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The map label for this gene is ypdB [H]

Identifier: 146302018

GI number: 146302018

Start: 5172276

End: 5172974

Strand: Reverse

Name: ypdB [H]

Synonym: Fjoh_4282

Alternate gene names: 146302018

Gene position: 5172974-5172276 (Counterclockwise)

Preceding gene: 146302019

Following gene: 146302017

Centisome position: 84.85

GC content: 31.76

Gene sequence:

>699_bases
ATGAGAGATCCTAAAAAATGCATAATTGTAGATGATGAGCCTGCTGCGCATTATGTTTTAGCTAATTATATAAAACAAAA
TCCAAAGTTAGAGTTGGTTTTTCAGGGCTATAACGGCATTGAAGCAATGGATTATCTTAGAGAAAATAAAGTCGATTTGA
TGTTTCTGGATATTAATATGCCTGAGATTTCTGGAATGGAATTGTTAAAAATTATTCCCAATCATCCTAAAACAATCCTA
ACAACGGCTTATTCTGAATTTGCCCTTGAAAGTTATGATTACGGTGTAATTGATTATTTATTAAAACCAATTTATTTTCC
GAGGTTTCTAAAAGCTATTGATCGTTTCTTTTCGACGGAAACTACAAAAGCGAAAGAAGAAGAAATTGCCATAAATACGG
TTAATGTAAAAGTTGACGGTTATTTTATCGAAATAGAATTAGACCAGCTTTTGTTTGCACAGAGTTTTGGAAATTATGTG
AAACTGCATACTACAAAACGCACTTATCTGGCATCTATAACCACAACTGAGTTAGAAAAATGCCTTCCGGAGAAGAATTT
TATGCGTATTCATAAATCTTATATAGTGGCTCTGGATAAAATTGAAGCGACTGAAAAAGATTTTGTTGTTATTAAAAATG
AAAAACTGCCTATTGGAATAACCTATAAAAGGGAATTAACCGACAGGTTAAAAAAGTAA

Upstream 100 bases:

>100_bases
AGATTGAATTTAATTTTTGGAAAGAATTATAATCTGGATATTCAGGATAATAAAAATACTTATATTGTTGATTTGAAACT
GCAATTGAAAAGATTTGCTA

Downstream 100 bases:

>100_bases
TATTATTTTTAATAAAAAATATTTGAAATTTATTTTAAAAGTAATACTTTTAGTATAAGGTTTTCGATTTTTCAATTTAA
ATATTCAGGTCATGAAAAAC

Product: LytTR family two component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MRDPKKCIIVDDEPAAHYVLANYIKQNPKLELVFQGYNGIEAMDYLRENKVDLMFLDINMPEISGMELLKIIPNHPKTIL
TTAYSEFALESYDYGVIDYLLKPIYFPRFLKAIDRFFSTETTKAKEEEIAINTVNVKVDGYFIEIELDQLLFAQSFGNYV
KLHTTKRTYLASITTTELEKCLPEKNFMRIHKSYIVALDKIEATEKDFVVIKNEKLPIGITYKRELTDRLKK

Sequences:

>Translated_232_residues
MRDPKKCIIVDDEPAAHYVLANYIKQNPKLELVFQGYNGIEAMDYLRENKVDLMFLDINMPEISGMELLKIIPNHPKTIL
TTAYSEFALESYDYGVIDYLLKPIYFPRFLKAIDRFFSTETTKAKEEEIAINTVNVKVDGYFIEIELDQLLFAQSFGNYV
KLHTTKRTYLASITTTELEKCLPEKNFMRIHKSYIVALDKIEATEKDFVVIKNEKLPIGITYKRELTDRLKK
>Mature_232_residues
MRDPKKCIIVDDEPAAHYVLANYIKQNPKLELVFQGYNGIEAMDYLRENKVDLMFLDINMPEISGMELLKIIPNHPKTIL
TTAYSEFALESYDYGVIDYLLKPIYFPRFLKAIDRFFSTETTKAKEEEIAINTVNVKVDGYFIEIELDQLLFAQSFGNYV
KLHTTKRTYLASITTTELEKCLPEKNFMRIHKSYIVALDKIEATEKDFVVIKNEKLPIGITYKRELTDRLKK

Specific function: Unknown

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788724, Length=212, Percent_Identity=30.188679245283, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI87082052, Length=205, Percent_Identity=28.780487804878, Blast_Score=90, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 27057; Mature: 27057

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDPKKCIIVDDEPAAHYVLANYIKQNPKLELVFQGYNGIEAMDYLRENKVDLMFLDINM
CCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCEEEEEECCC
PEISGMELLKIIPNHPKTILTTAYSEFALESYDYGVIDYLLKPIYFPRFLKAIDRFFSTE
CCCCCCHHEEECCCCCCEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
TTKAKEEEIAINTVNVKVDGYFIEIELDQLLFAQSFGNYVKLHTTKRTYLASITTTELEK
CCCCCCCEEEEEEEEEEECCEEEEEEHHHHHHHHHCCCEEEEEECCCEEEEEEHHHHHHH
CLPEKNFMRIHKSYIVALDKIEATEKDFVVIKNEKLPIGITYKRELTDRLKK
HCCCHHHHHHHHHHHEEEECCCCCCCCEEEEECCCCEEEEEEHHHHHHHHCC
>Mature Secondary Structure
MRDPKKCIIVDDEPAAHYVLANYIKQNPKLELVFQGYNGIEAMDYLRENKVDLMFLDINM
CCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCEEEEEECCC
PEISGMELLKIIPNHPKTILTTAYSEFALESYDYGVIDYLLKPIYFPRFLKAIDRFFSTE
CCCCCCHHEEECCCCCCEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
TTKAKEEEIAINTVNVKVDGYFIEIELDQLLFAQSFGNYVKLHTTKRTYLASITTTELEK
CCCCCCCEEEEEEEEEEECCEEEEEEHHHHHHHHHCCCEEEEEECCCEEEEEEHHHHHHH
CLPEKNFMRIHKSYIVALDKIEATEKDFVVIKNEKLPIGITYKRELTDRLKK
HCCCHHHHHHHHHHHEEEECCCCCCCCEEEEECCCCEEEEEEHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]