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The map label for this gene is ybeY [C]

Identifier: 146337217

GI number: 146337217

Start: 49011

End: 49553

Strand: Direct

Name: ybeY [C]

Synonym: BRADO0043

Alternate gene names: 146337217

Gene position: 49011-49553 (Clockwise)

Preceding gene: 146337216

Following gene: 146337218

Centisome position: 0.66

GC content: 64.09

Gene sequence:

>543_bases
ATGCCAGCGCCATTCGCACAGAACTCGACCAGGATGCCACAAAGTCCCATTCCGATCACCGAGGTCATTGTCGCCGCCGA
CTGCTGGCAGGACCAGCCCGACGCCGAGGACGTCATACAACGCGCCATCATCGCCGCCGCAGAGATGGTTGATGCCGACG
TGGGCGATGCCGAGATCGCGGTCATGCTGACCGATGATGGCGGCATCCGCACCCTGAACAGCAATTGGCGCGGCATCGAC
AAGCCGACCAACGTGTTGTCATTCCCGGCGCTGCAGCCGACGGGCCCGCGCGGCGACGAGGACGCGCCGCGCATGCTCGG
CGACATCGCCATCGCCTACGAGACGATGCGCCGCGAGGCCGATGAGGAGCAGAAGCCGTTCGCGCATCATCTCAGCCATC
TCACCGTGCACGGCTTCCTGCATCTGATCGGCTACGATCACGAGACCGATGACGAGGCCGAGGAGATGGAGGCGCTAGAG
ACCGAAATCCTGGCCCATCTCGGCATCCCCGATCCCTATGCCGACCGGGAACGGATGCATTGA

Upstream 100 bases:

>100_bases
CGGTGAGGACGTCATTCGCCACGAATTGGTGGCGCGCATCGTTGCGGCCTATGAGGGCCCGCAGGCCCGCTGATCCCCGG
AGCACGCCGATGGGCGCGCG

Downstream 100 bases:

>100_bases
CCATGGCCGACTCCGAGCCCATCCATGACAACCCGCGCCAGACGCGCAATCTGCCGGCCGTGGTGCCGCCGTCCGAGCTC
GGCCGTTCGCCGAGCGAGAA

Product: putative metal-dependent hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 180; Mature: 179

Protein sequence:

>180_residues
MPAPFAQNSTRMPQSPIPITEVIVAADCWQDQPDAEDVIQRAIIAAAEMVDADVGDAEIAVMLTDDGGIRTLNSNWRGID
KPTNVLSFPALQPTGPRGDEDAPRMLGDIAIAYETMRREADEEQKPFAHHLSHLTVHGFLHLIGYDHETDDEAEEMEALE
TEILAHLGIPDPYADRERMH

Sequences:

>Translated_180_residues
MPAPFAQNSTRMPQSPIPITEVIVAADCWQDQPDAEDVIQRAIIAAAEMVDADVGDAEIAVMLTDDGGIRTLNSNWRGID
KPTNVLSFPALQPTGPRGDEDAPRMLGDIAIAYETMRREADEEQKPFAHHLSHLTVHGFLHLIGYDHETDDEAEEMEALE
TEILAHLGIPDPYADRERMH
>Mature_179_residues
PAPFAQNSTRMPQSPIPITEVIVAADCWQDQPDAEDVIQRAIIAAAEMVDADVGDAEIAVMLTDDGGIRTLNSNWRGIDK
PTNVLSFPALQPTGPRGDEDAPRMLGDIAIAYETMRREADEEQKPFAHHLSHLTVHGFLHLIGYDHETDDEAEEMEALET
EILAHLGIPDPYADRERMH

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity [H]

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family [H]

Homologues:

Organism=Escherichia coli, GI1786880, Length=123, Percent_Identity=48.780487804878, Blast_Score=97, Evalue=9e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036 [H]

Pfam domain/function: PF02130 UPF0054 [H]

EC number: NA

Molecular weight: Translated: 19947; Mature: 19816

Theoretical pI: Translated: 4.10; Mature: 4.10

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAPFAQNSTRMPQSPIPITEVIVAADCWQDQPDAEDVIQRAIIAAAEMVDADVGDAEIA
CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEE
VMLTDDGGIRTLNSNWRGIDKPTNVLSFPALQPTGPRGDEDAPRMLGDIAIAYETMRREA
EEEECCCCEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
DEEQKPFAHHLSHLTVHGFLHLIGYDHETDDEAEEMEALETEILAHLGIPDPYADRERMH
CHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
PAPFAQNSTRMPQSPIPITEVIVAADCWQDQPDAEDVIQRAIIAAAEMVDADVGDAEIA
CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEE
VMLTDDGGIRTLNSNWRGIDKPTNVLSFPALQPTGPRGDEDAPRMLGDIAIAYETMRREA
EEEECCCCEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
DEEQKPFAHHLSHLTVHGFLHLIGYDHETDDEAEEMEALETEILAHLGIPDPYADRERMH
CHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA