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The map label for this gene is yddR [H]

Identifier: 146302698

GI number: 146302698

Start: 6007920

End: 6008687

Strand: Direct

Name: yddR [H]

Synonym: Fjoh_4971

Alternate gene names: 146302698

Gene position: 6007920-6008687 (Clockwise)

Preceding gene: 146302697

Following gene: 146302701

Centisome position: 98.54

GC content: 36.46

Gene sequence:

>768_bases
ATGAAAATACATCATTTGCGAAATGCCACATTGGTTATTGAAACAGAAGAGCATGTTATTCTGGTTGATCCAATGTTAGG
AAAAAGAAAAACAATTGCACCTTTCACAATTTTTCGTTACAAACCTAAGAGGAATCCGCTGGTAGCTTTGCCAAAAAACA
GCAGAGAAATTTTGAGCAGAGTAACTCACTGCCTGATAACACATTTACACCCAGATCATATTGATAAGGCGGGCGAAGTA
TTTTTGCGAAGAAAAAGTATTCCGGTTATCTGCAGTGCAAAAGATGAAAAATCTCTTTCATTAAGAGGTCTAAATATTAT
GCAGACTTTAAATTACTGGGAACCTCAGCCTTTTTTAGGAGGAAGAATTATTGGTATTCCTGCCCTTCACGGCTACGGTT
TTATAGCAAAATTAATGGGAAATGTAATGGGTTTTTACGTTGAGCTTACCAACGAAAAGTCAATTTATATAAGTTCAGAC
ACTATTTTTACTGATGATGTACAAAAAGTATTGATAGAATTAAAACCAGACATTGCAACCGTTGCCTGCGGTACTGCCAG
ATTAGACATTGGCCAGCCATTGTTAATGCGTATGAATGATATTTTGAAATTTGCAACTCTCGCACCCGGAAAGGTTTTTG
CAAATCACCTGGAAGCTCTAAATCACTGTCCTACAACCCGAGAAGAATTGAGAAGAGCTTTGACAGAAAATAATCTTTTA
TATAAAACTGCAATTCCAAGTGACGGAACCAGCGTTGAATATTTATAA

Upstream 100 bases:

>100_bases
TTCTATTGAATAAATAATAACAATTCTGTTAAAAATAAAGAAAAATCTGTAAAACAATTTTCAAAAAACTTTGTATTTTT
AAGTTCTAATTTTCCCAGAT

Downstream 100 bases:

>100_bases
AACAAGGAGTCCAAATTCTCGCAGTGTATTTACAGGTTTAGAATACCAAAACAATTCAAAATCGTCCAGCGAAGTTTCAA
AATCATTTTTCACTTCCTGA

Product: beta-lactamase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MKIHHLRNATLVIETEEHVILVDPMLGKRKTIAPFTIFRYKPKRNPLVALPKNSREILSRVTHCLITHLHPDHIDKAGEV
FLRRKSIPVICSAKDEKSLSLRGLNIMQTLNYWEPQPFLGGRIIGIPALHGYGFIAKLMGNVMGFYVELTNEKSIYISSD
TIFTDDVQKVLIELKPDIATVACGTARLDIGQPLLMRMNDILKFATLAPGKVFANHLEALNHCPTTREELRRALTENNLL
YKTAIPSDGTSVEYL

Sequences:

>Translated_255_residues
MKIHHLRNATLVIETEEHVILVDPMLGKRKTIAPFTIFRYKPKRNPLVALPKNSREILSRVTHCLITHLHPDHIDKAGEV
FLRRKSIPVICSAKDEKSLSLRGLNIMQTLNYWEPQPFLGGRIIGIPALHGYGFIAKLMGNVMGFYVELTNEKSIYISSD
TIFTDDVQKVLIELKPDIATVACGTARLDIGQPLLMRMNDILKFATLAPGKVFANHLEALNHCPTTREELRRALTENNLL
YKTAIPSDGTSVEYL
>Mature_255_residues
MKIHHLRNATLVIETEEHVILVDPMLGKRKTIAPFTIFRYKPKRNPLVALPKNSREILSRVTHCLITHLHPDHIDKAGEV
FLRRKSIPVICSAKDEKSLSLRGLNIMQTLNYWEPQPFLGGRIIGIPALHGYGFIAKLMGNVMGFYVELTNEKSIYISSD
TIFTDDVQKVLIELKPDIATVACGTARLDIGQPLLMRMNDILKFATLAPGKVFANHLEALNHCPTTREELRRALTENNLL
YKTAIPSDGTSVEYL

Specific function: Unknown

COG id: COG2220

COG function: function code R; Predicted Zn-dependent hydrolases of the beta-lactamase fold

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0173 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001279 [H]

Pfam domain/function: PF00753 Lactamase_B [H]

EC number: NA

Molecular weight: Translated: 28762; Mature: 28762

Theoretical pI: Translated: 9.35; Mature: 9.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIHHLRNATLVIETEEHVILVDPMLGKRKTIAPFTIFRYKPKRNPLVALPKNSREILSR
CCCEEECCEEEEEEECCCEEEECCCCCCCCCCCCEEEEEECCCCCCEEEECCCHHHHHHH
VTHCLITHLHPDHIDKAGEVFLRRKSIPVICSAKDEKSLSLRGLNIMQTLNYWEPQPFLG
HHHHHHHCCCHHHCCCHHHHEEEECCCCEEEECCCCCCEEECCCHHHHHHCCCCCCCCCC
GRIIGIPALHGYGFIAKLMGNVMGFYVELTNEKSIYISSDTIFTDDVQKVLIELKPDIAT
CEEEEECCCCHHHHHHHHHHHHHEEEEEEECCCEEEEECCCEEHHHHHHHHHHCCCCEEE
VACGTARLDIGQPLLMRMNDILKFATLAPGKVFANHLEALNHCPTTREELRRALTENNLL
EEECCEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEE
YKTAIPSDGTSVEYL
EEEECCCCCCEECCC
>Mature Secondary Structure
MKIHHLRNATLVIETEEHVILVDPMLGKRKTIAPFTIFRYKPKRNPLVALPKNSREILSR
CCCEEECCEEEEEEECCCEEEECCCCCCCCCCCCEEEEEECCCCCCEEEECCCHHHHHHH
VTHCLITHLHPDHIDKAGEVFLRRKSIPVICSAKDEKSLSLRGLNIMQTLNYWEPQPFLG
HHHHHHHCCCHHHCCCHHHHEEEECCCCEEEECCCCCCEEECCCHHHHHHCCCCCCCCCC
GRIIGIPALHGYGFIAKLMGNVMGFYVELTNEKSIYISSDTIFTDDVQKVLIELKPDIAT
CEEEEECCCCHHHHHHHHHHHHHEEEEEEECCCEEEEECCCEEHHHHHHHHHHCCCCEEE
VACGTARLDIGQPLLMRMNDILKFATLAPGKVFANHLEALNHCPTTREELRRALTENNLL
EEECCEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEE
YKTAIPSDGTSVEYL
EEEECCCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9341680; 9384377 [H]