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The map label for this gene is dppB [H]

Identifier: 146338000

GI number: 146338000

Start: 943245

End: 944252

Strand: Reverse

Name: dppB [H]

Synonym: BRADO0893

Alternate gene names: 146338000

Gene position: 944252-943245 (Counterclockwise)

Preceding gene: 146338001

Following gene: 146337999

Centisome position: 12.66

GC content: 68.15

Gene sequence:

>1008_bases
ATGCGCTGGAGCGCCCTACTCAAGCGCCTCGCTCTGATCCCGCCGACCCTGCTCGGCGTCGGCGCCATCGTGTTCGTGCT
GTTGCGCGTCGTGCCCGGCGATCCCATCGCGATGATGATCCCGCCGGGCGCCTCGCCCGCCGATATCGCCCGGCTGCGTG
CGCTCTACGGCCTCGACCAGCCGCTGCTGTCGCAGTTCGTCACCTGGCTCGGCCAGGTCGCATCAGGCGATTTCGGCCGC
TCGATCAGCCTGCGCCAGCAGGTGTTCGAGCTGGTCGGCGCGCGGCTGCCCGCAACGCTCGAGCTCGCCGCGCTCTCCGT
CATCATGGCTCTGCTGATGGGGACAGCCGTCGCGCTGGTGGGCAGCCTGCTGCGCGGCAGCCGCGCCGAATGGCTGCTCG
ACACCACCAACGGCGTCTTCCTCGCGATTCCGGATTTCCTGTGGGCGCTGATCCTGCTGCTCGGCTTCGGCGTGCTGCTG
CCGCTGCTGCCGATCTCCGGCCGGCTCGATCCGCAGCTCGCAATCGCCTTCCGCACCCACTTCTATCTGATCGAAAGCCT
GCTGACGCTCCGCCTCGACGTCGCTACGGACCTGCTGCGCCATATGCTGCTGCCGTCGCTGGCGCTGGCGCTGCCGTTCG
CCGCGCTGGTCGCGCGTCTTCTGAAGGCGCAGCTCGCCGAGGCGGAGGATCAGGACTACGCGCAGATCGCCCACACCCGC
GGCTTCTCCCGCACCACCATCCTGCAGCGCGAGGTGTTTCCCAACGCGCTGATCCCGACCGTGGCGCTGTCGGGCGTGCA
GGTGACCCTGCTGCTTGGCGGCACCGTGCTGGTCGAGCGCATCTTCTCCTATGAGGGCATCGGCAACATGGCGATCGATG
CCGTCATCAACCGCGACTTCCCGCTGATCCAGGGGCTGATCCTGACCTTTGCCGTGCTCTTCATCGCCCTCAACCTCGCC
GTCGACCTGCTGGTGGCGCTGCTCGATCCGCGACTGCGCCATGGATGA

Upstream 100 bases:

>100_bases
TCCAGCCGATCGTACACAAGAAGGGGCTGAAGGTGGTGCCGCAGGCCAACGGCATGATCCTGCCGCAGCTCGTGACTCAG
GGCTGAGACGGAGCAGAGCG

Downstream 100 bases:

>100_bases
CCGCAATGGCTGATCTTGTTCTCTCCGGTCCGATCATCGCATCGCCATCACGATGGCGCAGCGCGCTCGCGCGCGGCGGC
GCGCGGCTGTGGATCGGTGG

Product: peptide ABC transporter permease

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MRWSALLKRLALIPPTLLGVGAIVFVLLRVVPGDPIAMMIPPGASPADIARLRALYGLDQPLLSQFVTWLGQVASGDFGR
SISLRQQVFELVGARLPATLELAALSVIMALLMGTAVALVGSLLRGSRAEWLLDTTNGVFLAIPDFLWALILLLGFGVLL
PLLPISGRLDPQLAIAFRTHFYLIESLLTLRLDVATDLLRHMLLPSLALALPFAALVARLLKAQLAEAEDQDYAQIAHTR
GFSRTTILQREVFPNALIPTVALSGVQVTLLLGGTVLVERIFSYEGIGNMAIDAVINRDFPLIQGLILTFAVLFIALNLA
VDLLVALLDPRLRHG

Sequences:

>Translated_335_residues
MRWSALLKRLALIPPTLLGVGAIVFVLLRVVPGDPIAMMIPPGASPADIARLRALYGLDQPLLSQFVTWLGQVASGDFGR
SISLRQQVFELVGARLPATLELAALSVIMALLMGTAVALVGSLLRGSRAEWLLDTTNGVFLAIPDFLWALILLLGFGVLL
PLLPISGRLDPQLAIAFRTHFYLIESLLTLRLDVATDLLRHMLLPSLALALPFAALVARLLKAQLAEAEDQDYAQIAHTR
GFSRTTILQREVFPNALIPTVALSGVQVTLLLGGTVLVERIFSYEGIGNMAIDAVINRDFPLIQGLILTFAVLFIALNLA
VDLLVALLDPRLRHG
>Mature_335_residues
MRWSALLKRLALIPPTLLGVGAIVFVLLRVVPGDPIAMMIPPGASPADIARLRALYGLDQPLLSQFVTWLGQVASGDFGR
SISLRQQVFELVGARLPATLELAALSVIMALLMGTAVALVGSLLRGSRAEWLLDTTNGVFLAIPDFLWALILLLGFGVLL
PLLPISGRLDPQLAIAFRTHFYLIESLLTLRLDVATDLLRHMLLPSLALALPFAALVARLLKAQLAEAEDQDYAQIAHTR
GFSRTTILQREVFPNALIPTVALSGVQVTLLLGGTVLVERIFSYEGIGNMAIDAVINRDFPLIQGLILTFAVLFIALNLA
VDLLVALLDPRLRHG

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=336, Percent_Identity=33.9285714285714, Blast_Score=187, Evalue=1e-48,
Organism=Escherichia coli, GI1787053, Length=331, Percent_Identity=32.02416918429, Blast_Score=175, Evalue=3e-45,
Organism=Escherichia coli, GI1789888, Length=333, Percent_Identity=31.5315315315315, Blast_Score=162, Evalue=3e-41,
Organism=Escherichia coli, GI1787761, Length=334, Percent_Identity=32.6347305389222, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1787550, Length=276, Percent_Identity=32.6086956521739, Blast_Score=135, Evalue=5e-33,
Organism=Escherichia coli, GI1787497, Length=332, Percent_Identity=25.9036144578313, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI1788504, Length=372, Percent_Identity=25.8064516129032, Blast_Score=116, Evalue=2e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36236; Mature: 36236

Theoretical pI: Translated: 7.85; Mature: 7.85

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRWSALLKRLALIPPTLLGVGAIVFVLLRVVPGDPIAMMIPPGASPADIARLRALYGLDQ
CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCH
PLLSQFVTWLGQVASGDFGRSISLRQQVFELVGARLPATLELAALSVIMALLMGTAVALV
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
GSLLRGSRAEWLLDTTNGVFLAIPDFLWALILLLGFGVLLPLLPISGRLDPQLAIAFRTH
HHHHCCCCCCEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
FYLIESLLTLRLDVATDLLRHMLLPSLALALPFAALVARLLKAQLAEAEDQDYAQIAHTR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHC
GFSRTTILQREVFPNALIPTVALSGVQVTLLLGGTVLVERIFSYEGIGNMAIDAVINRDF
CCHHHHHHHHHHCCCHHHHHHHHCCCEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCH
PLIQGLILTFAVLFIALNLAVDLLVALLDPRLRHG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCC
>Mature Secondary Structure
MRWSALLKRLALIPPTLLGVGAIVFVLLRVVPGDPIAMMIPPGASPADIARLRALYGLDQ
CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCH
PLLSQFVTWLGQVASGDFGRSISLRQQVFELVGARLPATLELAALSVIMALLMGTAVALV
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
GSLLRGSRAEWLLDTTNGVFLAIPDFLWALILLLGFGVLLPLLPISGRLDPQLAIAFRTH
HHHHCCCCCCEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
FYLIESLLTLRLDVATDLLRHMLLPSLALALPFAALVARLLKAQLAEAEDQDYAQIAHTR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHC
GFSRTTILQREVFPNALIPTVALSGVQVTLLLGGTVLVERIFSYEGIGNMAIDAVINRDF
CCHHHHHHHHHHCCCHHHHHHHHCCCEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCH
PLIQGLILTFAVLFIALNLAVDLLVALLDPRLRHG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]