAGGCCGGCG
CAGCAGCGCGGGCACTATTCCATTGCTCTGAGCCGCCGCATTTCCGCGGCTGACGGTCGCTTCGTCGGCGTCGTCGCCGG
CTCGATCCGCCTCAGCTATTTCCGCGACCTGTTCAGCCGGCTGACGCTCCCCGCGGGTGTCGGCCTGACGGTGCTCGGGC
GCGACGGCACCGTCGTCGTGACCGCGCCGTTCGACCCCGCCGCGATCGGCCGCAACCTGGCGCGGGCGCCGGCCGTCAAT
CGCATCTTGACGGAGCCGAGCGGATGGCTGTCCAGCGCTGGCGTGCTGGACGACCCATCGCGGCTCCTGGTCTGGCGCAG
CGGCAATGATCCGCTGGTGGTGGTGGCGAGCCGGACCTGGGACGGCGTCTACGCCGTCTGGCGCAACGAGGCGGCGCAGA
TCGGCGCGATGATGCTGGCGCTCATCGTCTTCGTGCTGGCGGCGACACAGGTCGCCGCGCGCGAGATTCAATTGCGCACC
CGGGTCGAGTCCAGGCTCGAGCGGCTCGCGACCACCGATCCGCTGACCGGCCTGAAGAACCGGCGCAAGTTCGACGAGAC
CATCGAAATCGAGTGGCGGCGCGCGCAGCGGGCCCAGGTGCCGCTGGGGCTCCTGATGATCGATGCCGATCATTTCAAGA
GCTACAACGACACGCATGGGCATCAGGCCGGCGACCAGGTGCTGGTCGGCATCGCCGTTTGCATCTCGGATTCGGTGCGG
CGGGCCGGCGACTGCGCCGCGCGCTATGGCGGCGAGGAGTTCGCGGTGCTGCTGCCGGGCACGGCGGAGAAGGATGCGCT
GCATGTCGCCGAGACGATCCGTATCAAGGTCGCGCTGTGGGCCGGCGAGGCCGGCAACGCCTCGATCAGCATTGGCGTCG
CCAGCGTGACGCCGACGCGCGATGCCGACTGGAGCAGCCTGCTGAACGCGGCCGACCGCGCGCTCTACATGGCGAAGGCC
GCGGGCCGCAATCGCTGCATCAGCGTGGCCGCACCGAAGCCGCAGCCGCCGGGCTCGCTGGCGGCGTGA

Upstream 100 bases:

>100_bases
ACAAGCCAGGCCAACGCAACCGCTCGTTAACCTAACATGCGTTACTCGGAGGTTATCCGTCGGTCTACGGACGGAAACCC
ACGGGGGATGGGACGAGCCG

Downstream 100 bases:

>100_bases
CGCGGCGCGCGCGGCGTCACATCTAGCTGTTGGCTTCTAGCTCTTGGCTTCTAGCTCTTGGCTTCTAGCTCTTGGCTTCG
AGGTACTTCTGCATGTCGGC

Product: putative diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 502; Mature: 502

Protein sequence:

>502_residues
MRWIRRTGKAKPPWRLSARTLVTCSISTIIGFSAICASMMIDLRRGEEIRARQSLENLAAGIGADISRNIELYDLSLRAV
GANMLLPEINEVSKPIRQLILFDRASTARYFGAIQVFDANGRLTIDSATLDPSPEDRGDADFFHVQRDRADVGLLVSRPA
QQRGHYSIALSRRISAADGRFVGVVAGSIRLSYFRDLFSRLTLPAGVGLTVLGRDGTVVVTAPFDPAAIGRNLARAPAVN
RILTEPSGWLSSAGVLDDPSRLLVWRSGNDPLVVVASRTWDGVYAVWRNEAAQIGAMMLALIVFVLAATQVAAREIQLRT
RVESRLERLATTDPLTGLKNRRKFDETIEIEWRRAQRAQVPLGLLMIDADHFKSYNDTHGHQAGDQVLVGIAVCISDSVR
RAGDCAARYGGEEFAVLLPGTAEKDALHVAETIRIKVALWAGEAGNASISIGVASVTPTRDADWSSLLNAADRALYMAKA
AGRNRCISVAAPKPQPPGSLAA

Sequences:

>Translated_502_residues
MRWIRRTGKAKPPWRLSARTLVTCSISTIIGFSAICASMMIDLRRGEEIRARQSLENLAAGIGADISRNIELYDLSLRAV
GANMLLPEINEVSKPIRQLILFDRASTARYFGAIQVFDANGRLTIDSATLDPSPEDRGDADFFHVQRDRADVGLLVSRPA
QQRGHYSIALSRRISAADGRFVGVVAGSIRLSYFRDLFSRLTLPAGVGLTVLGRDGTVVVTAPFDPAAIGRNLARAPAVN
RILTEPSGWLSSAGVLDDPSRLLVWRSGNDPLVVVASRTWDGVYAVWRNEAAQIGAMMLALIVFVLAATQVAAREIQLRT
RVESRLERLATTDPLTGLKNRRKFDETIEIEWRRAQRAQVPLGLLMIDADHFKSYNDTHGHQAGDQVLVGIAVCISDSVR
RAGDCAARYGGEEFAVLLPGTAEKDALHVAETIRIKVALWAGEAGNASISIGVASVTPTRDADWSSLLNAADRALYMAKA
AGRNRCISVAAPKPQPPGSLAA
>Mature_502_residues
MRWIRRTGKAKPPWRLSARTLVTCSISTIIGFSAICASMMIDLRRGEEIRARQSLENLAAGIGADISRNIELYDLSLRAV
GANMLLPEINEVSKPIRQLILFDRASTARYFGAIQVFDANGRLTIDSATLDPSPEDRGDADFFHVQRDRADVGLLVSRPA
QQRGHYSIALSRRISAADGRFVGVVAGSIRLSYFRDLFSRLTLPAGVGLTVLGRDGTVVVTAPFDPAAIGRNLARAPAVN
RILTEPSGWLSSAGVLDDPSRLLVWRSGNDPLVVVASRTWDGVYAVWRNEAAQIGAMMLALIVFVLAATQVAAREIQLRT
RVESRLERLATTDPLTGLKNRRKFDETIEIEWRRAQRAQVPLGLLMIDADHFKSYNDTHGHQAGDQVLVGIAVCISDSVR
RAGDCAARYGGEEFAVLLPGTAEKDALHVAETIRIKVALWAGEAGNASISIGVASVTPTRDADWSSLLNAADRALYMAKA
AGRNRCISVAAPKPQPPGSLAA

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral membrane protein (Potential) [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI87082007, Length=172, Percent_Identity=43.0232558139535, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI87081881, Length=176, Percent_Identity=40.3409090909091, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI145693134, Length=157, Percent_Identity=38.2165605095541, Blast_Score=106, Evalue=4e-24,
Organism=Escherichia coli, GI1786584, Length=166, Percent_Identity=37.3493975903614, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI1787262, Length=167, Percent_Identity=37.7245508982036, Blast_Score=96, Evalue=5e-21,
Organism=Escherichia coli, GI1787802, Length=240, Percent_Identity=31.6666666666667, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1787816, Length=261, Percent_Identity=26.0536398467433, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1787541, Length=171, Percent_Identity=33.9181286549708, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1788381, Length=173, Percent_Identity=31.7919075144509, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1788085, Length=179, Percent_Identity=31.8435754189944, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788956, Length=174, Percent_Identity=32.7586206896552, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI87081977, Length=214, Percent_Identity=30.8411214953271, Blast_Score=70, Evalue=4e-13,
Organism=Escherichia coli, GI87081974, Length=186, Percent_Identity=26.3440860215054, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787056, Length=154, Percent_Identity=31.8181818181818, Blast_Score=67, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 54438; Mature: 54438

Theoretical pI: Translated: 9.89; Mature: 9.89

Prosite motif: PS01295 ISPD ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRWIRRTGKAKPPWRLSARTLVTCSISTIIGFSAICASMMIDLRRGEEIRARQSLENLAA
CCCCHHCCCCCCCCEECCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
GIGADISRNIELYDLSLRAVGANMLLPEINEVSKPIRQLILFDRASTARYFGAIQVFDAN
HCCCCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCHHEEEEEEEEECC
GRLTIDSATLDPSPEDRGDADFFHVQRDRADVGLLVSRPAQQRGHYSIALSRRISAADGR
CEEEEECCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCHHHCCCEEEEEEEEEECCCCC
FVGVVAGSIRLSYFRDLFSRLTLPAGVGLTVLGRDGTVVVTAPFDPAAIGRNLARAPAVN
EEEEEECHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEECCCCHHHHCCHHHHCCHHH
RILTEPSGWLSSAGVLDDPSRLLVWRSGNDPLVVVASRTWDGVYAVWRNEAAQIGAMMLA
HHHCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEEEHHCHHHHHHHHHHH
LIVFVLAATQVAAREIQLRTRVESRLERLATTDPLTGLKNRRKFDETIEIEWRRAQRAQV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCEEEEEEEHHHCCCC
PLGLLMIDADHFKSYNDTHGHQAGDQVLVGIAVCISDSVRRAGDCAARYGGEEFAVLLPG
CEEEEEEEHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
TAEKDALHVAETIRIKVALWAGEAGNASISIGVASVTPTRDADWSSLLNAADRALYMAKA
CCCCHHHHEEEEEEEEEEEEECCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
AGRNRCISVAAPKPQPPGSLAA
CCCCCEEEEECCCCCCCCCCCC
>Mature Secondary Structure
MRWIRRTGKAKPPWRLSARTLVTCSISTIIGFSAICASMMIDLRRGEEIRARQSLENLAA
CCCCHHCCCCCCCCEECCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
GIGADISRNIELYDLSLRAVGANMLLPEINEVSKPIRQLILFDRASTARYFGAIQVFDAN
HCCCCCCCCEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCHHEEEEEEEEECC
GRLTIDSATLDPSPEDRGDADFFHVQRDRADVGLLVSRPAQQRGHYSIALSRRISAADGR
CEEEEECCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCHHHCCCEEEEEEEEEECCCCC
FVGVVAGSIRLSYFRDLFSRLTLPAGVGLTVLGRDGTVVVTAPFDPAAIGRNLARAPAVN
EEEEEECHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEEEECCCCHHHHCCHHHHCCHHH
RILTEPSGWLSSAGVLDDPSRLLVWRSGNDPLVVVASRTWDGVYAVWRNEAAQIGAMMLA
HHHCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCCEEEEHHCHHHHHHHHHHH
LIVFVLAATQVAAREIQLRTRVESRLERLATTDPLTGLKNRRKFDETIEIEWRRAQRAQV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCEEEEEEEHHHCCCC
PLGLLMIDADHFKSYNDTHGHQAGDQVLVGIAVCISDSVRRAGDCAARYGGEEFAVLLPG
CEEEEEEEHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
TAEKDALHVAETIRIKVALWAGEAGNASISIGVASVTPTRDADWSSLLNAADRALYMAKA
CCCCHHHHEEEEEEEEEEEEECCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
AGRNRCISVAAPKPQPPGSLAA
CCCCCEEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]