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The map label for this gene is rpoE [C]

Identifier: 146302760

GI number: 146302760

Start: 6073284

End: 6073784

Strand: Direct

Name: rpoE [C]

Synonym: Fjoh_5033

Alternate gene names: 146302760

Gene position: 6073284-6073784 (Clockwise)

Preceding gene: 146302759

Following gene: 146302761

Centisome position: 99.61

GC content: 35.13

Gene sequence:

>501_bases
ATGAACCGTGATGCCCAGCGTCAGGTTTATGAGCACATGGCTCCAAAATTGTATCGCGTCTGCAAACGATACCTAAAGAA
AGAAGAAGAAATCGAAGAGGCGCTTGCCGATGCTTTCTATACCATATTTACAAAATTAGATCAGCTTAAGGAAGAAAAAG
CCTTTGAAGCTTGGGCCAGAAAAATTGCCGTTAATTATTGTTTGGCATCAATCAAGAAAAACACAAACTTCAATATGTAT
CTTGATGATGTTAAGGTTCTTTCGCAGCCTTTTACAGAAGAAATGAACGCATTAGAAGAAGAAGATTTACTCAATTTATT
AAACCATATTCCAGACGGCTGTAAAACTGTTTTTAACCTTTTTGTTATTGAAGGTTACGGACATAAAGAAATTGCAGCTA
TGCTTAACATTTCTGAAGGCACTTCAAAATCACAATTGAATGCCTCAAAAACCAAGCTGAAGGAATTAGTAAATAAATTG
TATTATCAAAAAGCAAAATAG

Upstream 100 bases:

>100_bases
TTTTTTCATCTGCGTCCCAACCTTTTTATCTTTTTAGCACTCTTTATAATTAAAGACCAAAATTGTGATAAACGAAACTC
TAATTTCTAACTGCAAAAAA

Downstream 100 bases:

>100_bases
TCATGGACAATCAAGATAAAATATTCAACAGATTTAAGGAAGCTGCAGATAGTGCAGAAACCAAAGATTTTCCGGGAATG
GAAAAAGTCTGGTCGCGCGT

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma-70 Factor ECF Subfamily; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma-W Factor; ECF Family RNA Polymerase Sigma Factor; ECF Family RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma-24 Subunit RpoE; RNA Polymerase Sigma Factor SigW; ECF Subfamily RNA Polymerase Sigma Factor

Number of amino acids: Translated: 166; Mature: 166

Protein sequence:

>166_residues
MNRDAQRQVYEHMAPKLYRVCKRYLKKEEEIEEALADAFYTIFTKLDQLKEEKAFEAWARKIAVNYCLASIKKNTNFNMY
LDDVKVLSQPFTEEMNALEEEDLLNLLNHIPDGCKTVFNLFVIEGYGHKEIAAMLNISEGTSKSQLNASKTKLKELVNKL
YYQKAK

Sequences:

>Translated_166_residues
MNRDAQRQVYEHMAPKLYRVCKRYLKKEEEIEEALADAFYTIFTKLDQLKEEKAFEAWARKIAVNYCLASIKKNTNFNMY
LDDVKVLSQPFTEEMNALEEEDLLNLLNHIPDGCKTVFNLFVIEGYGHKEIAAMLNISEGTSKSQLNASKTKLKELVNKL
YYQKAK
>Mature_166_residues
MNRDAQRQVYEHMAPKLYRVCKRYLKKEEEIEEALADAFYTIFTKLDQLKEEKAFEAWARKIAVNYCLASIKKNTNFNMY
LDDVKVLSQPFTEEMNALEEEDLLNLLNHIPDGCKTVFNLFVIEGYGHKEIAAMLNISEGTSKSQLNASKTKLKELVNKL
YYQKAK

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Is Involved In Heat Shock And Oxidative Stress Response; It Is Believed To Control Protein Processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19357; Mature: 19357

Theoretical pI: Translated: 7.43; Mature: 7.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRDAQRQVYEHMAPKLYRVCKRYLKKEEEIEEALADAFYTIFTKLDQLKEEKAFEAWAR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KIAVNYCLASIKKNTNFNMYLDDVKVLSQPFTEEMNALEEEDLLNLLNHIPDGCKTVFNL
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
FVIEGYGHKEIAAMLNISEGTSKSQLNASKTKLKELVNKLYYQKAK
HHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNRDAQRQVYEHMAPKLYRVCKRYLKKEEEIEEALADAFYTIFTKLDQLKEEKAFEAWAR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KIAVNYCLASIKKNTNFNMYLDDVKVLSQPFTEEMNALEEEDLLNLLNHIPDGCKTVFNL
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
FVIEGYGHKEIAAMLNISEGTSKSQLNASKTKLKELVNKLYYQKAK
HHHCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA