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The map label for this gene is 146302242

Identifier: 146302242

GI number: 146302242

Start: 5456172

End: 5457581

Strand: Reverse

Name: 146302242

Synonym: Fjoh_4515

Alternate gene names: NA

Gene position: 5457581-5456172 (Counterclockwise)

Preceding gene: 146302245

Following gene: 146302240

Centisome position: 89.51

GC content: 34.82

Gene sequence:

>1410_bases
ATGAATTCATCCGCATTTTACGGCGTTTTGCAAAGAAGATTTCCTTTTGCACCAACTTACAAACAGGATATTTTTTTTCA
AAAAATTGCTATTTTTCTAACAGAACCGGCTAACGACACAATTTTTGTGCTGAAAGGATATGCCGGAACAGGAAAAACAA
CCGTGATTTCGACGATTGTAAATAATCTGGGTGATATTAATAAAAAGTTTGTCCTATTGGCACCAACAGGACGCGCGGCA
AAAGTAATTGCCAATTATTCGAATACGGCTGCTTTTACAATTCATAAAAAAATATATTTTCCCAAAAAATCATCGGGTGG
CGGCGTGGCTTTTACCAGACAAGTCAACAAACATAAAAACACCATTTTTATAGTCGATGAGGCTTCGATGATTTCAGATA
GTACTTTAGACAGCGGTTCACTTCTGGATGATTTGATCTCATACGTGTATTCTGGAAACAACTGTAAAATGATTCTTTTG
GGAGATACGGCGCAGCTTCCGCCGGTAAATTTAGATATCAGTCCGGCCTTAGATACACATACTTTGGGAGTTCATTATGA
CAAAGAAATCGAACATATCGAACTTGATGAAGTTATGCGTCAGGAAGAAAGTTCCGGAATTTTATTTAACGCAACTGAAT
TAAGGGAATTATTAAAAGAAAGTTTTATTGCTGAATTCAGATTCAATGTCAAAAAGTTCAAAGATATCGTTCGGTTAACG
GATGGTTATGATATTCAGGATGCCATAAATACAGCCTATAGCAATTATAGTATTGAAGATACGGCTTTTATTGTTCGTTC
TAATAAAAGAGCAAACCAGTACAATGAACAAATCAGAACCCGAATTTTGTTTAAAGAAAGCGAACTTTCTGTTGGTGATT
TTTTGATGGTTGTAAAGAACAATTATTTCTGGCTTAAAGAAACTGATGAAGCCGGATTTATTGCAAATGGTGATATCATT
GAAGTTTTAGAATTATTTGGAATCAAAGAACTGTACGGATTTACTTTTGCGAAAGTAAAAATCAGAATGGTTGATTATCC
TGATCAAAAACCTTTTGAAACGGTTTTAATTTTAGATACGATAAAAAGTGAATCTCCATCGTTGACATACGAAGAATCAA
ATCGCCTATATGAAGAAGTGATGAAAGATTATGAAGATGAGTCAACAAAGTACAAAAGATTTCAAAAGGTTAAGGAAAAT
GAATATTTTAATGGTTTACAGGTAAAGTTTTCATACGCGATAACGTGTCATAAATCGCAGGGAGGGCAGTGGAATACAGT
TTTTATAGAACAGCCGTATCTGCCAAACGGAATTGACCACGATTATATTCGATGGCTCTACACGGCCATGACTCGTGCCA
AAAACAAATTGTATTTGATTGGTTTTAAAGACGAAAGTTTTGAAGAATAA

Upstream 100 bases:

>100_bases
ATATTGAATTTAACAATTGCATTTTAGTTTAAGTTCTAATTGATTTTTGCAATTGGTATTGCGATTAAAAAGAACGAACT
TTGTGTTTCAAATTTACCTT

Downstream 100 bases:

>100_bases
AAACACAAATTTCACAGATTTGCACGAATTTTTTAAGATATAGATAAGTGTAAATCTGTGAAAATTGTGTCGTAATATCC
AGAGGATTTATTTTCCTTTT

Product: exonuclease V subunit alpha

Products: NA

Alternate protein names: Exonuclease V Subunit Alpha; ATP-Dependent ExoDNAse; ATP-Dependent Exodeoxyribonuclease; Helicase RecD/TraA Family; RecD-Like Exodeoxyribonuclease; ATP-Dependent Exodnase; Deoxyribonuclease; ATP-Dependent ExoDNAse Alpha Subunit; Exodeoxyribonuclease V; ATP-Dependent ExoDNAse Subunit Alpha; Ribonuclease H; AAA ATPase; Helicase Family Protein; RecD/TraA Family Helicase; DNA Helicase

Number of amino acids: Translated: 469; Mature: 469

Protein sequence:

>469_residues
MNSSAFYGVLQRRFPFAPTYKQDIFFQKIAIFLTEPANDTIFVLKGYAGTGKTTVISTIVNNLGDINKKFVLLAPTGRAA
KVIANYSNTAAFTIHKKIYFPKKSSGGGVAFTRQVNKHKNTIFIVDEASMISDSTLDSGSLLDDLISYVYSGNNCKMILL
GDTAQLPPVNLDISPALDTHTLGVHYDKEIEHIELDEVMRQEESSGILFNATELRELLKESFIAEFRFNVKKFKDIVRLT
DGYDIQDAINTAYSNYSIEDTAFIVRSNKRANQYNEQIRTRILFKESELSVGDFLMVVKNNYFWLKETDEAGFIANGDII
EVLELFGIKELYGFTFAKVKIRMVDYPDQKPFETVLILDTIKSESPSLTYEESNRLYEEVMKDYEDESTKYKRFQKVKEN
EYFNGLQVKFSYAITCHKSQGGQWNTVFIEQPYLPNGIDHDYIRWLYTAMTRAKNKLYLIGFKDESFEE

Sequences:

>Translated_469_residues
MNSSAFYGVLQRRFPFAPTYKQDIFFQKIAIFLTEPANDTIFVLKGYAGTGKTTVISTIVNNLGDINKKFVLLAPTGRAA
KVIANYSNTAAFTIHKKIYFPKKSSGGGVAFTRQVNKHKNTIFIVDEASMISDSTLDSGSLLDDLISYVYSGNNCKMILL
GDTAQLPPVNLDISPALDTHTLGVHYDKEIEHIELDEVMRQEESSGILFNATELRELLKESFIAEFRFNVKKFKDIVRLT
DGYDIQDAINTAYSNYSIEDTAFIVRSNKRANQYNEQIRTRILFKESELSVGDFLMVVKNNYFWLKETDEAGFIANGDII
EVLELFGIKELYGFTFAKVKIRMVDYPDQKPFETVLILDTIKSESPSLTYEESNRLYEEVMKDYEDESTKYKRFQKVKEN
EYFNGLQVKFSYAITCHKSQGGQWNTVFIEQPYLPNGIDHDYIRWLYTAMTRAKNKLYLIGFKDESFEE
>Mature_469_residues
MNSSAFYGVLQRRFPFAPTYKQDIFFQKIAIFLTEPANDTIFVLKGYAGTGKTTVISTIVNNLGDINKKFVLLAPTGRAA
KVIANYSNTAAFTIHKKIYFPKKSSGGGVAFTRQVNKHKNTIFIVDEASMISDSTLDSGSLLDDLISYVYSGNNCKMILL
GDTAQLPPVNLDISPALDTHTLGVHYDKEIEHIELDEVMRQEESSGILFNATELRELLKESFIAEFRFNVKKFKDIVRLT
DGYDIQDAINTAYSNYSIEDTAFIVRSNKRANQYNEQIRTRILFKESELSVGDFLMVVKNNYFWLKETDEAGFIANGDII
EVLELFGIKELYGFTFAKVKIRMVDYPDQKPFETVLILDTIKSESPSLTYEESNRLYEEVMKDYEDESTKYKRFQKVKEN
EYFNGLQVKFSYAITCHKSQGGQWNTVFIEQPYLPNGIDHDYIRWLYTAMTRAKNKLYLIGFKDESFEE

Specific function: Unknown

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.1.11.5

Molecular weight: Translated: 53826; Mature: 53826

Theoretical pI: Translated: 5.41; Mature: 5.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSSAFYGVLQRRFPFAPTYKQDIFFQKIAIFLTEPANDTIFVLKGYAGTGKTTVISTIV
CCCCHHHHHHHHCCCCCCCHHHHHHHEEEEEEEECCCCCEEEEEECCCCCCCHHHHHHHH
NNLGDINKKFVLLAPTGRAAKVIANYSNTAAFTIHKKIYFPKKSSGGGVAFTRQVNKHKN
HHHCCCCCCEEEEECCCCCEEEEEECCCCEEEEEEEEEEECCCCCCCCEEEEEECCCCCC
TIFIVDEASMISDSTLDSGSLLDDLISYVYSGNNCKMILLGDTAQLPPVNLDISPALDTH
EEEEEECCHHCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCE
TLGVHYDKEIEHIELDEVMRQEESSGILFNATELRELLKESFIAEFRFNVKKFKDIVRLT
EEEEEECCCCCEECHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHCHHHHHHHHHHC
DGYDIQDAINTAYSNYSIEDTAFIVRSNKRANQYNEQIRTRILFKESELSVGDFLMVVKN
CCCCHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHEEEEEECCCCCCEEEEEEEC
NYFWLKETDEAGFIANGDIIEVLELFGIKELYGFTFAKVKIRMVDYPDQKPFETVLILDT
CEEEEEECCCCCEEECCCHHHHHHHHCHHHHHCCEEEEEEEEEEECCCCCCCEEEEEEEE
IKSESPSLTYEESNRLYEEVMKDYEDESTKYKRFQKVKENEYFNGLQVKFSYAITCHKSQ
CCCCCCCEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCC
GGQWNTVFIEQPYLPNGIDHDYIRWLYTAMTRAKNKLYLIGFKDESFEE
CCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCC
>Mature Secondary Structure
MNSSAFYGVLQRRFPFAPTYKQDIFFQKIAIFLTEPANDTIFVLKGYAGTGKTTVISTIV
CCCCHHHHHHHHCCCCCCCHHHHHHHEEEEEEEECCCCCEEEEEECCCCCCCHHHHHHHH
NNLGDINKKFVLLAPTGRAAKVIANYSNTAAFTIHKKIYFPKKSSGGGVAFTRQVNKHKN
HHHCCCCCCEEEEECCCCCEEEEEECCCCEEEEEEEEEEECCCCCCCCEEEEEECCCCCC
TIFIVDEASMISDSTLDSGSLLDDLISYVYSGNNCKMILLGDTAQLPPVNLDISPALDTH
EEEEEECCHHCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEECCCCCCCE
TLGVHYDKEIEHIELDEVMRQEESSGILFNATELRELLKESFIAEFRFNVKKFKDIVRLT
EEEEEECCCCCEECHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHCHHHHHHHHHHC
DGYDIQDAINTAYSNYSIEDTAFIVRSNKRANQYNEQIRTRILFKESELSVGDFLMVVKN
CCCCHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHEEEEEECCCCCCEEEEEEEC
NYFWLKETDEAGFIANGDIIEVLELFGIKELYGFTFAKVKIRMVDYPDQKPFETVLILDT
CEEEEEECCCCCEEECCCHHHHHHHHCHHHHHCCEEEEEEEEEEECCCCCCCEEEEEEEE
IKSESPSLTYEESNRLYEEVMKDYEDESTKYKRFQKVKENEYFNGLQVKFSYAITCHKSQ
CCCCCCCEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCC
GGQWNTVFIEQPYLPNGIDHDYIRWLYTAMTRAKNKLYLIGFKDESFEE
CCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA