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The map label for this gene is peh [H]

Identifier: 146301964

GI number: 146301964

Start: 5090602

End: 5091930

Strand: Reverse

Name: peh [H]

Synonym: Fjoh_4228

Alternate gene names: 146301964

Gene position: 5091930-5090602 (Counterclockwise)

Preceding gene: 146301965

Following gene: 146301963

Centisome position: 83.52

GC content: 35.21

Gene sequence:

>1329_bases
ATGAAAACCATCTTAAAAATCATATTCTGTGTTATTGCCTTTGCTCAAACGGCAATTTCGCAGAATTACACTAATGACAC
ATTTCCTGACGGAAGCCCAATCTCCAATTGGTTTAAAGACTATTCTAAAATTCAGCTGAAAGATTTAGGAAAAAAATACA
CCATAACAGATTTTGGAGTAAGTAAAGACAGTACTAAAATCCAGACCACTGCCATACAAAAAGTAATCGATAAAGCTTCT
GCAAATGGAGGAGGAGTAATCGTAATTCCTAAAGGTGTTTTTTTAAGCGGTGCCTTATTTTTTAAACCCAAAACAGCTTT
GTATGTATCAGAAGGAGGCGTTTTAAAAGGATCAGATAATATTGCCGATTTCCCTATTATGCCATCAAGAATGGAAGGGC
AGAACCTGGATTATTTTCCTGCGCTTGTAAATGCCTATAACGTTGATAATTTCTCAATTTCAGGAAAAGGAACAATAAAC
GGAAACGGAAAAAAATATTGGGAAGCCTTTTGGGAACGACGCAAAGAAAACCCAAAATGCACCAATCTAGAAGTTTCAAG
ACCAAGATTAGTTTTTGTGTGGAATTCCAACAACGTACAGTTTCAGGATGTAAAACTGATCAATTCCGGTTTCTGGACCA
ATCACTTTTACAAATGCAATAATGTGAAACTGCTTGATTTGTATATTTTTTCGCCGCACATCGAAATTAAAGCACCAAGT
ACAGATGCTATAGATATTGATATTTGCAATAACTTTTTGGTAAAAGGCTGTTATATGTCCGTTAACGACGATGCTATTGC
CTTAAAAGGAGGAAAAGGCCCTTATGCCGATCAGGATAAAAACAACGGTCCTAACTCGAATATTATTATAGAAGACTGCA
ATTTCGGATTCTGTCATTCAGCCTTAACAAACGGAAGTGAATCGATTCATAACCGAAATGTAATTATGAGAAACTGCAAG
ATAGACGGAGCTTCGAGAATGTTATGGCTTAAAATGCGTCCTGATACACCGCAGCGATACGAATACATACGAGTAGAAGA
TATAAAAGGGCAGGCCAAAACAGGTTTGGCGATTTTTGCATGGAAACAGTTTTTTGATTTAAAAGGCCGTCCTGATATTC
CGTTATCTTACGGAGATAATGTAACGTTGAAAAATATCAACTTAAAATGTGAAACATTTTACGGAGTAGAGAACGATCCA
AATGTTCGTTTAACCAATTTTACATTTGAAAATTTAAATATCGAAACTGTAAAAACGAATATTGATAAAAGCGTAATAAA
AGGAGTTGAATTTAAGAATGTCTATGTAAATAAGCAGTTAATCGAGTAA

Upstream 100 bases:

>100_bases
AAAAGTTGAGGTAAAATAATGAGATAACACCAATGTAAAACCTTGTCAAAGTTTCAAACTTAGGCAAGGTTTAATAACCA
CAAAACTAACAACTAACCCA

Downstream 100 bases:

>100_bases
TTTTTCCGCACATTCTCAATTCGGTATACAGGATTTTAAGCCAAAATCTTATGTTTTTTAACACTTTTAAAAGTTTAGTA
AAAAATATTTTATGCCTCAA

Product: glycoside hydrolase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 442; Mature: 442

Protein sequence:

>442_residues
MKTILKIIFCVIAFAQTAISQNYTNDTFPDGSPISNWFKDYSKIQLKDLGKKYTITDFGVSKDSTKIQTTAIQKVIDKAS
ANGGGVIVIPKGVFLSGALFFKPKTALYVSEGGVLKGSDNIADFPIMPSRMEGQNLDYFPALVNAYNVDNFSISGKGTIN
GNGKKYWEAFWERRKENPKCTNLEVSRPRLVFVWNSNNVQFQDVKLINSGFWTNHFYKCNNVKLLDLYIFSPHIEIKAPS
TDAIDIDICNNFLVKGCYMSVNDDAIALKGGKGPYADQDKNNGPNSNIIIEDCNFGFCHSALTNGSESIHNRNVIMRNCK
IDGASRMLWLKMRPDTPQRYEYIRVEDIKGQAKTGLAIFAWKQFFDLKGRPDIPLSYGDNVTLKNINLKCETFYGVENDP
NVRLTNFTFENLNIETVKTNIDKSVIKGVEFKNVYVNKQLIE

Sequences:

>Translated_442_residues
MKTILKIIFCVIAFAQTAISQNYTNDTFPDGSPISNWFKDYSKIQLKDLGKKYTITDFGVSKDSTKIQTTAIQKVIDKAS
ANGGGVIVIPKGVFLSGALFFKPKTALYVSEGGVLKGSDNIADFPIMPSRMEGQNLDYFPALVNAYNVDNFSISGKGTIN
GNGKKYWEAFWERRKENPKCTNLEVSRPRLVFVWNSNNVQFQDVKLINSGFWTNHFYKCNNVKLLDLYIFSPHIEIKAPS
TDAIDIDICNNFLVKGCYMSVNDDAIALKGGKGPYADQDKNNGPNSNIIIEDCNFGFCHSALTNGSESIHNRNVIMRNCK
IDGASRMLWLKMRPDTPQRYEYIRVEDIKGQAKTGLAIFAWKQFFDLKGRPDIPLSYGDNVTLKNINLKCETFYGVENDP
NVRLTNFTFENLNIETVKTNIDKSVIKGVEFKNVYVNKQLIE
>Mature_442_residues
MKTILKIIFCVIAFAQTAISQNYTNDTFPDGSPISNWFKDYSKIQLKDLGKKYTITDFGVSKDSTKIQTTAIQKVIDKAS
ANGGGVIVIPKGVFLSGALFFKPKTALYVSEGGVLKGSDNIADFPIMPSRMEGQNLDYFPALVNAYNVDNFSISGKGTIN
GNGKKYWEAFWERRKENPKCTNLEVSRPRLVFVWNSNNVQFQDVKLINSGFWTNHFYKCNNVKLLDLYIFSPHIEIKAPS
TDAIDIDICNNFLVKGCYMSVNDDAIALKGGKGPYADQDKNNGPNSNIIIEDCNFGFCHSALTNGSESIHNRNVIMRNCK
IDGASRMLWLKMRPDTPQRYEYIRVEDIKGQAKTGLAIFAWKQFFDLKGRPDIPLSYGDNVTLKNINLKCETFYGVENDP
NVRLTNFTFENLNIETVKTNIDKSVIKGVEFKNVYVNKQLIE

Specific function: Involved in maceration and soft-rotting of plant tissue [H]

COG id: COG5434

COG function: function code M; Endopolygalacturonase

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 28 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000743
- InterPro:   IPR006626
- InterPro:   IPR012334
- InterPro:   IPR011050 [H]

Pfam domain/function: PF00295 Glyco_hydro_28 [H]

EC number: =3.2.1.15 [H]

Molecular weight: Translated: 49832; Mature: 49832

Theoretical pI: Translated: 8.83; Mature: 8.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTILKIIFCVIAFAQTAISQNYTNDTFPDGSPISNWFKDYSKIQLKDLGKKYTITDFGV
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHEEEHHHCCCEEEEEECCC
SKDSTKIQTTAIQKVIDKASANGGGVIVIPKGVFLSGALFFKPKTALYVSEGGVLKGSDN
CCCCCEEHHHHHHHHHHHCCCCCCCEEEEECCCEEECEEEECCCEEEEEECCCEEECCCC
IADFPIMPSRMEGQNLDYFPALVNAYNVDNFSISGKGTINGNGKKYWEAFWERRKENPKC
CCCCCCCCCCCCCCCCCHHHHHHEEECCCCEEECCCEEECCCCHHHHHHHHHHHCCCCCC
TNLEVSRPRLVFVWNSNNVQFQDVKLINSGFWTNHFYKCNNVKLLDLYIFSPHIEIKAPS
CCEEECCCEEEEEECCCCEEEEEEEEEECCCCCCCEEEECCEEEEEEEEECCEEEEECCC
TDAIDIDICNNFLVKGCYMSVNDDAIALKGGKGPYADQDKNNGPNSNIIIEDCNFGFCHS
CCEEEEEECCCEEEEEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHH
ALTNGSESIHNRNVIMRNCKIDGASRMLWLKMRPDTPQRYEYIRVEDIKGQAKTGLAIFA
HHCCCCHHHCCCCEEEEEEEECCCCEEEEEEECCCCCCCEEEEEEEECCCCCCCCEEEEE
WKQFFDLKGRPDIPLSYGDNVTLKNINLKCETFYGVENDPNVRLTNFTFENLNIETVKTN
EHHHHCCCCCCCCCEECCCCEEEEEEEEEEEEEECCCCCCCEEEEEEEECCCEEEEEECC
IDKSVIKGVEFKNVYVNKQLIE
CCHHHHCCCEEEEEEEEHEECC
>Mature Secondary Structure
MKTILKIIFCVIAFAQTAISQNYTNDTFPDGSPISNWFKDYSKIQLKDLGKKYTITDFGV
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHEEEHHHCCCEEEEEECCC
SKDSTKIQTTAIQKVIDKASANGGGVIVIPKGVFLSGALFFKPKTALYVSEGGVLKGSDN
CCCCCEEHHHHHHHHHHHCCCCCCCEEEEECCCEEECEEEECCCEEEEEECCCEEECCCC
IADFPIMPSRMEGQNLDYFPALVNAYNVDNFSISGKGTINGNGKKYWEAFWERRKENPKC
CCCCCCCCCCCCCCCCCHHHHHHEEECCCCEEECCCEEECCCCHHHHHHHHHHHCCCCCC
TNLEVSRPRLVFVWNSNNVQFQDVKLINSGFWTNHFYKCNNVKLLDLYIFSPHIEIKAPS
CCEEECCCEEEEEECCCCEEEEEEEEEECCCCCCCEEEECCEEEEEEEEECCEEEEECCC
TDAIDIDICNNFLVKGCYMSVNDDAIALKGGKGPYADQDKNNGPNSNIIIEDCNFGFCHS
CCEEEEEECCCEEEEEEEEEECCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHH
ALTNGSESIHNRNVIMRNCKIDGASRMLWLKMRPDTPQRYEYIRVEDIKGQAKTGLAIFA
HHCCCCHHHCCCCEEEEEEEECCCCEEEEEEECCCCCCCEEEEEEEECCCCCCCCEEEEE
WKQFFDLKGRPDIPLSYGDNVTLKNINLKCETFYGVENDPNVRLTNFTFENLNIETVKTN
EHHHHCCCCCCCCCEECCCCEEEEEEEEEEEEEECCCCCCCEEEEEEEECCCEEEEEECC
IDKSVIKGVEFKNVYVNKQLIE
CCHHHHCCCEEEEEEEEHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2215211; 8074530; 8407675 [H]