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The map label for this gene is cydA [H]

Identifier: 146302606

GI number: 146302606

Start: 5901060

End: 5902445

Strand: Reverse

Name: cydA [H]

Synonym: Fjoh_4879

Alternate gene names: 146302606

Gene position: 5902445-5901060 (Counterclockwise)

Preceding gene: 146302607

Following gene: 146302605

Centisome position: 96.81

GC content: 36.15

Gene sequence:

>1386_bases
ATGGTTAAATTTGTAGAACTTCATAAACAAATTACCATTATGGAAGAAATGCTCTTTTATGACCGAATGCAATTCGCCTT
CACCATTACTTTTCATTATCTTTTTCCGCAGCTTACAATGGGTCTTTCGCTCATCATTGTTTACTTCAAATGGAAATACT
TAAAAACTAATAACGAACAATACAATCACGCCACCCATTTCTGGATGAAAATCTTTGCCCTCAATTTTGCAATGGGTGTG
GTAACAGGAATTCCAATGGAATTTCAATTTGGAACCAACTGGGCAAAATTCTCCGAATTAACCGGAGGAATCATAGGCCA
GACTCTCGCAATGGAAGGAATGTTTTCTTTCTTTCTCGAATCCTCTTTTCTGGGATTATTTTTATTTGGAGAAAAACTCC
TTGGCCATAAATGGCATTTTGTAACCGGATTATTAATTATGATAGGTTCCTGGGCCAGCGGTTACTTAATTATTGCTACA
CATTCCTGGATGCAGAATCCTGTTGGATATGAAATCCTCGAAAACGGAAAATTTGTATTGAATAATTTTCAGGCTTTATT
CCTTAATCCTTGGCTTTGGCCTTCTTATTTACACAATCAGGCAGCTTCTTTAGTTACGAGTTCGTTTGTTGTGGCAGGAA
TTGGTGCTTTTTATATTTTGAGTAAGAAGAATGTTTCTTTTGGGAAATTGTTCCTAAAAACGGGAGTAATCTTCGGATTG
ATTTCGAGTGTAATTGTAGCAGTTCCAACCGGAGATTTACTGGCAAAAAATGTTGTAAAATATCAGCCTGTAACTTTTGC
AGCAATGGAAGGAATTTTTCATACCGAGAAAAAAGGTTCTGAAATTGTTTTAATAGGACAGCCCGATGTAAAAGACAAAA
AACTCGATAATAAAATTGCCGTTCCTAATATTTTAAGTTTCCTGACTTACGGAAACTGGGAGCAGGAAATAAAAGGTTTA
GATCAGTTTGAAGAAGACCTGCATCCAACCAATATTTCGGGATTGTATTATGCATATCATATTATGGTAGGACTTGGAAC
GGTTTTTATTGGATTAATGGTGATTTCGCTTTTCCAATTAATCAGAGGAAAATTATTCCAAACCAAATGGATTTTATGGT
CTTTGATGTTCATGATGCCATTTCCATATATTGCCAATACAACAGGCTGGTATACGGCAGAATTAGGAAGACAGCCGTGG
CTGGTTTACAATTTAATGCGAACTGCAGCCGGCGCTTCGCCAACGGTTTCATCCGGAAATACTTTGTTTACATTACTGGG
TTTTATTGGTTTATACCTTTTACTGGGAATGTTGTTTTTGCTTTTAGTTGGAAAAATTATTAATAAAGGCCCTCATAATG
TGGACCTTTCATCAGAAAAAATATAG

Upstream 100 bases:

>100_bases
CAAAAAAATGACAAGTGTCATTTCTACTCTTTAAATTGTTGAAAAGTTTAACAAATATCAGGTGATAAACTTTTTTTAAA
GGAGGTTAATTCGGGTTCTA

Downstream 100 bases:

>100_bases
GTATGGAATTTTTTTGGTACGTAGTTTTAATGGGAATTCTGGCTGTTTATCTGGTTTTAGACGGCTACGATTTTGGAGCA
GGAATAATTCATTTATTTTT

Product: cytochrome bd ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 461; Mature: 461

Protein sequence:

>461_residues
MVKFVELHKQITIMEEMLFYDRMQFAFTITFHYLFPQLTMGLSLIIVYFKWKYLKTNNEQYNHATHFWMKIFALNFAMGV
VTGIPMEFQFGTNWAKFSELTGGIIGQTLAMEGMFSFFLESSFLGLFLFGEKLLGHKWHFVTGLLIMIGSWASGYLIIAT
HSWMQNPVGYEILENGKFVLNNFQALFLNPWLWPSYLHNQAASLVTSSFVVAGIGAFYILSKKNVSFGKLFLKTGVIFGL
ISSVIVAVPTGDLLAKNVVKYQPVTFAAMEGIFHTEKKGSEIVLIGQPDVKDKKLDNKIAVPNILSFLTYGNWEQEIKGL
DQFEEDLHPTNISGLYYAYHIMVGLGTVFIGLMVISLFQLIRGKLFQTKWILWSLMFMMPFPYIANTTGWYTAELGRQPW
LVYNLMRTAAGASPTVSSGNTLFTLLGFIGLYLLLGMLFLLLVGKIINKGPHNVDLSSEKI

Sequences:

>Translated_461_residues
MVKFVELHKQITIMEEMLFYDRMQFAFTITFHYLFPQLTMGLSLIIVYFKWKYLKTNNEQYNHATHFWMKIFALNFAMGV
VTGIPMEFQFGTNWAKFSELTGGIIGQTLAMEGMFSFFLESSFLGLFLFGEKLLGHKWHFVTGLLIMIGSWASGYLIIAT
HSWMQNPVGYEILENGKFVLNNFQALFLNPWLWPSYLHNQAASLVTSSFVVAGIGAFYILSKKNVSFGKLFLKTGVIFGL
ISSVIVAVPTGDLLAKNVVKYQPVTFAAMEGIFHTEKKGSEIVLIGQPDVKDKKLDNKIAVPNILSFLTYGNWEQEIKGL
DQFEEDLHPTNISGLYYAYHIMVGLGTVFIGLMVISLFQLIRGKLFQTKWILWSLMFMMPFPYIANTTGWYTAELGRQPW
LVYNLMRTAAGASPTVSSGNTLFTLLGFIGLYLLLGMLFLLLVGKIINKGPHNVDLSSEKI
>Mature_461_residues
MVKFVELHKQITIMEEMLFYDRMQFAFTITFHYLFPQLTMGLSLIIVYFKWKYLKTNNEQYNHATHFWMKIFALNFAMGV
VTGIPMEFQFGTNWAKFSELTGGIIGQTLAMEGMFSFFLESSFLGLFLFGEKLLGHKWHFVTGLLIMIGSWASGYLIIAT
HSWMQNPVGYEILENGKFVLNNFQALFLNPWLWPSYLHNQAASLVTSSFVVAGIGAFYILSKKNVSFGKLFLKTGVIFGL
ISSVIVAVPTGDLLAKNVVKYQPVTFAAMEGIFHTEKKGSEIVLIGQPDVKDKKLDNKIAVPNILSFLTYGNWEQEIKGL
DQFEEDLHPTNISGLYYAYHIMVGLGTVFIGLMVISLFQLIRGKLFQTKWILWSLMFMMPFPYIANTTGWYTAELGRQPW
LVYNLMRTAAGASPTVSSGNTLFTLLGFIGLYLLLGMLFLLLVGKIINKGPHNVDLSSEKI

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=507, Percent_Identity=28.7968441814596, Blast_Score=243, Evalue=2e-65,
Organism=Escherichia coli, GI1787212, Length=504, Percent_Identity=28.5714285714286, Blast_Score=206, Evalue=4e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 52258; Mature: 52258

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKFVELHKQITIMEEMLFYDRMQFAFTITFHYLFPQLTMGLSLIIVYFKWKYLKTNNEQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCC
YNHATHFWMKIFALNFAMGVVTGIPMEFQFGTNWAKFSELTGGIIGQTLAMEGMFSFFLE
HHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCHHHHHHHHHHHHHHHHHH
SSFLGLFLFGEKLLGHKWHFVTGLLIMIGSWASGYLIIATHSWMQNPVGYEILENGKFVL
HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEECHHHCCCCCHHHHCCCCEEE
NNFQALFLNPWLWPSYLHNQAASLVTSSFVVAGIGAFYILSKKNVSFGKLFLKTGVIFGL
ECCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHH
ISSVIVAVPTGDLLAKNVVKYQPVTFAAMEGIFHTEKKGSEIVLIGQPDVKDKKLDNKIA
HHHHHEECCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCC
VPNILSFLTYGNWEQEIKGLDQFEEDLHPTNISGLYYAYHIMVGLGTVFIGLMVISLFQL
HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
IRGKLFQTKWILWSLMFMMPFPYIANTTGWYTAELGRQPWLVYNLMRTAAGASPTVSSGN
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHCCCCCCCCCCC
TLFTLLGFIGLYLLLGMLFLLLVGKIINKGPHNVDLSSEKI
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MVKFVELHKQITIMEEMLFYDRMQFAFTITFHYLFPQLTMGLSLIIVYFKWKYLKTNNEQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCC
YNHATHFWMKIFALNFAMGVVTGIPMEFQFGTNWAKFSELTGGIIGQTLAMEGMFSFFLE
HHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHCCHHHHHHHHHHHHHHHHHH
SSFLGLFLFGEKLLGHKWHFVTGLLIMIGSWASGYLIIATHSWMQNPVGYEILENGKFVL
HHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEECHHHCCCCCHHHHCCCCEEE
NNFQALFLNPWLWPSYLHNQAASLVTSSFVVAGIGAFYILSKKNVSFGKLFLKTGVIFGL
ECCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHH
ISSVIVAVPTGDLLAKNVVKYQPVTFAAMEGIFHTEKKGSEIVLIGQPDVKDKKLDNKIA
HHHHHEECCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCC
VPNILSFLTYGNWEQEIKGLDQFEEDLHPTNISGLYYAYHIMVGLGTVFIGLMVISLFQL
HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
IRGKLFQTKWILWSLMFMMPFPYIANTTGWYTAELGRQPWLVYNLMRTAAGASPTVSSGN
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCHHHHHHHHHHCCCCCCCCCCC
TLFTLLGFIGLYLLLGMLFLLLVGKIINKGPHNVDLSSEKI
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]