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The map label for this gene is ykfA [H]

Identifier: 146302190

GI number: 146302190

Start: 5375768

End: 5376673

Strand: Direct

Name: ykfA [H]

Synonym: Fjoh_4459

Alternate gene names: 146302190

Gene position: 5375768-5376673 (Clockwise)

Preceding gene: 146302184

Following gene: 146302191

Centisome position: 88.17

GC content: 38.63

Gene sequence:

>906_bases
ATGATTACCCCACCATACCTGCAATCAGGAGATAAAGTCGGAATTTTAAGTCCGGCAAGAACTGTTAGCGCACCAGAAAT
AGAAGAAGGCCTTAAAATTTTAAAAAGCTGGAACTTGGAGCCTGTTATTGGCAAAAACGCGTATAATGTTTATGGCTATT
TTGCAGGGACCGATCAGGAAAGAGCTGAAGATCTGCAAAAAATGCTTGATGACGACACCATAAAAGCCATCATTTTTACC
AGAGGAGGTTATAGAACTATAAAAATTATTGACCAGCTCGATTTTACCAATTTTAAGAAAAACCCAAAATGGATCGTGGG
ATATAGCGACATTACGGTTCTACACAGCCACATTCATGCATTGGAAATTGAAACGATTCATGCTGTTATGCTTCAAGGTA
TGCCAAGAGCAACTCCGGAATCTGTGGCATCGATAAAATCTGCTTTGTTTGGAGAATCGCTGGCATATAAGATGGCTAAA
AGCAACAAAAATAAATTTAGCGGAAATACTGTAGAAGGAATTTTGGTAGGCGGAAATTTATCTCTTTTATTTGCTTTAAA
CGGGTCGGTTTCGGATATAAATACCGCTGGAAAAATATTGTTTTTTGAAGATCTTGACGAATATTTATATCATATAGACA
AAGCGCTGACTGCACTGAAAAGAAACAATAAATTAGCAGATCTAAAGGCCATTTTGGTAGGAGCCATGACCAATATTAAA
GAAGATGATCTGCCCTATGGCAAAACCTATTACGAAATAGTGCTCGAGGCGGTACGGGAATTTGATTATCCTGTCTATTT
TGATTTTCCCTGCGGGCATCAGCCAGACAATCAGGCTCTGATTTTGGGCAGAACTGTTGCAATTACCCCAGATCGTGATT
CTGTTACGGTTGCGTTTAAAAATTAA

Upstream 100 bases:

>100_bases
ATAAAAAGTCAAATTATGCAGTACGAACATTCCCTTACTGACCAATTTCCCCATTCTGCTACTAAAAAAATATTAATTTA
GCGGCAGCAAAAAAACAAAA

Downstream 100 bases:

>100_bases
GAAATAACATACCTGTAATTTGTAATGACGCAGATGGTCTACTAAATATCAAACTATCCAACGGTGATATCTGATAATAG
ACAAAAAAAGACTGGAACTA

Product: peptidase U61, LD-carboxypeptidase A

Products: NA

Alternate protein names: LD-carboxypeptidase [H]

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MITPPYLQSGDKVGILSPARTVSAPEIEEGLKILKSWNLEPVIGKNAYNVYGYFAGTDQERAEDLQKMLDDDTIKAIIFT
RGGYRTIKIIDQLDFTNFKKNPKWIVGYSDITVLHSHIHALEIETIHAVMLQGMPRATPESVASIKSALFGESLAYKMAK
SNKNKFSGNTVEGILVGGNLSLLFALNGSVSDINTAGKILFFEDLDEYLYHIDKALTALKRNNKLADLKAILVGAMTNIK
EDDLPYGKTYYEIVLEAVREFDYPVYFDFPCGHQPDNQALILGRTVAITPDRDSVTVAFKN

Sequences:

>Translated_301_residues
MITPPYLQSGDKVGILSPARTVSAPEIEEGLKILKSWNLEPVIGKNAYNVYGYFAGTDQERAEDLQKMLDDDTIKAIIFT
RGGYRTIKIIDQLDFTNFKKNPKWIVGYSDITVLHSHIHALEIETIHAVMLQGMPRATPESVASIKSALFGESLAYKMAK
SNKNKFSGNTVEGILVGGNLSLLFALNGSVSDINTAGKILFFEDLDEYLYHIDKALTALKRNNKLADLKAILVGAMTNIK
EDDLPYGKTYYEIVLEAVREFDYPVYFDFPCGHQPDNQALILGRTVAITPDRDSVTVAFKN
>Mature_301_residues
MITPPYLQSGDKVGILSPARTVSAPEIEEGLKILKSWNLEPVIGKNAYNVYGYFAGTDQERAEDLQKMLDDDTIKAIIFT
RGGYRTIKIIDQLDFTNFKKNPKWIVGYSDITVLHSHIHALEIETIHAVMLQGMPRATPESVASIKSALFGESLAYKMAK
SNKNKFSGNTVEGILVGGNLSLLFALNGSVSDINTAGKILFFEDLDEYLYHIDKALTALKRNNKLADLKAILVGAMTNIK
EDDLPYGKTYYEIVLEAVREFDYPVYFDFPCGHQPDNQALILGRTVAITPDRDSVTVAFKN

Specific function: May be involved in the degradation of peptidoglycan by catalyzing the cleavage of the terminal D-alanine residue from cytoplasmic murein peptides [H]

COG id: COG1619

COG function: function code V; Uncharacterized proteins, homologs of microcin C7 resistance protein MccF

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S66 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003507 [H]

Pfam domain/function: PF02016 Peptidase_S66 [H]

EC number: NA

Molecular weight: Translated: 33491; Mature: 33491

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITPPYLQSGDKVGILSPARTVSAPEIEEGLKILKSWNLEPVIGKNAYNVYGYFAGTDQE
CCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEECCCCEEEEEEEECCCHH
RAEDLQKMLDDDTIKAIIFTRGGYRTIKIIDQLDFTNFKKNPKWIVGYSDITVLHSHIHA
HHHHHHHHHCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCEEEECCHHHHHHHHHHH
LEIETIHAVMLQGMPRATPESVASIKSALFGESLAYKMAKSNKNKFSGNTVEGILVGGNL
EEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCE
SLLFALNGSVSDINTAGKILFFEDLDEYLYHIDKALTALKRNNKLADLKAILVGAMTNIK
EEEEEECCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
EDDLPYGKTYYEIVLEAVREFDYPVYFDFPCGHQPDNQALILGRTVAITPDRDSVTVAFK
CCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEEEEEEECCCCCCEEEEEC
N
C
>Mature Secondary Structure
MITPPYLQSGDKVGILSPARTVSAPEIEEGLKILKSWNLEPVIGKNAYNVYGYFAGTDQE
CCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEECCCCEEEEEEEECCCHH
RAEDLQKMLDDDTIKAIIFTRGGYRTIKIIDQLDFTNFKKNPKWIVGYSDITVLHSHIHA
HHHHHHHHHCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCEEEECCHHHHHHHHHHH
LEIETIHAVMLQGMPRATPESVASIKSALFGESLAYKMAKSNKNKFSGNTVEGILVGGNL
EEHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCE
SLLFALNGSVSDINTAGKILFFEDLDEYLYHIDKALTALKRNNKLADLKAILVGAMTNIK
EEEEEECCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
EDDLPYGKTYYEIVLEAVREFDYPVYFDFPCGHQPDNQALILGRTVAITPDRDSVTVAFK
CCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEEEEEEECCCCCCEEEEEC
N
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]