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The map label for this gene is ykpA [H]

Identifier: 146302277

GI number: 146302277

Start: 5494704

End: 5496323

Strand: Reverse

Name: ykpA [H]

Synonym: Fjoh_4550

Alternate gene names: 146302277

Gene position: 5496323-5494704 (Counterclockwise)

Preceding gene: 146302278

Following gene: 146302274

Centisome position: 90.15

GC content: 36.85

Gene sequence:

>1620_bases
ATGTTAACAGTCAATAATTTATCAGTTCAGTTTGGTAAAAGAATTTTATTCGACGAAGTAAATACTACGTTTACTCACGG
AAATATTTACGGCGTTATTGGAGCAAATGGTGCAGGAAAATCTACTTTCTTAAAAGTGATTTCGGGCGATATTGATCCAA
CTTCTGGTCACATTCATTTAGAGCCGGGAAAACGTATGTCGGTTTTAAACCAGAACCACAACATGTTCGACGAGCATACT
GTTTTGGAAACCGTTTTAATGGGAAATAAAGTTCTGTACGCTGTTAAAAAAGAAATGGATGAACTTTATTTAGATTATAA
TGATGCCAATGCAGACAGAATAGGGGAGTTACAAGTTCAGTTTGAAGAAATGAACGGATGGAATGCCGATTCTGATGCTG
CAGCGATGTTGTCTAACTTAGGAATCACAGAAGCAGATCATTATACTTTAATGGCCGATATGGAAGGAAAAATGAAAGTA
CGTGTGCTTTTGGCGCAGGCACTTTTTGGAAATCCTGACTTGCTTATTATGGATGAGCCTACCAACGATTTGGATTTCGA
GACAATCGCTTGGTTAGAAAACTTCTTAGCAAACTACGAAAACACTGTAATTGTGGTATCTCACGACCGTCACTTTTTAG
ATGCGGTTTGTACACATATTTCTGATATTGATTTTGGGAAAATCAATCACTATTCAGGAAACTATACGTTCTGGTACGAG
TCCAGCCAATTAGCGGCAAAACAGCGTGCACAGCAAAACAAAAAAGCTGAAGAGAAGAAACAAGAGCTGGAAGAATTTAT
TCGTCGTTTTAGTGCAAACGTGGCGAAATCGAAACAAGCAACTTCTCGTAAAAAAATGATTTCGAAATTAAATATTTCTG
AAATTAAACCTTCAAGCCGTCGTTATCCAGCAATTATCTTCGATCAGGATCGTGAAGCAGGAGATCAGATTTTAAATGTA
GAACATTTGTCTGCTTCTGTAGACGGAGAAGTTCTTTTTAAAGATGTGCATTTGAATATGGCAAAAGGCGATAAAATCGT
TCTTTTCTCTAAAGATTCACGTGCAACAACTGCTTTCTACGAAATCTTAAACGGAGAACAAAAAGCAGATTCTGGAACTT
TCGATTGGGGAATTACAACCAACCAAGCCTATTTACCAGCTGAAAACCATGATTTCTTCGAAAATGATTTAACTTTAGTA
GACTGGTTACGTCAGTACGCTAAAACAGAAGAAGAGCGTGATGAGGTATTTATTAGAGGTTTCTTAGGAAAAATGATTTT
CTCTGGAGAAGAAGCATTAAAAACGTCTAGGGTTTTATCTGGGGGAGAAAAAGTACGTTGTATGCTTTCTAGAATGATGA
TGGAGCGTGCAAACGTTTTAATGCTTGATGAGCCAACAAACCACTTAGATTTGGAATCTATTACAGCTTTCAACAACTCA
TTGAAAAACTTTAAAGGTTCTGTAATCTTTACAACACATGACCACGAGTTCGCGCAGACTGTTGGTAACAGAATCGTAGA
ATTAACACCAAACGGAGTTATCGATCGTTACATGACATTTGACGAATATCTTGATGATGAAAAAATTCAGGAACAAAGAA
AAAAGATGTACAATCTTTAA

Upstream 100 bases:

>100_bases
AACCTCTCAGCAGCAGCATAAAAAACCTTAGCACCTTAGCATCTTTGCAACTTAGAACCTTTTTCACTACTTTTGCACCA
AATTAATTAAAAAGACATTC

Downstream 100 bases:

>100_bases
TCTTTAAAAATTATAATATTAAAAATCCCAAATTCCAGATTAAACTTGGAGTTTGGGATTTTAATTTTTGGTTTAAAAAG
AAAATCCCCGCTATGAAAAT

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 539; Mature: 539

Protein sequence:

>539_residues
MLTVNNLSVQFGKRILFDEVNTTFTHGNIYGVIGANGAGKSTFLKVISGDIDPTSGHIHLEPGKRMSVLNQNHNMFDEHT
VLETVLMGNKVLYAVKKEMDELYLDYNDANADRIGELQVQFEEMNGWNADSDAAAMLSNLGITEADHYTLMADMEGKMKV
RVLLAQALFGNPDLLIMDEPTNDLDFETIAWLENFLANYENTVIVVSHDRHFLDAVCTHISDIDFGKINHYSGNYTFWYE
SSQLAAKQRAQQNKKAEEKKQELEEFIRRFSANVAKSKQATSRKKMISKLNISEIKPSSRRYPAIIFDQDREAGDQILNV
EHLSASVDGEVLFKDVHLNMAKGDKIVLFSKDSRATTAFYEILNGEQKADSGTFDWGITTNQAYLPAENHDFFENDLTLV
DWLRQYAKTEEERDEVFIRGFLGKMIFSGEEALKTSRVLSGGEKVRCMLSRMMMERANVLMLDEPTNHLDLESITAFNNS
LKNFKGSVIFTTHDHEFAQTVGNRIVELTPNGVIDRYMTFDEYLDDEKIQEQRKKMYNL

Sequences:

>Translated_539_residues
MLTVNNLSVQFGKRILFDEVNTTFTHGNIYGVIGANGAGKSTFLKVISGDIDPTSGHIHLEPGKRMSVLNQNHNMFDEHT
VLETVLMGNKVLYAVKKEMDELYLDYNDANADRIGELQVQFEEMNGWNADSDAAAMLSNLGITEADHYTLMADMEGKMKV
RVLLAQALFGNPDLLIMDEPTNDLDFETIAWLENFLANYENTVIVVSHDRHFLDAVCTHISDIDFGKINHYSGNYTFWYE
SSQLAAKQRAQQNKKAEEKKQELEEFIRRFSANVAKSKQATSRKKMISKLNISEIKPSSRRYPAIIFDQDREAGDQILNV
EHLSASVDGEVLFKDVHLNMAKGDKIVLFSKDSRATTAFYEILNGEQKADSGTFDWGITTNQAYLPAENHDFFENDLTLV
DWLRQYAKTEEERDEVFIRGFLGKMIFSGEEALKTSRVLSGGEKVRCMLSRMMMERANVLMLDEPTNHLDLESITAFNNS
LKNFKGSVIFTTHDHEFAQTVGNRIVELTPNGVIDRYMTFDEYLDDEKIQEQRKKMYNL
>Mature_539_residues
MLTVNNLSVQFGKRILFDEVNTTFTHGNIYGVIGANGAGKSTFLKVISGDIDPTSGHIHLEPGKRMSVLNQNHNMFDEHT
VLETVLMGNKVLYAVKKEMDELYLDYNDANADRIGELQVQFEEMNGWNADSDAAAMLSNLGITEADHYTLMADMEGKMKV
RVLLAQALFGNPDLLIMDEPTNDLDFETIAWLENFLANYENTVIVVSHDRHFLDAVCTHISDIDFGKINHYSGNYTFWYE
SSQLAAKQRAQQNKKAEEKKQELEEFIRRFSANVAKSKQATSRKKMISKLNISEIKPSSRRYPAIIFDQDREAGDQILNV
EHLSASVDGEVLFKDVHLNMAKGDKIVLFSKDSRATTAFYEILNGEQKADSGTFDWGITTNQAYLPAENHDFFENDLTLV
DWLRQYAKTEEERDEVFIRGFLGKMIFSGEEALKTSRVLSGGEKVRCMLSRMMMERANVLMLDEPTNHLDLESITAFNNS
LKNFKGSVIFTTHDHEFAQTVGNRIVELTPNGVIDRYMTFDEYLDDEKIQEQRKKMYNL

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=531, Percent_Identity=28.6252354048964, Blast_Score=228, Evalue=1e-59,
Organism=Homo sapiens, GI27881506, Length=508, Percent_Identity=26.3779527559055, Blast_Score=187, Evalue=2e-47,
Organism=Homo sapiens, GI10947137, Length=506, Percent_Identity=26.0869565217391, Blast_Score=187, Evalue=2e-47,
Organism=Homo sapiens, GI10947135, Length=522, Percent_Identity=26.6283524904215, Blast_Score=148, Evalue=1e-35,
Organism=Homo sapiens, GI69354671, Length=522, Percent_Identity=26.6283524904215, Blast_Score=148, Evalue=1e-35,
Organism=Homo sapiens, GI105990541, Length=212, Percent_Identity=27.8301886792453, Blast_Score=68, Evalue=2e-11,
Organism=Escherichia coli, GI1787041, Length=533, Percent_Identity=41.2757973733583, Blast_Score=462, Evalue=1e-131,
Organism=Escherichia coli, GI1789751, Length=503, Percent_Identity=29.4234592445328, Blast_Score=251, Evalue=6e-68,
Organism=Escherichia coli, GI2367384, Length=522, Percent_Identity=29.3103448275862, Blast_Score=231, Evalue=1e-61,
Organism=Escherichia coli, GI1787182, Length=544, Percent_Identity=27.5735294117647, Blast_Score=199, Evalue=5e-52,
Organism=Escherichia coli, GI1787029, Length=232, Percent_Identity=26.7241379310345, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1786319, Length=215, Percent_Identity=24.6511627906977, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1788225, Length=271, Percent_Identity=22.5092250922509, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1790525, Length=508, Percent_Identity=21.6535433070866, Blast_Score=65, Evalue=8e-12,
Organism=Escherichia coli, GI48994943, Length=239, Percent_Identity=24.6861924686192, Blast_Score=63, Evalue=5e-11,
Organism=Escherichia coli, GI1789586, Length=217, Percent_Identity=26.2672811059908, Blast_Score=62, Evalue=1e-10,
Organism=Caenorhabditis elegans, GI17553372, Length=550, Percent_Identity=27.8181818181818, Blast_Score=209, Evalue=2e-54,
Organism=Caenorhabditis elegans, GI17555318, Length=517, Percent_Identity=25.531914893617, Blast_Score=192, Evalue=3e-49,
Organism=Caenorhabditis elegans, GI17559834, Length=521, Percent_Identity=25.5278310940499, Blast_Score=185, Evalue=6e-47,
Organism=Saccharomyces cerevisiae, GI6321121, Length=540, Percent_Identity=27.7777777777778, Blast_Score=197, Evalue=4e-51,
Organism=Saccharomyces cerevisiae, GI6320874, Length=525, Percent_Identity=27.8095238095238, Blast_Score=196, Evalue=1e-50,
Organism=Saccharomyces cerevisiae, GI6325030, Length=236, Percent_Identity=28.3898305084746, Blast_Score=101, Evalue=4e-22,
Organism=Saccharomyces cerevisiae, GI6323278, Length=241, Percent_Identity=26.1410788381743, Blast_Score=92, Evalue=3e-19,
Organism=Saccharomyces cerevisiae, GI6324314, Length=240, Percent_Identity=27.0833333333333, Blast_Score=91, Evalue=5e-19,
Organism=Drosophila melanogaster, GI24666836, Length=535, Percent_Identity=28.785046728972, Blast_Score=219, Evalue=4e-57,
Organism=Drosophila melanogaster, GI24642252, Length=515, Percent_Identity=25.0485436893204, Blast_Score=191, Evalue=1e-48,
Organism=Drosophila melanogaster, GI18859989, Length=515, Percent_Identity=25.0485436893204, Blast_Score=191, Evalue=1e-48,
Organism=Drosophila melanogaster, GI24641342, Length=541, Percent_Identity=24.2144177449168, Blast_Score=167, Evalue=1e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 61449; Mature: 61449

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTVNNLSVQFGKRILFDEVNTTFTHGNIYGVIGANGAGKSTFLKVISGDIDPTSGHIHL
CEEECCCHHHHCCCCEEECCCCEEECCCEEEEEECCCCCHHHHHHHHCCCCCCCCCEEEE
EPGKRMSVLNQNHNMFDEHTVLETVLMGNKVLYAVKKEMDELYLDYNDANADRIGELQVQ
CCCCCCHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHEEECCCCCCCCEEEEEEE
FEEMNGWNADSDAAAMLSNLGITEADHYTLMADMEGKMKVRVLLAQALFGNPDLLIMDEP
EEECCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECC
TNDLDFETIAWLENFLANYENTVIVVSHDRHFLDAVCTHISDIDFGKINHYSGNYTFWYE
CCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCEEECCCCEEEEEC
SSQLAAKQRAQQNKKAEEKKQELEEFIRRFSANVAKSKQATSRKKMISKLNISEIKPSSR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCC
RYPAIIFDQDREAGDQILNVEHLSASVDGEVLFKDVHLNMAKGDKIVLFSKDSRATTAFY
CCCEEEEECCCCCHHHEEEHHHHCCCCCCEEEEEEEEEEECCCCEEEEEECCCCHHHHHH
EILNGEQKADSGTFDWGITTNQAYLPAENHDFFENDLTLVDWLRQYAKTEEERDEVFIRG
HHHCCCCCCCCCCEECCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHH
FLGKMIFSGEEALKTSRVLSGGEKVRCMLSRMMMERANVLMLDEPTNHLDLESITAFNNS
HHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHH
LKNFKGSVIFTTHDHEFAQTVGNRIVELTPNGVIDRYMTFDEYLDDEKIQEQRKKMYNL
HHHCCCCEEEEECCHHHHHHHCCEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MLTVNNLSVQFGKRILFDEVNTTFTHGNIYGVIGANGAGKSTFLKVISGDIDPTSGHIHL
CEEECCCHHHHCCCCEEECCCCEEECCCEEEEEECCCCCHHHHHHHHCCCCCCCCCEEEE
EPGKRMSVLNQNHNMFDEHTVLETVLMGNKVLYAVKKEMDELYLDYNDANADRIGELQVQ
CCCCCCHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHEEECCCCCCCCEEEEEEE
FEEMNGWNADSDAAAMLSNLGITEADHYTLMADMEGKMKVRVLLAQALFGNPDLLIMDEP
EEECCCCCCCCHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECC
TNDLDFETIAWLENFLANYENTVIVVSHDRHFLDAVCTHISDIDFGKINHYSGNYTFWYE
CCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCEEECCCCEEEEEC
SSQLAAKQRAQQNKKAEEKKQELEEFIRRFSANVAKSKQATSRKKMISKLNISEIKPSSR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCC
RYPAIIFDQDREAGDQILNVEHLSASVDGEVLFKDVHLNMAKGDKIVLFSKDSRATTAFY
CCCEEEEECCCCCHHHEEEHHHHCCCCCCEEEEEEEEEEECCCCEEEEEECCCCHHHHHH
EILNGEQKADSGTFDWGITTNQAYLPAENHDFFENDLTLVDWLRQYAKTEEERDEVFIRG
HHHCCCCCCCCCCEECCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHH
FLGKMIFSGEEALKTSRVLSGGEKVRCMLSRMMMERANVLMLDEPTNHLDLESITAFNNS
HHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHH
LKNFKGSVIFTTHDHEFAQTVGNRIVELTPNGVIDRYMTFDEYLDDEKIQEQRKKMYNL
HHHCCCCEEEEECCHHHHHHHCCEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]