| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is yfeW [H]
Identifier: 146302534
GI number: 146302534
Start: 5810663
End: 5811967
Strand: Reverse
Name: yfeW [H]
Synonym: Fjoh_4807
Alternate gene names: 146302534
Gene position: 5811967-5810663 (Counterclockwise)
Preceding gene: 146302535
Following gene: 146302533
Centisome position: 95.33
GC content: 33.79
Gene sequence:
>1305_bases ATGAAAAAGATAACGGCAGGAATCATATTAATTTCCATGACCTTTTTAGGAATAAATGCTTATTCCCAGAAAAAATCAAA GAAATCTTTTGATGTAAAACGAAATGAAGTTTACATCGATTCGATGATGACAAATGCACTCGAAAAAGGATTTTTTCCCG GAGCACAGATTATAGTGGGAAATAAAGACGCTGTTTTAATTTCGAAAAATTATGGTTTTCAGGATTATTCGAAAAAACAG CCCGTAAAATCAGACGACGTTTATGATCTGGCTTCGATGTCGAAAGTTTTGGGAGCGACACTTGTGACCATGCGCTTAGT TGGAGAAGATAAAATAAAACTTACCGACAAAGTTGGAGATTTGGTTGAAGTTTATAAAAACACGCCAATTGCTGATTTAA CGTTTTTTGAATTATTAACGCATACTTCGGGATTAAAAGCGAGTATTACGTTTTACCAAAGTCTGCTTTCAACGCCAGAT GGTTTGCCTTTGTTAAGCAAAGAAAAATCAGATGTTTATCCTGATTTGTTTGATACGATGTATGTGAACAAGAATATTGT GTATGATGCCAATTATCTTTCGTTTACTCCCAAAGAAAATTGGGTTCAGATTTATAAAAATATGTGGTTAAATCCGGAGT TTTATAAAACGGTTTATGAGCAAATTTCAACTGCAAATACCAATACAAGAGGGAAATATGTTTACAGCGACCTGAATTTG CTTTTGGTAAAACAAATGATTGAAGCCAAAACAGGTTTGAAATTAGATGAATTAACGAAAGAAATTTATACGGAATTAGG AATCTCAAAAATTGGATATAATCCGTTAAAATGGACTTCTTTAGAAAATGTAACGCCGACAGAATTGGATAATTTCTTTA GAAAAGATACAATAAGAGGTTACGTTCATGATGAAGCTGCGGCGATTTTTGGCGGTGTTTCTGGAAATGCCGGATTGTTT GCTAATGCACAATCAATCTCAGTTATCTGTCAGATGCTGTTGAATGACGGAAAATATCAAGGAAAAGAAATTTTAAAAGC AACAGTTGTAAAAGAATTTACAAGTTCGCCTCTCACCAAAGAAGGGATTTACCGCGGACTTGGTTTTGATAAACGAAAAC CTGATGAGTTTTTTAAAGCTAATGATTTTGGGCACACAGGTTTTACAGGAACTTTTTTCTTTATGAATCCAGATACGAAC AGATTTCTAATTATTCTGACCAATCGCGTAAACCCAACGAGAACAAACAGATTGATGTATAAAGATGATTTTAGTGCTAA AATTTGGAGGCAGATTAATAATTAA
Upstream 100 bases:
>100_bases TTATCCAAAACAGCCTGTAAAAGCAGTAAAAATTGTCATTACAGGAACCAACAACGAACCTCTTATGGCAGGACAGGACA TAAGAATTAATCCGTAGAAT
Downstream 100 bases:
>100_bases TTTTTTTAGCCACAGATTAAACAGATTAGAAGGATTTTTTTCGCCAGAACCCGAGCGATAGCAAACAGTCGAAGCAATTC AAGAATTTCCACGAATTAAA
Product: beta-lactamase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 434; Mature: 434
Protein sequence:
>434_residues MKKITAGIILISMTFLGINAYSQKKSKKSFDVKRNEVYIDSMMTNALEKGFFPGAQIIVGNKDAVLISKNYGFQDYSKKQ PVKSDDVYDLASMSKVLGATLVTMRLVGEDKIKLTDKVGDLVEVYKNTPIADLTFFELLTHTSGLKASITFYQSLLSTPD GLPLLSKEKSDVYPDLFDTMYVNKNIVYDANYLSFTPKENWVQIYKNMWLNPEFYKTVYEQISTANTNTRGKYVYSDLNL LLVKQMIEAKTGLKLDELTKEIYTELGISKIGYNPLKWTSLENVTPTELDNFFRKDTIRGYVHDEAAAIFGGVSGNAGLF ANAQSISVICQMLLNDGKYQGKEILKATVVKEFTSSPLTKEGIYRGLGFDKRKPDEFFKANDFGHTGFTGTFFFMNPDTN RFLIILTNRVNPTRTNRLMYKDDFSAKIWRQINN
Sequences:
>Translated_434_residues MKKITAGIILISMTFLGINAYSQKKSKKSFDVKRNEVYIDSMMTNALEKGFFPGAQIIVGNKDAVLISKNYGFQDYSKKQ PVKSDDVYDLASMSKVLGATLVTMRLVGEDKIKLTDKVGDLVEVYKNTPIADLTFFELLTHTSGLKASITFYQSLLSTPD GLPLLSKEKSDVYPDLFDTMYVNKNIVYDANYLSFTPKENWVQIYKNMWLNPEFYKTVYEQISTANTNTRGKYVYSDLNL LLVKQMIEAKTGLKLDELTKEIYTELGISKIGYNPLKWTSLENVTPTELDNFFRKDTIRGYVHDEAAAIFGGVSGNAGLF ANAQSISVICQMLLNDGKYQGKEILKATVVKEFTSSPLTKEGIYRGLGFDKRKPDEFFKANDFGHTGFTGTFFFMNPDTN RFLIILTNRVNPTRTNRLMYKDDFSAKIWRQINN >Mature_434_residues MKKITAGIILISMTFLGINAYSQKKSKKSFDVKRNEVYIDSMMTNALEKGFFPGAQIIVGNKDAVLISKNYGFQDYSKKQ PVKSDDVYDLASMSKVLGATLVTMRLVGEDKIKLTDKVGDLVEVYKNTPIADLTFFELLTHTSGLKASITFYQSLLSTPD GLPLLSKEKSDVYPDLFDTMYVNKNIVYDANYLSFTPKENWVQIYKNMWLNPEFYKTVYEQISTANTNTRGKYVYSDLNL LLVKQMIEAKTGLKLDELTKEIYTELGISKIGYNPLKWTSLENVTPTELDNFFRKDTIRGYVHDEAAAIFGGVSGNAGLF ANAQSISVICQMLLNDGKYQGKEILKATVVKEFTSSPLTKEGIYRGLGFDKRKPDEFFKANDFGHTGFTGTFFFMNPDTN RFLIILTNRVNPTRTNRLMYKDDFSAKIWRQINN
