Click here to switch to the map view.

The map label for this gene is 146338124

Identifier: 146338124

GI number: 146338124

Start: 1091524

End: 1092270

Strand: Reverse

Name: 146338124

Synonym: BRADO1020

Alternate gene names: NA

Gene position: 1092270-1091524 (Counterclockwise)

Preceding gene: 146338125

Following gene: 146338123

Centisome position: 14.65

GC content: 67.74

Gene sequence:

>747_bases
GTGGCCGCATATCTGGCGAGCGGGTCCGACGATCGTCAGGCCCAGGTCGCCGCACCCGCGCCGCAGGTCCCGACCGTCGA
TGTCCTCGTCGCCAAAGCTGACATCGGTCTCGGCCAGTCGATCAAGCCCGAACTCCTGCAGTGGCAGAGCTGGCCGGCCT
CGACCGCGAGCTCGAGCTTCATCCGCCGCAACGAGCGGCCGGAAGGCCAGAACGAGGTGACCGGCACGATTGCCCGGGCG
CCCTTCATTGCCGGCGAGCCGATCCGCGAGCAGAAGCTGGTGAAATCCGACGGTTCCGGCTTCATGGCTGCGATCCTGCC
GGCCGGCATGCGCGCCGTCTCGACCGAGATCTCGCCGGAGACCGGCGCCGGCGGCTTCATTCTGCCGAACGACCGCGTCG
ACGTGATCCTGTCCAAGCGCGAGCGCAACCCCGATCAGCCCAACGCCGGCGACGTCGTCAGCTCGGAGATCATCCTCGCC
AATATCCGTGTGCTCGCGATCGACCAGGCGCCGAAGGAAAAGGACGGCCAGACCACGGTGGTCGGCAAGACCGTGACGCT
GGAGCTCAAGCCTGAGCAGGCCGAGACGCTGGCGCGCGCGCGGCAGACCGGGACGCTGTCGCTGGCGTTGCGCAGCATCG
CCGACGTCAACATGGCCGAGCAGCGCTCGGACGATAATCGCAGGCGCGGAGACAGCGTTGCCGTCGTTCGCTTCGGCATT
CCCAGCACGATGACGACGCAGAAGTGA

Upstream 100 bases:

>100_bases
CCCATCACGGCGGCGCAAGCGTCGCGGCGTAATGTGGAAAGTGAAGCGTATGAATACCGCACGCATTGTGGTTCTGACCA
TCGCTGTAGGCGCTGGCGGC

Downstream 100 bases:

>100_bases
TCGAGAGGACGACCAAGATGACTTGCAGCGAAAATCAGCGGAAACTGCGGACCCTGATGGTCCGCGCGCTGTCGCTTTCG
GCCGCCGCTGCGCTGACACT

Product: putative pilus assembly protein CpaB

Products: NA

Alternate protein names: Flp Pilus Assembly CpaB; SAF Domain-Containing Protein; Pilus Assembly Protein CpaB; Pilus Assembly Protein; Pilus Assembly Transmembrane Protein; Flp Pilus Assembly Protein Cpab; CtpC Protein; Flp Pilus Assembly Protein RcpC/CpaB; CpaB Pilus Assembly Protein; Flp Pilus Assembly Protein; Pilus Assembly-Related Exported Protein; Fimbriae-Assembly Related Protein; CpaB2 Pilus Assembly Protein; CpaB2 Flp Pilus Assembly Protein CpaB; Component Of Type IV Pilus; Flp Pilus Assembly Protein CpaB-Like Protein; Components Of Type IV Pilus

Number of amino acids: Translated: 248; Mature: 247

Protein sequence:

>248_residues
MAAYLASGSDDRQAQVAAPAPQVPTVDVLVAKADIGLGQSIKPELLQWQSWPASTASSSFIRRNERPEGQNEVTGTIARA
PFIAGEPIREQKLVKSDGSGFMAAILPAGMRAVSTEISPETGAGGFILPNDRVDVILSKRERNPDQPNAGDVVSSEIILA
NIRVLAIDQAPKEKDGQTTVVGKTVTLELKPEQAETLARARQTGTLSLALRSIADVNMAEQRSDDNRRRGDSVAVVRFGI
PSTMTTQK

Sequences:

>Translated_248_residues
MAAYLASGSDDRQAQVAAPAPQVPTVDVLVAKADIGLGQSIKPELLQWQSWPASTASSSFIRRNERPEGQNEVTGTIARA
PFIAGEPIREQKLVKSDGSGFMAAILPAGMRAVSTEISPETGAGGFILPNDRVDVILSKRERNPDQPNAGDVVSSEIILA
NIRVLAIDQAPKEKDGQTTVVGKTVTLELKPEQAETLARARQTGTLSLALRSIADVNMAEQRSDDNRRRGDSVAVVRFGI
PSTMTTQK
>Mature_247_residues
AAYLASGSDDRQAQVAAPAPQVPTVDVLVAKADIGLGQSIKPELLQWQSWPASTASSSFIRRNERPEGQNEVTGTIARAP
FIAGEPIREQKLVKSDGSGFMAAILPAGMRAVSTEISPETGAGGFILPNDRVDVILSKRERNPDQPNAGDVVSSEIILAN
IRVLAIDQAPKEKDGQTTVVGKTVTLELKPEQAETLARARQTGTLSLALRSIADVNMAEQRSDDNRRRGDSVAVVRFGIP
STMTTQK

Specific function: Unknown

COG id: COG3745

COG function: function code U; Flp pilus assembly protein CpaB

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26482; Mature: 26351

Theoretical pI: Translated: 5.48; Mature: 5.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAYLASGSDDRQAQVAAPAPQVPTVDVLVAKADIGLGQSIKPELLQWQSWPASTASSSF
CCEEECCCCCCCCEEEECCCCCCCEEEEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHH
IRRNERPEGQNEVTGTIARAPFIAGEPIREQKLVKSDGSGFMAAILPAGMRAVSTEISPE
HHCCCCCCCCCHHEEHHHHCCCCCCCCHHHHHHHHCCCCCEEEHHHHHCHHHHHCCCCCC
TGAGGFILPNDRVDVILSKRERNPDQPNAGDVVSSEIILANIRVLAIDQAPKEKDGQTTV
CCCCCEEECCCCEEEEEECCCCCCCCCCCCCHHCCEEEEEEEEEEEECCCCCCCCCCEEE
VGKTVTLELKPEQAETLARARQTGTLSLALRSIADVNMAEQRSDDNRRRGDSVAVVRFGI
EEEEEEEEECCHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHCCCCCHHCCCCEEEEEECC
PSTMTTQK
CCCCCCCC
>Mature Secondary Structure 
AAYLASGSDDRQAQVAAPAPQVPTVDVLVAKADIGLGQSIKPELLQWQSWPASTASSSF
CEEECCCCCCCCEEEECCCCCCCEEEEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHH
IRRNERPEGQNEVTGTIARAPFIAGEPIREQKLVKSDGSGFMAAILPAGMRAVSTEISPE
HHCCCCCCCCCHHEEHHHHCCCCCCCCHHHHHHHHCCCCCEEEHHHHHCHHHHHCCCCCC
TGAGGFILPNDRVDVILSKRERNPDQPNAGDVVSSEIILANIRVLAIDQAPKEKDGQTTV
CCCCCEEECCCCEEEEEECCCCCCCCCCCCCHHCCEEEEEEEEEEEECCCCCCCCCCEEE
VGKTVTLELKPEQAETLARARQTGTLSLALRSIADVNMAEQRSDDNRRRGDSVAVVRFGI
EEEEEEEEECCHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHCCCCCHHCCCCEEEEEECC
PSTMTTQK
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA