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The map label for this gene is appB [C]

Identifier: 146302605

GI number: 146302605

Start: 5899981

End: 5901057

Strand: Reverse

Name: appB [C]

Synonym: Fjoh_4878

Alternate gene names: 146302605

Gene position: 5901057-5899981 (Counterclockwise)

Preceding gene: 146302606

Following gene: 146302604

Centisome position: 96.79

GC content: 36.95

Gene sequence:

>1077_bases
ATGGAATTTTTTTGGTACGTAGTTTTAATGGGAATTCTGGCTGTTTATCTGGTTTTAGACGGCTACGATTTTGGAGCAGG
AATAATTCATTTATTTTTTGCTGATACAGAAAAAGATAAAAAAGCAATTACAAGCGCCATTGGTCCGTTTTGGGATGCCA
ATGAAGTTTGGCTTATTGCGGCCGGAGGTGTTTTGTTTTTTGCTTTCCCAACTTTATATGCATCCTCTTTCAGCGGTTTT
TATCTGCCGTTGATTATGATTTTATGGCTTTTGATTTTCCGTGCCATCGGACTTGAAATGCGCGGACAAATTCATAATCC
AATGTGGGAAAGTATTTGGGACAAAGCTTTCGGGATTGCGAGTCTGCTTTTGGCGTTATTCTTCGGAATTGCTTTAGGAA
ATATTGTTCGCGGTGTCAATCTCGGAATGGTTCAAAATGGCGTTTCTACTCAGGAACCTCATTTTTTCTTTCTGCCTTTG
TGGAATCCAACTTTTAGTCCGCAGGCAAATGAATTGGGAATTATCGACTGGTTTACACTTTTCTTAGGAATTGTGAGTGT
GGTTGCTCTAACAATTCACGGTGCCAACTGGATTATTTATAAAACAAATTCATCGTTGAACCCAAAACTCAAAAAAGTGG
TTTTTGTCTTGAATATTGTTCTGCTGGTTTTAGTTTGTATATCGTTACAAATCTGGCATTTTATAGAGCCGAAACCGTTT
CATAATTTTGTTGAAAATCCTATTTTGTGGTTTTTCCCGCTTTTAACTTTTGTTGGTATTGCGGGTTTATTTAAAGTACG
TTCCTTTAAAAAAGACGGTCACGGATTTATATTTTCAACTTTATTTTTAGTAGGCGGATTTGCTTCAACAGCTGTTTCAA
TTTTTCCAAATGTTCTGCCATCAACCAATAAAGTAAATCCGTCGTTAACGATTTACAACACCGCTGCTCATGAATACGGA
TTAAGCGCCGGATTGAGCTGGTTTTTTATCGCTTTGTTTCTGGTTATTATTTATTTTATTATTCAGTATCGCGTTTTCAG
CGGTAAAATGGATGATATTGGATATGGGGAACATTGA

Upstream 100 bases:

>100_bases
GTTTATACCTTTTACTGGGAATGTTGTTTTTGCTTTTAGTTGGAAAAATTATTAATAAAGGCCCTCATAATGTGGACCTT
TCATCAGAAAAAATATAGGT

Downstream 100 bases:

>100_bases
TGGTTTTGTTTAAAATGTATTATAATAAATATAAAAAGAGTAGTAGTGATAAAAATTGTTATAAAAAATAAATACAAATC
TATAGACGTTTGTGAGTTTG

Product: cytochrome d ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome oxidase subunit II [H]

Number of amino acids: Translated: 358; Mature: 358

Protein sequence:

>358_residues
MEFFWYVVLMGILAVYLVLDGYDFGAGIIHLFFADTEKDKKAITSAIGPFWDANEVWLIAAGGVLFFAFPTLYASSFSGF
YLPLIMILWLLIFRAIGLEMRGQIHNPMWESIWDKAFGIASLLLALFFGIALGNIVRGVNLGMVQNGVSTQEPHFFFLPL
WNPTFSPQANELGIIDWFTLFLGIVSVVALTIHGANWIIYKTNSSLNPKLKKVVFVLNIVLLVLVCISLQIWHFIEPKPF
HNFVENPILWFFPLLTFVGIAGLFKVRSFKKDGHGFIFSTLFLVGGFASTAVSIFPNVLPSTNKVNPSLTIYNTAAHEYG
LSAGLSWFFIALFLVIIYFIIQYRVFSGKMDDIGYGEH

Sequences:

>Translated_358_residues
MEFFWYVVLMGILAVYLVLDGYDFGAGIIHLFFADTEKDKKAITSAIGPFWDANEVWLIAAGGVLFFAFPTLYASSFSGF
YLPLIMILWLLIFRAIGLEMRGQIHNPMWESIWDKAFGIASLLLALFFGIALGNIVRGVNLGMVQNGVSTQEPHFFFLPL
WNPTFSPQANELGIIDWFTLFLGIVSVVALTIHGANWIIYKTNSSLNPKLKKVVFVLNIVLLVLVCISLQIWHFIEPKPF
HNFVENPILWFFPLLTFVGIAGLFKVRSFKKDGHGFIFSTLFLVGGFASTAVSIFPNVLPSTNKVNPSLTIYNTAAHEYG
LSAGLSWFFIALFLVIIYFIIQYRVFSGKMDDIGYGEH
>Mature_358_residues
MEFFWYVVLMGILAVYLVLDGYDFGAGIIHLFFADTEKDKKAITSAIGPFWDANEVWLIAAGGVLFFAFPTLYASSFSGF
YLPLIMILWLLIFRAIGLEMRGQIHNPMWESIWDKAFGIASLLLALFFGIALGNIVRGVNLGMVQNGVSTQEPHFFFLPL
WNPTFSPQANELGIIDWFTLFLGIVSVVALTIHGANWIIYKTNSSLNPKLKKVVFVLNIVLLVLVCISLQIWHFIEPKPF
HNFVENPILWFFPLLTFVGIAGLFKVRSFKKDGHGFIFSTLFLVGGFASTAVSIFPNVLPSTNKVNPSLTIYNTAAHEYG
LSAGLSWFFIALFLVIIYFIIQYRVFSGKMDDIGYGEH

Specific function: Probable cytochrome oxidase subunit [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB and CydB. Probable ortholog of the ancestor of AppB/CydB [H]

Homologues:

Organism=Escherichia coli, GI1787213, Length=385, Percent_Identity=29.3506493506493, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI1786954, Length=389, Percent_Identity=28.2776349614396, Blast_Score=159, Evalue=3e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 40274; Mature: 40274

Theoretical pI: Translated: 7.03; Mature: 7.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFFWYVVLMGILAVYLVLDGYDFGAGIIHLFFADTEKDKKAITSAIGPFWDANEVWLIA
CHHHHHHHHHHHHHHHHHHCCCCCCCHHEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEE
AGGVLFFAFPTLYASSFSGFYLPLIMILWLLIFRAIGLEMRGQIHNPMWESIWDKAFGIA
ECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHCCCCCCHHHHHHHHHHHHHH
SLLLALFFGIALGNIVRGVNLGMVQNGVSTQEPHFFFLPLWNPTFSPQANELGIIDWFTL
HHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHH
FLGIVSVVALTIHGANWIIYKTNSSLNPKLKKVVFVLNIVLLVLVCISLQIWHFIEPKPF
HHHHHHHHHHHEECCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
HNFVENPILWFFPLLTFVGIAGLFKVRSFKKDGHGFIFSTLFLVGGFASTAVSIFPNVLP
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
STNKVNPSLTIYNTAAHEYGLSAGLSWFFIALFLVIIYFIIQYRVFSGKMDDIGYGEH
CCCCCCCCEEEEECHHHHHCHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MEFFWYVVLMGILAVYLVLDGYDFGAGIIHLFFADTEKDKKAITSAIGPFWDANEVWLIA
CHHHHHHHHHHHHHHHHHHCCCCCCCHHEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEE
AGGVLFFAFPTLYASSFSGFYLPLIMILWLLIFRAIGLEMRGQIHNPMWESIWDKAFGIA
ECCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHCCCCCCHHHHHHHHHHHHHH
SLLLALFFGIALGNIVRGVNLGMVQNGVSTQEPHFFFLPLWNPTFSPQANELGIIDWFTL
HHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHH
FLGIVSVVALTIHGANWIIYKTNSSLNPKLKKVVFVLNIVLLVLVCISLQIWHFIEPKPF
HHHHHHHHHHHEECCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
HNFVENPILWFFPLLTFVGIAGLFKVRSFKKDGHGFIFSTLFLVGGFASTAVSIFPNVLP
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
STNKVNPSLTIYNTAAHEYGLSAGLSWFFIALFLVIIYFIIQYRVFSGKMDDIGYGEH
CCCCCCCCEEEEECHHHHHCHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]