| Definition | Flavobacterium johnsoniae UW101 chromosome, complete genome. |
|---|---|
| Accession | NC_009441 |
| Length | 6,096,872 |
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The map label for this gene is 146302039
Identifier: 146302039
GI number: 146302039
Start: 5201905
End: 5202510
Strand: Direct
Name: 146302039
Synonym: Fjoh_4303
Alternate gene names: NA
Gene position: 5201905-5202510 (Clockwise)
Preceding gene: 146302038
Following gene: 146302040
Centisome position: 85.32
GC content: 31.52
Gene sequence:
>606_bases ATGACTTTCAACAAAGAAACATACCTCAACAATCTAAAATTATATTTCGAAAGTTACGCTCCTATCTCTGAAAAGTCTTG GAATTTGATTGAAAGCTTGACACATTTCCAGACAATCAAAAAAGGAGAAATACTACTAGAAAATGGAGAAATCTGCAAAA ATCTTTATTTTATTGCCAAAGGAATTTTACGAACTTTTATTACTGACGAACAAGGAAATTTCTATAACAAAAATCTTTTT CTCGAAAACAAACTTGCATGCTCTAAAGTTTCATCAATATTGCAAACTCCTTCTAACTTTACAATTGAAGCTTTAGAAGA TTGCATTTTAATCAATCTTAATTATCAAAAATATATTCAGTTGATTAGCGAAAATGACGATCTCAAAACATTTTATATAG CATACTTAGAACAAAATTGGATTATCGAAAAAGAACAAAGAGAAGTGGCGTTAGTTATGCAGAACGCAACAGAAAGATAT GTTAATCTTCTGGAGAAACATCCCACTATTGCTGATCGCGTTCCGTTACTGCATATTGCTTCGCACTTGGGTATTACTCC CACGCAGTTAAGCCGAATTAGAAAAAGTTTGGAAAAAGATTTGTAA
Upstream 100 bases:
>100_bases AAATTGCGCTTATTTCTTTATTTTTGAATAGTAAATCTAGTGCATTAAAATAAAAAAAACTTTGTGCCTTAGCGCCTTTG TGCCAAAACCAAACCAATCT
Downstream 100 bases:
>100_bases ATCAACATATGTAAAGGCTTTTCTGAAAAACTCAATTTACCTTTGTCAGTATAATTCAAACTCGTCATTTACAATGAACT CTATAAACCTCATCAAAGAC
Product: cyclic nucleotide-binding protein
Products: NA
Alternate protein names: Catabolite Gene Activator Protein; Crp/Fnr Family Transcriptional Regulator; Regulatory Protein
Number of amino acids: Translated: 201; Mature: 200
Protein sequence:
>201_residues MTFNKETYLNNLKLYFESYAPISEKSWNLIESLTHFQTIKKGEILLENGEICKNLYFIAKGILRTFITDEQGNFYNKNLF LENKLACSKVSSILQTPSNFTIEALEDCILINLNYQKYIQLISENDDLKTFYIAYLEQNWIIEKEQREVALVMQNATERY VNLLEKHPTIADRVPLLHIASHLGITPTQLSRIRKSLEKDL
Sequences:
>Translated_201_residues MTFNKETYLNNLKLYFESYAPISEKSWNLIESLTHFQTIKKGEILLENGEICKNLYFIAKGILRTFITDEQGNFYNKNLF LENKLACSKVSSILQTPSNFTIEALEDCILINLNYQKYIQLISENDDLKTFYIAYLEQNWIIEKEQREVALVMQNATERY VNLLEKHPTIADRVPLLHIASHLGITPTQLSRIRKSLEKDL >Mature_200_residues TFNKETYLNNLKLYFESYAPISEKSWNLIESLTHFQTIKKGEILLENGEICKNLYFIAKGILRTFITDEQGNFYNKNLFL ENKLACSKVSSILQTPSNFTIEALEDCILINLNYQKYIQLISENDDLKTFYIAYLEQNWIIEKEQREVALVMQNATERYV NLLEKHPTIADRVPLLHIASHLGITPTQLSRIRKSLEKDL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23502; Mature: 23371
Theoretical pI: Translated: 6.13; Mature: 6.13
Prosite motif: PS50042 CNMP_BINDING_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTFNKETYLNNLKLYFESYAPISEKSWNLIESLTHFQTIKKGEILLENGEICKNLYFIAK CCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHH GILRTFITDEQGNFYNKNLFLENKLACSKVSSILQTPSNFTIEALEDCILINLNYQKYIQ HHHHHHHCCCCCCEECCCEEECCHHHHHHHHHHHHCCCCCCHHHHCCEEEEEECHHHHHH LISENDDLKTFYIAYLEQNWIIEKEQREVALVMQNATERYVNLLEKHPTIADRVPLLHIA HHCCCCCCCEEEEEEHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH SHLGITPTQLSRIRKSLEKDL HHCCCCHHHHHHHHHHHHHCC >Mature Secondary Structure TFNKETYLNNLKLYFESYAPISEKSWNLIESLTHFQTIKKGEILLENGEICKNLYFIAK CCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHH GILRTFITDEQGNFYNKNLFLENKLACSKVSSILQTPSNFTIEALEDCILINLNYQKYIQ HHHHHHHCCCCCCEECCCEEECCHHHHHHHHHHHHCCCCCCHHHHCCEEEEEECHHHHHH LISENDDLKTFYIAYLEQNWIIEKEQREVALVMQNATERYVNLLEKHPTIADRVPLLHIA HHCCCCCCCEEEEEEHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH SHLGITPTQLSRIRKSLEKDL HHCCCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA