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The map label for this gene is rhaS [H]

Identifier: 146302342

GI number: 146302342

Start: 5579714

End: 5580559

Strand: Reverse

Name: rhaS [H]

Synonym: Fjoh_4615

Alternate gene names: 146302342

Gene position: 5580559-5579714 (Counterclockwise)

Preceding gene: 146302347

Following gene: 146302338

Centisome position: 91.53

GC content: 32.98

Gene sequence:

>846_bases
ATGAAAAAAGAAAACTTATATGAACCTTTTACGGTTTCTTTTGAAACGCTGGATGAATATCCGGATGTTGGAGATCGTCA
TAATTTTTTTGAACTGGTTTACATTTTGGAAGGTACAGGAAGACAGTGTATTAATAAGAATATATTTGAGTATGATCCAG
GGCATTTGTTTTTATTGACGCCTGAGGATTGTCATAATTTTACAATTGAAACCAAAACGAAATTTTTCTTTTTGAGGTTT
AATGATATTTATTTGAAAAATTCGAGTCTGCAGAATGAAAATATTCAGCGATTAGAATATATACTTCAAAACGCCAATCA
TCAGCCGGGCTGTATTCTTAAAAATGATCCTGATAAGTGTCTGGTAAAAGTAATGATTGAAGCAATCTGCCGAGAACATC
AGGATAAAGATGTTTACAATCAGGAATTGATTCAGCAGTTGGTTAATACACTGATTATTATTGTGGCGAGAAATATCGCG
AAATACTTGCCTGAACAAGTAACCATAAATACTGAGGCTAAAGCGATGGATATTCTACAATATATTCAGAACAATATCTA
TTATCCTGAAAAAATCAAAGCGGAATCTATTAGTGATTATTTTGGGATTTCGAATACGTATTTAGGACGTTATTTTAAGA
AACACGCCAGCGAAACGATGCAACAGTATATTAGCAACTACAAAACGAAACTGATTGAACATCGTTTGCAATTTAGCGAG
AAACGTATTAACGAAATTGCTTATGAATTTGGTTTTACGGATGAAAGCCATTTCAATAAGTTTTTTAGAAAGCAAAAAGG
CTATAGTCCGTCTGAGTTTAGAAAGACGATTCGATTGAGTGCTTAG

Upstream 100 bases:

>100_bases
GTTTAAAATTGATGAGGCAAAATTATACTGTTTTTATGATTCTTATTTGGTATATATTTGTCTTTTTTAGGTATATTTGC
ATCTTCAAATAAATGGAATT

Downstream 100 bases:

>100_bases
TTTTTTTTGCCACAGATTAAGAGGATTTTAAAAGATTTTCTTTAAAATTGAATAATTTCTCTCGTAGATTTTGCATATTT
ATTTCAAAAAATCCGTTTAA

Product: helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: L-rhamnose operon regulatory protein rhaS [H]

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MKKENLYEPFTVSFETLDEYPDVGDRHNFFELVYILEGTGRQCINKNIFEYDPGHLFLLTPEDCHNFTIETKTKFFFLRF
NDIYLKNSSLQNENIQRLEYILQNANHQPGCILKNDPDKCLVKVMIEAICREHQDKDVYNQELIQQLVNTLIIIVARNIA
KYLPEQVTINTEAKAMDILQYIQNNIYYPEKIKAESISDYFGISNTYLGRYFKKHASETMQQYISNYKTKLIEHRLQFSE
KRINEIAYEFGFTDESHFNKFFRKQKGYSPSEFRKTIRLSA

Sequences:

>Translated_281_residues
MKKENLYEPFTVSFETLDEYPDVGDRHNFFELVYILEGTGRQCINKNIFEYDPGHLFLLTPEDCHNFTIETKTKFFFLRF
NDIYLKNSSLQNENIQRLEYILQNANHQPGCILKNDPDKCLVKVMIEAICREHQDKDVYNQELIQQLVNTLIIIVARNIA
KYLPEQVTINTEAKAMDILQYIQNNIYYPEKIKAESISDYFGISNTYLGRYFKKHASETMQQYISNYKTKLIEHRLQFSE
KRINEIAYEFGFTDESHFNKFFRKQKGYSPSEFRKTIRLSA
>Mature_281_residues
MKKENLYEPFTVSFETLDEYPDVGDRHNFFELVYILEGTGRQCINKNIFEYDPGHLFLLTPEDCHNFTIETKTKFFFLRF
NDIYLKNSSLQNENIQRLEYILQNANHQPGCILKNDPDKCLVKVMIEAICREHQDKDVYNQELIQQLVNTLIIIVARNIA
KYLPEQVTINTEAKAMDILQYIQNNIYYPEKIKAESISDYFGISNTYLGRYFKKHASETMQQYISNYKTKLIEHRLQFSE
KRINEIAYEFGFTDESHFNKFFRKQKGYSPSEFRKTIRLSA

Specific function: Activates expression of the rhaBAD and rhaT operons [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 HTH araC/xylS-type DNA-binding domains [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=106, Percent_Identity=26.4150943396226, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33440; Mature: 33440

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKENLYEPFTVSFETLDEYPDVGDRHNFFELVYILEGTGRQCINKNIFEYDPGHLFLLT
CCCCCCCCCCEEEHHHHHCCCCCCCCCCCEEEEEEECCCCHHHHCCCCCEECCCEEEEEC
PEDCHNFTIETKTKFFFLRFNDIYLKNSSLQNENIQRLEYILQNANHQPGCILKNDPDKC
CCCCCCCEEEECCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEECCCHHHH
LVKVMIEAICREHQDKDVYNQELIQQLVNTLIIIVARNIAKYLPEQVTINTEAKAMDILQ
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHH
YIQNNIYYPEKIKAESISDYFGISNTYLGRYFKKHASETMQQYISNYKTKLIEHRLQFSE
HHHHCCCCCCHHCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KRINEIAYEFGFTDESHFNKFFRKQKGYSPSEFRKTIRLSA
HHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MKKENLYEPFTVSFETLDEYPDVGDRHNFFELVYILEGTGRQCINKNIFEYDPGHLFLLT
CCCCCCCCCCEEEHHHHHCCCCCCCCCCCEEEEEEECCCCHHHHCCCCCEECCCEEEEEC
PEDCHNFTIETKTKFFFLRFNDIYLKNSSLQNENIQRLEYILQNANHQPGCILKNDPDKC
CCCCCCCEEEECCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCEEECCCHHHH
LVKVMIEAICREHQDKDVYNQELIQQLVNTLIIIVARNIAKYLPEQVTINTEAKAMDILQ
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHH
YIQNNIYYPEKIKAESISDYFGISNTYLGRYFKKHASETMQQYISNYKTKLIEHRLQFSE
HHHHCCCCCCHHCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KRINEIAYEFGFTDESHFNKFFRKQKGYSPSEFRKTIRLSA
HHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA