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The map label for this gene is ypdA [H]

Identifier: 146302019

GI number: 146302019

Start: 5172961

End: 5174010

Strand: Reverse

Name: ypdA [H]

Synonym: Fjoh_4283

Alternate gene names: 146302019

Gene position: 5174010-5172961 (Counterclockwise)

Preceding gene: 146302025

Following gene: 146302018

Centisome position: 84.86

GC content: 33.05

Gene sequence:

>1050_bases
ATGAGCAGAAAATTTGATAACATACTGGATAATAAGTGGTGGCAGGAGATTGCCGTCGTCGCGTTTTCCTTTACCATATA
CACATTAAAAAACGACTGGATGTTATTTAGTTCTTTAACTTCCGTTTTAATGGGCATTTTTTTCTACTTCATTCTTTACA
TGCACGCCCAGTTTAATCGTTTTTTTCTTCTTCCCATTTTATTTAAAACCCGCCGTCCGGCAACTTATATTTTCTTAACC
ATTTTTGGAGTTCTTGTTTTCTCGATTGTTTTGTATGAGATCACCATGCTCGATATGTTCAGCAATTGTCATTTGTATCA
AAATTCGCATCAGCGAAGTTATATGTATCAATTGGCGAGCGTTTTAGGAACTTTGGTTTGTATTTTAAGCCCTATTATTG
TTTTTAAATTCTACAGAATTCACAGAAAACGTACTGAAGAAGCTTTGCTTTTCAACCAAATGCAGCTGAATTCTTTGAAA
GGACAGTTGAATCCGCATTTTTTATTTAATACCTTTAATACGCTTTACGGAATTAGTTTAGAATTTCCGGACAGAACACC
GGATTTAATCATGAAGGTTTCGCAGCTAATGCGTTATCAGCTGGAAAGCAACAGCAAACAATGCGTATCTTTAGAAGATG
AATTAGAATTCATTAACAGTTACGTTCAGCTTGAAAAAGAGCGTGTCGGCTATCGATGCGATATAACTTTTGATTATAAA
GTAGACAATCAAAATGCTTATAAAATTTCGCCGATGCTTTTAATTGCTTTTATTGAAAATGCTTTTAAACACGGAACCTG
CGCTATAGAAAAGTGTTTTGTTCAAATTTTTATTACGGTTCAGGAAGGACAGCTTCATCTTCATGTTGTAAATTCAATTC
CAAAGAAAACCGATGCTGTGGTTTCAACTAAAATTGGTTTAAAAAATACAATCGAAAGATTGAATTTAATTTTTGGAAAG
AATTATAATCTGGATATTCAGGATAATAAAAATACTTATATTGTTGATTTGAAACTGCAATTGAAAAGATTTGCTAATGA
GAGATCCTAA

Upstream 100 bases:

>100_bases
GTGATGTGCTGCACTAATAAATGACCAATTCAATTGGTCATTTATTGGAAAAAATAATTAAATATTTGTCCGTACTTTGT
ACTCTATTTAAGTTTTAAAA

Downstream 100 bases:

>100_bases
AAAATGCATAATTGTAGATGATGAGCCTGCTGCGCATTATGTTTTAGCTAATTATATAAAACAAAATCCAAAGTTAGAGT
TGGTTTTTCAGGGCTATAAC

Product: signal transduction histidine kinase LytS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 349; Mature: 348

Protein sequence:

>349_residues
MSRKFDNILDNKWWQEIAVVAFSFTIYTLKNDWMLFSSLTSVLMGIFFYFILYMHAQFNRFFLLPILFKTRRPATYIFLT
IFGVLVFSIVLYEITMLDMFSNCHLYQNSHQRSYMYQLASVLGTLVCILSPIIVFKFYRIHRKRTEEALLFNQMQLNSLK
GQLNPHFLFNTFNTLYGISLEFPDRTPDLIMKVSQLMRYQLESNSKQCVSLEDELEFINSYVQLEKERVGYRCDITFDYK
VDNQNAYKISPMLLIAFIENAFKHGTCAIEKCFVQIFITVQEGQLHLHVVNSIPKKTDAVVSTKIGLKNTIERLNLIFGK
NYNLDIQDNKNTYIVDLKLQLKRFANERS

Sequences:

>Translated_349_residues
MSRKFDNILDNKWWQEIAVVAFSFTIYTLKNDWMLFSSLTSVLMGIFFYFILYMHAQFNRFFLLPILFKTRRPATYIFLT
IFGVLVFSIVLYEITMLDMFSNCHLYQNSHQRSYMYQLASVLGTLVCILSPIIVFKFYRIHRKRTEEALLFNQMQLNSLK
GQLNPHFLFNTFNTLYGISLEFPDRTPDLIMKVSQLMRYQLESNSKQCVSLEDELEFINSYVQLEKERVGYRCDITFDYK
VDNQNAYKISPMLLIAFIENAFKHGTCAIEKCFVQIFITVQEGQLHLHVVNSIPKKTDAVVSTKIGLKNTIERLNLIFGK
NYNLDIQDNKNTYIVDLKLQLKRFANERS
>Mature_348_residues
SRKFDNILDNKWWQEIAVVAFSFTIYTLKNDWMLFSSLTSVLMGIFFYFILYMHAQFNRFFLLPILFKTRRPATYIFLTI
FGVLVFSIVLYEITMLDMFSNCHLYQNSHQRSYMYQLASVLGTLVCILSPIIVFKFYRIHRKRTEEALLFNQMQLNSLKG
QLNPHFLFNTFNTLYGISLEFPDRTPDLIMKVSQLMRYQLESNSKQCVSLEDELEFINSYVQLEKERVGYRCDITFDYKV
DNQNAYKISPMLLIAFIENAFKHGTCAIEKCFVQIFITVQEGQLHLHVVNSIPKKTDAVVSTKIGLKNTIERLNLIFGKN
YNLDIQDNKNTYIVDLKLQLKRFANERS

Specific function: Unknown

COG id: COG3275

COG function: function code T; Putative regulator of cell autolysis

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788723, Length=226, Percent_Identity=26.1061946902655, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788446, Length=189, Percent_Identity=27.5132275132275, Blast_Score=76, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR010559
- InterPro:   IPR011620 [H]

Pfam domain/function: PF07694 5TM-5TMR_LYT; PF02518 HATPase_c; PF06580 His_kinase [H]

EC number: NA

Molecular weight: Translated: 41190; Mature: 41059

Theoretical pI: Translated: 9.02; Mature: 9.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRKFDNILDNKWWQEIAVVAFSFTIYTLKNDWMLFSSLTSVLMGIFFYFILYMHAQFNR
CCCCHHHHHHHHHHHHHHHHHHEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
FFLLPILFKTRRPATYIFLTIFGVLVFSIVLYEITMLDMFSNCHLYQNSHQRSYMYQLAS
EEEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHH
VLGTLVCILSPIIVFKFYRIHRKRTEEALLFNQMQLNSLKGQLNPHFLFNTFNTLYGISL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHEEEEE
EFPDRTPDLIMKVSQLMRYQLESNSKQCVSLEDELEFINSYVQLEKERVGYRCDITFDYK
ECCCCCHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHCCEEEEEEEEEE
VDNQNAYKISPMLLIAFIENAFKHGTCAIEKCFVQIFITVQEGQLHLHVVNSIPKKTDAV
ECCCCCEEEHHHHHHHHHHHHHCCCHHHHHHHHHEEEEEEECCEEEEEEECCCCCCHHHH
VSTKIGLKNTIERLNLIFGKNYNLDIQDNKNTYIVDLKLQLKRFANERS
HEECCCHHHHHHHHHHHCCCCCEEEEECCCCEEEEEEEHHHHHHCCCCC
>Mature Secondary Structure 
SRKFDNILDNKWWQEIAVVAFSFTIYTLKNDWMLFSSLTSVLMGIFFYFILYMHAQFNR
CCCHHHHHHHHHHHHHHHHHHEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
FFLLPILFKTRRPATYIFLTIFGVLVFSIVLYEITMLDMFSNCHLYQNSHQRSYMYQLAS
EEEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHH
VLGTLVCILSPIIVFKFYRIHRKRTEEALLFNQMQLNSLKGQLNPHFLFNTFNTLYGISL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHEEEEE
EFPDRTPDLIMKVSQLMRYQLESNSKQCVSLEDELEFINSYVQLEKERVGYRCDITFDYK
ECCCCCHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHCCEEEEEEEEEE
VDNQNAYKISPMLLIAFIENAFKHGTCAIEKCFVQIFITVQEGQLHLHVVNSIPKKTDAV
ECCCCCEEEHHHHHHHHHHHHHCCCHHHHHHHHHEEEEEEECCEEEEEEECCCCCCHHHH
VSTKIGLKNTIERLNLIFGKNYNLDIQDNKNTYIVDLKLQLKRFANERS
HEECCCHHHHHHHHHHHCCCCCEEEEECCCCEEEEEEEHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]