Specific function: Unknown
COG id: COG1680
COG function: function code V; Beta-lactamase class C and other penicillin binding proteins
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0214 family [H]
Homologues:
Organism=Escherichia coli, GI87082101, Length=417, Percent_Identity=27.3381294964029, Blast_Score=109, Evalue=3e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001466 - InterPro: IPR022849 [H]
Pfam domain/function: PF00144 Beta-lactamase [H]
EC number: NA
Molecular weight: Translated: 49257; Mature: 49257
Theoretical pI: Translated: 9.39; Mature: 9.39
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKITAGIILISMTFLGINAYSQKKSKKSFDVKRNEVYIDSMMTNALEKGFFPGAQIIVG CCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHCCCCCCEEEEC NKDAVLISKNYGFQDYSKKQPVKSDDVYDLASMSKVLGATLVTMRLVGEDKIKLTDKVGD CCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCEEEHHHHHH LVEVYKNTPIADLTFFELLTHTSGLKASITFYQSLLSTPDGLPLLSKEKSDVYPDLFDTM HHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH YVNKNIVYDANYLSFTPKENWVQIYKNMWLNPEFYKTVYEQISTANTNTRGKYVYSDLNL EECCCEEEECCEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCEEECHHHH LLVKQMIEAKTGLKLDELTKEIYTELGISKIGYNPLKWTSLENVTPTELDNFFRKDTIRG HHHHHHHHHHHCCCHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCE YVHDEAAAIFGGVSGNAGLFANAQSISVICQMLLNDGKYQGKEILKATVVKEFTSSPLTK EECCCHHHHCCCCCCCCCEEECHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCH EGIYRGLGFDKRKPDEFFKANDFGHTGFTGTFFFMNPDTNRFLIILTNRVNPTRTNRLMY HHHHHCCCCCCCCCHHHHCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCCCCEEEE KDDFSAKIWRQINN ECCCHHHHHHHHCC >Mature Secondary Structure MKKITAGIILISMTFLGINAYSQKKSKKSFDVKRNEVYIDSMMTNALEKGFFPGAQIIVG CCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEEHHHHHHHHHHHCCCCCCEEEEC NKDAVLISKNYGFQDYSKKQPVKSDDVYDLASMSKVLGATLVTMRLVGEDKIKLTDKVGD CCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCEEEHHHHHH LVEVYKNTPIADLTFFELLTHTSGLKASITFYQSLLSTPDGLPLLSKEKSDVYPDLFDTM HHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHH YVNKNIVYDANYLSFTPKENWVQIYKNMWLNPEFYKTVYEQISTANTNTRGKYVYSDLNL EECCCEEEECCEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCEEECHHHH LLVKQMIEAKTGLKLDELTKEIYTELGISKIGYNPLKWTSLENVTPTELDNFFRKDTIRG HHHHHHHHHHHCCCHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCE YVHDEAAAIFGGVSGNAGLFANAQSISVICQMLLNDGKYQGKEILKATVVKEFTSSPLTK EECCCHHHHCCCCCCCCCEEECHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCH EGIYRGLGFDKRKPDEFFKANDFGHTGFTGTFFFMNPDTNRFLIILTNRVNPTRTNRLMY HHHHHCCCCCCCCCHHHHCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCCCCCCCEEEE KDDFSAKIWRQINN ECCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]