| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146302547
Identifier: 146302547
GI number: 146302547
Start: 5835873
End: 5837144
Strand: Direct
Name: 146302547
Synonym: Fjoh_4820
Alternate gene names: NA
Gene position: 5835873-5837144 (Clockwise)
Preceding gene: 146302546
Following gene: 146302549
Centisome position: 95.72
GC content: 35.22
Gene sequence:
>1272_bases ATGACAAAAGAACGTTTAACCTCGCTGGATGTATTTAGAGGATTTACTATTTTATTGATGACGATAGTAAATAATCCCGG AAGCTGGTCTTCAATATATCCGCCATTAGAACACGCCGAATGGCACGGCTGTACACCAACTGATTTAGTATTTCCTTTTT TTGTTTTTATAATGGGAACTGCAATACCATTTGCAATGCCGGTAAAACATTTTGACGGAGCGGTTTTTAATAAAATTTTG GTTCGTTCACTGCGAATTTTCTGTTTAGGATTGTTCTTGAGCGTTTTCAGCAGAATCCATTTATTTGGTCTCGAAGGAAT TCCGTTATTAGGAGTAAGACTGGTTATTGCATTTGCAGTCGCTTATGCCCTTTTAGGTAACTTTTCGATGAAAGTAAAAA CCATTCTTGCGGTTGGAATTTTTATTATACTGCTTTCTTTAGCGTTTAGTGGTTTGGAACATTTTGAAGATACCAGAATA CCGGGCGTTTTACAGCGAATTGCAATCGTCTATTTCTTTGCTTCTATTCTATATCTAAAAACAAATTTAAAAACACAGCT TTGGGTCGTGGCGTCAATTTTAGTTATTTATTATCTTTTAATGGCTTTTGTTCCCGTTCCGGGATTTGGTCCGGCTAATT TTGATAAAGGAACCAATCTTGCTGCATGGCTGGATAACTTGGTTTTAAACGGACATTTATGGAGCGTTTCTAAAACCTGG GATCCTGAAGGAATTTTAAGTACACTACCAGCTATTGGCACCGGAATTCTTGGAATGTATATTGGCCAGTTATTGAACTT ACAGACAAACAGAACTGAAATTCTAAAAAAGACAGCAGTTACAGGAGTTATTTTATTAATTGGAGGTTTGCTTTGGAATA TCATTTTCCCAATCAATAAATCACTTTGGACTAGTTCTTATGTATTATACACTGCCGGAATCGCAACTTTGTGTTTAAGT TTATTGTATTATATAATCGACATTCAGGGTTATAAAAAATGGGCTAAACTGTTTTTAATCTGGGGAGTAAATCCTATGAT TGTGTTTTTCTTTTCGGGAATAATACCGAGGGTTCTTGGTTCTATTCAAGTTCAAAATCCGGAAACAGGCGGAGAAGAAA TCAGTGTATTAACTTTAATTTACAAACATGGAATTGCGCCTTGTTTTGAAAATCCATTAAATGCATCATTAGCTTATGCG CTTTCATACGCTGTTTTCTGGTCGGTAATACTTTGGATTTTCTATAAAAAGAAATTGATATTTAAGGTTTAA
Upstream 100 bases:
>100_bases AAGCAATAATAAAATAATTCAAGCCAAAAGTCTTGCTTCTTTATTCTTTCTTCTTCAAAAAATCTAAATTCTAAAATCTA ACATCTAAAATATTAACCCA
Downstream 100 bases:
>100_bases GATTTTCAACCGAGAATATTTCGTTTCTTCTCACAATAAAAATTATGGTAAACAAAAAAGGGAAGACATTAAACGTCTTC CCTTTTTATATAACTAACCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 423; Mature: 422
Protein sequence:
>423_residues MTKERLTSLDVFRGFTILLMTIVNNPGSWSSIYPPLEHAEWHGCTPTDLVFPFFVFIMGTAIPFAMPVKHFDGAVFNKIL VRSLRIFCLGLFLSVFSRIHLFGLEGIPLLGVRLVIAFAVAYALLGNFSMKVKTILAVGIFIILLSLAFSGLEHFEDTRI PGVLQRIAIVYFFASILYLKTNLKTQLWVVASILVIYYLLMAFVPVPGFGPANFDKGTNLAAWLDNLVLNGHLWSVSKTW DPEGILSTLPAIGTGILGMYIGQLLNLQTNRTEILKKTAVTGVILLIGGLLWNIIFPINKSLWTSSYVLYTAGIATLCLS LLYYIIDIQGYKKWAKLFLIWGVNPMIVFFFSGIIPRVLGSIQVQNPETGGEEISVLTLIYKHGIAPCFENPLNASLAYA LSYAVFWSVILWIFYKKKLIFKV
Sequences:
>Translated_423_residues MTKERLTSLDVFRGFTILLMTIVNNPGSWSSIYPPLEHAEWHGCTPTDLVFPFFVFIMGTAIPFAMPVKHFDGAVFNKIL VRSLRIFCLGLFLSVFSRIHLFGLEGIPLLGVRLVIAFAVAYALLGNFSMKVKTILAVGIFIILLSLAFSGLEHFEDTRI PGVLQRIAIVYFFASILYLKTNLKTQLWVVASILVIYYLLMAFVPVPGFGPANFDKGTNLAAWLDNLVLNGHLWSVSKTW DPEGILSTLPAIGTGILGMYIGQLLNLQTNRTEILKKTAVTGVILLIGGLLWNIIFPINKSLWTSSYVLYTAGIATLCLS LLYYIIDIQGYKKWAKLFLIWGVNPMIVFFFSGIIPRVLGSIQVQNPETGGEEISVLTLIYKHGIAPCFENPLNASLAYA LSYAVFWSVILWIFYKKKLIFKV >Mature_422_residues TKERLTSLDVFRGFTILLMTIVNNPGSWSSIYPPLEHAEWHGCTPTDLVFPFFVFIMGTAIPFAMPVKHFDGAVFNKILV RSLRIFCLGLFLSVFSRIHLFGLEGIPLLGVRLVIAFAVAYALLGNFSMKVKTILAVGIFIILLSLAFSGLEHFEDTRIP GVLQRIAIVYFFASILYLKTNLKTQLWVVASILVIYYLLMAFVPVPGFGPANFDKGTNLAAWLDNLVLNGHLWSVSKTWD PEGILSTLPAIGTGILGMYIGQLLNLQTNRTEILKKTAVTGVILLIGGLLWNIIFPINKSLWTSSYVLYTAGIATLCLSL LYYIIDIQGYKKWAKLFLIWGVNPMIVFFFSGIIPRVLGSIQVQNPETGGEEISVLTLIYKHGIAPCFENPLNASLAYAL SYAVFWSVILWIFYKKKLIFKV
Specific function: Unknown
COG id: COG4299
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI150378452, Length=469, Percent_Identity=26.6524520255864, Blast_Score=102, Evalue=7e-22, Organism=Drosophila melanogaster, GI24639786, Length=390, Percent_Identity=27.4358974358974, Blast_Score=96, Evalue=5e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47268; Mature: 47137
Theoretical pI: Translated: 9.63; Mature: 9.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKERLTSLDVFRGFTILLMTIVNNPGSWSSIYPPLEHAEWHGCTPTDLVFPFFVFIMGT CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHH AIPFAMPVKHFDGAVFNKILVRSLRIFCLGLFLSVFSRIHLFGLEGIPLLGVRLVIAFAV HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH AYALLGNFSMKVKTILAVGIFIILLSLAFSGLEHFEDTRIPGVLQRIAIVYFFASILYLK HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH TNLKTQLWVVASILVIYYLLMAFVPVPGFGPANFDKGTNLAAWLDNLVLNGHLWSVSKTW HCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCC DPEGILSTLPAIGTGILGMYIGQLLNLQTNRTEILKKTAVTGVILLIGGLLWNIIFPINK CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH SLWTSSYVLYTAGIATLCLSLLYYIIDIQGYKKWAKLFLIWGVNPMIVFFFSGIIPRVLG HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHCCCCHHHHHHHHHHHHHHHC SIQVQNPETGGEEISVLTLIYKHGIAPCFENPLNASLAYALSYAVFWSVILWIFYKKKLI CEEECCCCCCCCHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH FKV HCC >Mature Secondary Structure TKERLTSLDVFRGFTILLMTIVNNPGSWSSIYPPLEHAEWHGCTPTDLVFPFFVFIMGT CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHHH AIPFAMPVKHFDGAVFNKILVRSLRIFCLGLFLSVFSRIHLFGLEGIPLLGVRLVIAFAV HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH AYALLGNFSMKVKTILAVGIFIILLSLAFSGLEHFEDTRIPGVLQRIAIVYFFASILYLK HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH TNLKTQLWVVASILVIYYLLMAFVPVPGFGPANFDKGTNLAAWLDNLVLNGHLWSVSKTW HCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCC DPEGILSTLPAIGTGILGMYIGQLLNLQTNRTEILKKTAVTGVILLIGGLLWNIIFPINK CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH SLWTSSYVLYTAGIATLCLSLLYYIIDIQGYKKWAKLFLIWGVNPMIVFFFSGIIPRVLG HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEHHCCCCHHHHHHHHHHHHHHHC SIQVQNPETGGEEISVLTLIYKHGIAPCFENPLNASLAYALSYAVFWSVILWIFYKKKLI CEEECCCCCCCCHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH FKV HCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA